Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003878.1

Orthogroup ID

OG0013547

Physical Location & Seq

Genomic Coordinates Reverse (-)

230817 .. 231989

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003878.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgccggcgacgttacgtcgcgttctcaccgctactctcagacgccccaatatcctctttcctcaacgcccacctctctcctcccgccacgtaatccctgacccttcatttccggtcaccctcccgtcactctatcaccgcctcctatcctcctccgccgccgccgccgaaaaccctccggactcattccgaacccgaaccccactggagaagcaattcgaaacatgggtccagaaactcaaacccggattcggcccacccgacgtcgacgaggccctgaaagcccaatcggatcccgacctcgctctcgacattttccgatggacggcccagcagcgcaactacaagcacaaccactccacctacctgaccatgatcaaaatcctaatcaacggccgccgctaccgccacgccgaaaccctacttgaggaggtggtcgccggagcttgtgagataagtgtcccgctctataactccattattcgattctgttgtggaagaaagatgctcttcaatcgcgcttttgatgtgtacaagaaaatgttgaattcggagaactgtaagcccacattggagacctatgcattgctgcttaattcattgctcaggaggtttaataatatcactgtttgccatgtgtatttgcggtcggtgaggtcgttgtcgaagcaaatgaaggcatccggtgtgataccagatacttttgtgttgaatatgatcatcaaggcttattccaagtgtttggaagttgatgaggcacttcaggtttttcgggaaatggggttgtatggatgtgagccgaatggttatacttatggttacattgccaaagggttgtgtgagaaggggagggtaggtcagggtttagggttttacaaggaaatgagagggaagggtttggtgcctagcagtagtacttatatggttgtaatttgcagtcttgctctggagcggagatatgaggatgcgagtaatgtcgtgtttgatatgttgagtaattctatgtctcctgatttgttaacttacaaaactttattggaaggattgtgccgggatgggaaaggtgaggaggcatttgatctactagagacttttaggagcagggatagagccatgaatgaaaagacatacaagacattgttaaatgcattgcattttgtaaatagggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

390

Amino Acids

44.49

Weight (kDa)

9.22

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25210
fragaria_vesca	FvH4_3g25580
malus_domestica	MD05G1166500.v1.1 MD10G1156500.v1.1
prunus_persica	Prupe.8G194300_v2.0.a1
pyrus_communis	pycom05g15510 pycom10g13470
rosa_chinensis	RchiOBHm_Chr5g0046411
rosa_laevigata	RLG00000034408
rosa_multiflora	Rmu_sc0003878.1_g000050
rosa_roxburghii	Rroxscaffold_1G00034990 Rroxscaffold_7G00197530
rosa_rugosa	Rorug05G0227800
rosa_samantha	Rh5AG309000 Rh5BG317200 Rh5CG343100 Rh5DG327400
rosa_wichuraiana	Rw0G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	901
AccBSI	CCGCTC	2 cut(s)	466, 952
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	2 cut(s)	21, 519
AccIII	TCCGGA	1 cut(s)	178
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	746
AcyI	GRCGYC	2 cut(s)	43, 264
AfaI	GTAC	2 cut(s)	533, 916
AfiI	CCNNNNNNNGG	3 cut(s)	251, 325, 427
AgsI	TTSAA	3 cut(s)	514, 547, 712
AhdI	GACNNNNNGTC	1 cut(s)	15
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw26I	GTCTC	3 cut(s)	569, 1011, 1082
AlwI	GGATC	2 cut(s)	287, 300
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	4 cut(s)	253, 273, 327, 394
ApeKI	GCWGC	2 cut(s)	334, 589
ApoI	RAATTY	1 cut(s)	547
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	339, 521
AspS9I	GGNCC	4 cut(s)	229, 254, 274, 328
AsuC2I	CCSGG	2 cut(s)	246, 1052
AsuHPI	GGTGA	5 cut(s)	19, 109, 128, 664, 1076
AsuII	TTCGAA	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BamHI	GGATCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	901
BbvI	GCAGC	2 cut(s)	346, 576
BccI	CCATC	2 cut(s)	315, 1049
BceAI	ACGGC	2 cut(s)	342, 409
BclI	TGATCA	2 cut(s)	375, 717
BcnI	CCSGG	2 cut(s)	246, 1052
BcoDI	GTCTC	3 cut(s)	569, 1011, 1082
BfaI	CTAG	2 cut(s)	906, 1085
BisI	GCNGC	7 cut(s)	159, 162, 165, 335, 397, 400, 590
BlsI	GCNGC	7 cut(s)	160, 163, 166, 336, 398, 401, 591
BmcAI	AGTACT	1 cut(s)	916
Bme1390I	CCNGG	2 cut(s)	246, 1052
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmgT120I	GGNCC	4 cut(s)	229, 254, 274, 328
BmiI	GGNNCC	3 cut(s)	230, 294, 903
BmrFI	CCNGG	2 cut(s)	246, 1052
BmsI	GCATC	3 cut(s)	495, 689, 955
BpmI	CTGGAG	2 cut(s)	227, 968
Bpu10I	CCTNAGC	1 cut(s)	605
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	2 cut(s)	246, 1052
BsaAI	YACGTR	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	380
BsaHI	GRCGYC	2 cut(s)	43, 264
BsaI	GGTCTC	1 cut(s)	569
BsaWI	WCCGGW	3 cut(s)	112, 178, 683
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 841, 871
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 325, 427
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	4 cut(s)	584, 599, 822, 1148
Bse8I	GATNNNNATC	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	178
BseGI	GGATG	4 cut(s)	680, 797, 970, 1060
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	3 cut(s)	251, 325, 427
BseMI	GCAATG	4 cut(s)	584, 599, 822, 1148
BseMII	CTCAG	2 cut(s)	52, 619
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	4 cut(s)	70, 142, 443, 1082
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	346, 576
BseYI	CCCAGC	1 cut(s)	330
Bsh1236I	CGCG	2 cut(s)	21, 519
Bsh1285I	CGRYCG	2 cut(s)	397, 650
BshFI	GGCC	4 cut(s)	255, 275, 329, 396
BshNI	GGYRCC	1 cut(s)	901
BsiEI	CGRYCG	2 cut(s)	397, 650
BsiSI	CCGG	7 cut(s)	5, 113, 179, 246, 441, 684, 1051
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	3 cut(s)	251, 325, 427
BsmAI	GTCTC	3 cut(s)	569, 1011, 1082
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	4 cut(s)	255, 275, 329, 396
Bso31I	GGTCTC	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	292, 375, 717, 1078
BspANI	GGCC	4 cut(s)	255, 275, 329, 396
BspCNI	CTCAG	2 cut(s)	51, 618
BspEI	TCCGGA	1 cut(s)	178
BspFNI	CGCG	2 cut(s)	21, 519
BspLI	GGNNCC	3 cut(s)	230, 294, 903
BspPI	GGATC	2 cut(s)	287, 300
BspQI	GCTCTTC	1 cut(s)	515
BspT104I	TTCGAA	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	901
BspTNI	GGTCTC	1 cut(s)	569
BsrBI	CCGCTC	2 cut(s)	466, 952
BsrDI	GCAATG	4 cut(s)	584, 599, 822, 1148
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	4 cut(s)	292, 375, 717, 1078
BssNI	GRCGYC	2 cut(s)	43, 264
Bst4CI	ACNGT	2 cut(s)	560, 628
Bst6I	CTCTTC	1 cut(s)	515
BstACI	GRCGYC	2 cut(s)	43, 264
BstAUI	TGTACA	1 cut(s)	531
BstBAI	YACGTR	1 cut(s)	91
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	38, 605
BstEII	GGTNACC	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	4 cut(s)	680, 797, 970, 1060
BstFNI	CGCG	2 cut(s)	21, 519
BstHHI	GCGC	2 cut(s)	339, 521
BstKTI	GATC	4 cut(s)	295, 378, 720, 1081
BstMAI	GTCTC	3 cut(s)	569, 1011, 1082
BstMBI	GATC	4 cut(s)	292, 375, 717, 1078
BstMCI	CGRYCG	2 cut(s)	397, 650
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 281, 405
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	244, 1050
BstUI	CGCG	2 cut(s)	21, 519
BstV1I	GCAGC	2 cut(s)	346, 576
BstX2I	RGATCY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	255, 275, 329, 396
BtsCI	GGATG	4 cut(s)	680, 797, 970, 1060
BtsIMutI	CAGTG	2 cut(s)	203, 624
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	339, 521
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	4 cut(s)	229, 254, 274, 328
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	532, 915
CviAII	CATG	4 cut(s)	225, 373, 635, 1114
CviQI	GTAC	2 cut(s)	532, 915
DdeI	CTNAG	2 cut(s)	38, 605
DpnI	GATC	4 cut(s)	294, 377, 719, 1080
DpnII	GATC	4 cut(s)	292, 375, 717, 1078
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	515
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	145
EclXI	CGGCCG	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	746
Eco91I	GGTNACC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	547
EcoT22I	ATGCAT	2 cut(s)	586, 1150
FaeI	CATG	4 cut(s)	228, 376, 638, 1117
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	4 cut(s)	224, 372, 634, 1113
FauI	CCCGC	2 cut(s)	92, 471
FbaI	TGATCA	2 cut(s)	375, 717
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	7 cut(s)	159, 162, 165, 335, 397, 400, 590
FokI	GGATG	4 cut(s)	667, 804, 977, 1067
Fsp4HI	GCNGC	7 cut(s)	159, 162, 165, 335, 397, 400, 590
FspBI	CTAG	2 cut(s)	906, 1085
GlaI	GCGC	2 cut(s)	338, 520
GluI	GCNGC	7 cut(s)	159, 162, 165, 335, 397, 400, 590
GsaI	CCCAGC	1 cut(s)	334
GsuI	CTGGAG	2 cut(s)	227, 968
HaeIII	GGCC	4 cut(s)	255, 275, 329, 396
HapII	CCGG	7 cut(s)	5, 113, 179, 246, 441, 684, 1051
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	2 cut(s)	339, 521
Hin1I	GRCGYC	2 cut(s)	43, 264
Hin1II	CATG	4 cut(s)	228, 376, 638, 1117
Hin6I	GCGC	2 cut(s)	337, 519
HinP1I	GCGC	2 cut(s)	337, 519
HincII	GTYRAC	2 cut(s)	268, 1020
HindII	GTYRAC	2 cut(s)	268, 1020
HinfI	GANTC	3 cut(s)	182, 249, 486
HpaI	GTTAAC	1 cut(s)	1020
HpaII	CCGG	7 cut(s)	5, 113, 179, 246, 441, 684, 1051
HphI	GGTGA	5 cut(s)	19, 109, 128, 664, 1076
Hpy166II	GTNNAC	3 cut(s)	268, 532, 1020
Hpy188I	TCNGA	5 cut(s)	41, 191, 292, 320, 553
Hpy188III	TCNNGA	8 cut(s)	179, 232, 296, 308, 607, 773, 947, 1010
Hpy8I	GTNNAC	3 cut(s)	268, 532, 1020
Hpy99I	CGWCG	5 cut(s)	13, 21, 266, 269, 272
HpyAV	CCTTC	5 cut(s)	114, 670, 838, 886, 1034
HpyCH4III	ACNGT	2 cut(s)	560, 628
HpyCH4IV	ACGT	4 cut(s)	11, 16, 90, 264
HpyCH4V	TGCA	4 cut(s)	584, 936, 1148, 1153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 281, 405
HpyF3I	CTNAG	2 cut(s)	38, 605
HpySE526I	ACGT	4 cut(s)	11, 16, 90, 264
Hsp92I	GRCGYC	2 cut(s)	43, 264
Hsp92II	CATG	4 cut(s)	228, 376, 638, 1117
HspAI	GCGC	2 cut(s)	337, 519
Kpn2I	TCCGGA	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	2 cut(s)	375, 717
KspAI	GTTAAC	1 cut(s)	1020
Kzo9I	GATC	4 cut(s)	292, 375, 717, 1078
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	3 cut(s)	443, 949, 1098
Lsp1109I	GCAGC	2 cut(s)	346, 576
LweI	GCATC	3 cut(s)	495, 689, 955
MaeI	CTAG	2 cut(s)	906, 1085
MaeII	ACGT	4 cut(s)	11, 16, 90, 264
MaeIII	GTNAC	4 cut(s)	12, 115, 126, 818
MalI	GATC	4 cut(s)	294, 377, 719, 1080
MbiI	CCGCTC	2 cut(s)	466, 952
MboI	GATC	4 cut(s)	292, 375, 717, 1078
MboII	GAAGA	2 cut(s)	502, 510
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	5 cut(s)	215, 547, 595, 930, 997
MlyI	GAGTC	1 cut(s)	176
Mph1103I	ATGCAT	2 cut(s)	586, 1150
MroI	TCCGGA	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	4 cut(s)	594, 615, 1019, 1142
MspI	CCGG	7 cut(s)	5, 113, 179, 246, 441, 684, 1051
MspR9I	CCNGG	2 cut(s)	246, 1052
MvnI	CGCG	2 cut(s)	21, 519
MwoI	GCNNNNNNNGC	3 cut(s)	164, 281, 405
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	246, 1052
NdeII	GATC	4 cut(s)	292, 375, 717, 1078
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	228, 376, 638, 1117
NlaIV	GGNNCC	3 cut(s)	230, 294, 903
NmuCI	GTSAC	2 cut(s)	115, 126
NsiI	ATGCAT	2 cut(s)	586, 1150
NspV	TTCGAA	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 656
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	249, 486
PkrI	GCNGC	7 cut(s)	160, 163, 166, 336, 398, 401, 591
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	91
PspEI	GGTNACC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	330
PspN4I	GGNNCC	3 cut(s)	230, 294, 903
PspPI	GGNCC	4 cut(s)	229, 254, 274, 328
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	533, 916
RsaNI	GTAC	2 cut(s)	532, 915
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	4 cut(s)	594, 615, 1019, 1142
SatI	GCNGC	7 cut(s)	159, 162, 165, 335, 397, 400, 590
Sau3AI	GATC	4 cut(s)	292, 375, 717, 1078
Sau96I	GGNCC	4 cut(s)	229, 254, 274, 328
ScaI	AGTACT	1 cut(s)	916
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	246, 1052
SfaNI	GCATC	3 cut(s)	495, 689, 955
SfuI	TTCGAA	1 cut(s)	219
SgrDI	CGTCGACG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	5 cut(s)	215, 547, 595, 930, 997
SspMI	CTAG	2 cut(s)	906, 1085
StyD4I	CCNGG	2 cut(s)	244, 1050
TaaI	ACNGT	2 cut(s)	560, 628
TaiI	ACGT	4 cut(s)	14, 19, 93, 267
TaqI	TCGA	5 cut(s)	219, 267, 309, 484, 665
TasI	AATT	5 cut(s)	215, 547, 595, 930, 997
TatI	WGTACW	2 cut(s)	531, 914
TauI	GCSGC	5 cut(s)	161, 164, 167, 399, 402
TfiI	GAWTC	2 cut(s)	249, 486
Tru1I	TTAA	4 cut(s)	594, 615, 1019, 1142
Tru9I	TTAA	4 cut(s)	594, 615, 1019, 1142
TscAI	CASTG	2 cut(s)	210, 631
TseFI	GTSAC	2 cut(s)	115, 126
TseI	GCWGC	2 cut(s)	334, 589
Tsp45I	GTSAC	2 cut(s)	115, 126
TspDTI	ATGAA	5 cut(s)	96, 588, 689, 1130, 1134
TspRI	CASTG	2 cut(s)	210, 631
VpaK11BI	GGWCC	1 cut(s)	229
XagI	CCTNNNNNAGG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	906, 1085
ZraI	GACGTC	1 cut(s)	265
ZrmI	AGTACT	1 cut(s)	916
Zsp2I	ATGCAT	2 cut(s)	586, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.