Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G25210 |
| fragaria_vesca | FvH4_3g25580 |
| malus_domestica | MD05G1166500.v1.1 MD10G1156500.v1.1 |
| prunus_persica | Prupe.8G194300_v2.0.a1 |
| pyrus_communis | pycom05g15510 pycom10g13470 |
| rosa_chinensis | RchiOBHm_Chr5g0046411 |
| rosa_laevigata | RLG00000034408 |
| rosa_multiflora | Rmu_sc0003878.1_g000050 |
| rosa_roxburghii | Rroxscaffold_1G00034990 Rroxscaffold_7G00197530 |
| rosa_rugosa | Rorug05G0227800 |
| rosa_samantha | Rh5AG309000 Rh5BG317200 Rh5CG343100 Rh5DG327400 |
| rosa_wichuraiana | Rw0G021510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 234 |
| Acc65I | GGTACC | 1 cut(s) | 315 |
| AccB1I | GGYRCC | 1 cut(s) | 315 |
| AccI | GTMKAC | 1 cut(s) | 234 |
| AciI | CCGC | 2 cut(s) | 313, 319 |
| AclWI | GGATC | 2 cut(s) | 254, 267 |
| AcyI | GRCGYC | 1 cut(s) | 231 |
| AfaI | GTAC | 1 cut(s) | 317 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 218, 340 |
| AgsI | TTSAA | 2 cut(s) | 24, 157 |
| AluBI | AGCT | 1 cut(s) | 359 |
| AluI | AGCT | 1 cut(s) | 359 |
| AlwI | GGATC | 2 cut(s) | 254, 267 |
| AoxI | GGCC | 1 cut(s) | 240 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 180, 212 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 152, 182 |
| Asp718I | GGTACC | 1 cut(s) | 315 |
| AspS9I | GGNCC | 3 cut(s) | 196, 221, 241 |
| AsuHPI | GGTGA | 2 cut(s) | 68, 274 |
| AsuII | TTCGAA | 1 cut(s) | 186 |
| AvaII | GGWCC | 2 cut(s) | 196, 221 |
| BamHI | GGATCC | 1 cut(s) | 259 |
| BanI | GGYRCC | 1 cut(s) | 315 |
| BclI | TGATCA | 1 cut(s) | 288 |
| BfaI | CTAG | 1 cut(s) | 173 |
| Bme18I | GGWCC | 2 cut(s) | 196, 221 |
| BmgT120I | GGNCC | 3 cut(s) | 196, 221, 241 |
| BmiI | GGNNCC | 3 cut(s) | 197, 261, 317 |
| BmsI | GCATC | 1 cut(s) | 408 |
| Bpu14I | TTCGAA | 1 cut(s) | 186 |
| BpuEI | CTTGAG | 1 cut(s) | 359 |
| BsaAI | YACGTR | 1 cut(s) | 50 |
| BsaBI | GATNNNNATC | 1 cut(s) | 293 |
| BsaHI | GRCGYC | 1 cut(s) | 231 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 218, 340 |
| Bse8I | GATNNNNATC | 1 cut(s) | 293 |
| BseJI | GATNNNNATC | 1 cut(s) | 293 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 218, 340 |
| BseRI | GAGGAG | 7 cut(s) | 29, 100, 103, 106, 109, 112, 356 |
| Bsh1285I | CGRYCG | 1 cut(s) | 310 |
| BshFI | GGCC | 1 cut(s) | 242 |
| BshNI | GGYRCC | 1 cut(s) | 315 |
| BsiEI | CGRYCG | 1 cut(s) | 310 |
| BsiSI | CCGG | 1 cut(s) | 354 |
| BslFI | GGGAC | 1 cut(s) | 359 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 218, 340 |
| BsmFI | GGGAC | 1 cut(s) | 359 |
| BsnI | GGCC | 1 cut(s) | 242 |
| Bsp119I | TTCGAA | 1 cut(s) | 186 |
| Bsp143I | GATC | 2 cut(s) | 259, 288 |
| BspACI | CCGC | 2 cut(s) | 313, 319 |
| BspANI | GGCC | 1 cut(s) | 242 |
| BspLI | GGNNCC | 3 cut(s) | 197, 261, 317 |
| BspPI | GGATC | 2 cut(s) | 254, 267 |
| BspQI | GCTCTTC | 1 cut(s) | 428 |
| BspT104I | TTCGAA | 1 cut(s) | 186 |
| BspT107I | GGYRCC | 1 cut(s) | 315 |
| BssMI | GATC | 2 cut(s) | 259, 288 |
| BssNI | GRCGYC | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 2 cut(s) | 308, 373 |
| Bst6I | CTCTTC | 2 cut(s) | 25, 428 |
| BstACI | GRCGYC | 1 cut(s) | 231 |
| BstBAI | YACGTR | 1 cut(s) | 50 |
| BstBI | TTCGAA | 1 cut(s) | 186 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 338 |
| BstKTI | GATC | 2 cut(s) | 262, 291 |
| BstMBI | GATC | 2 cut(s) | 259, 288 |
| BstMCI | CGRYCG | 1 cut(s) | 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 248 |
| BstX2I | RGATCY | 1 cut(s) | 259 |
| BstYI | RGATCY | 1 cut(s) | 259 |
| BsuRI | GGCC | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 3 cut(s) | 196, 221, 241 |
| Csp6I | GTAC | 1 cut(s) | 316 |
| CviAII | CATG | 2 cut(s) | 192, 286 |
| CviJI | RGCY | 3 cut(s) | 242, 251, 359 |
| CviKI_1 | RGCY | 3 cut(s) | 242, 251, 359 |
| CviQI | GTAC | 1 cut(s) | 316 |
| DpnI | GATC | 2 cut(s) | 261, 290 |
| DpnII | GATC | 2 cut(s) | 259, 288 |
| Eam1104I | CTCTTC | 2 cut(s) | 25, 428 |
| EarI | CTCTTC | 2 cut(s) | 25, 428 |
| Eco47I | GGWCC | 2 cut(s) | 196, 221 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 338 |
| EcoO109I | RGGNCCY | 1 cut(s) | 241 |
| FaeI | CATG | 2 cut(s) | 195, 289 |
| FaiI | YATR | 4 cut(s) | 104, 193, 287, 384 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 407 |
| FaqI | GGGAC | 1 cut(s) | 359 |
| FatI | CATG | 2 cut(s) | 191, 285 |
| FbaI | TGATCA | 1 cut(s) | 288 |
| FblI | GTMKAC | 1 cut(s) | 234 |
| FspBI | CTAG | 1 cut(s) | 173 |
| HaeIII | GGCC | 1 cut(s) | 242 |
| HapII | CCGG | 1 cut(s) | 354 |
| Hin1I | GRCGYC | 1 cut(s) | 231 |
| Hin1II | CATG | 2 cut(s) | 195, 289 |
| HincII | GTYRAC | 1 cut(s) | 235 |
| HindII | GTYRAC | 1 cut(s) | 235 |
| HinfI | GANTC | 1 cut(s) | 216 |
| HpaII | CCGG | 1 cut(s) | 354 |
| HphI | GGTGA | 2 cut(s) | 68, 274 |
| Hpy166II | GTNNAC | 3 cut(s) | 76, 224, 235 |
| Hpy188I | TCNGA | 2 cut(s) | 147, 259 |
| Hpy188III | TCNNGA | 2 cut(s) | 199, 263 |
| Hpy8I | GTNNAC | 3 cut(s) | 76, 224, 235 |
| Hpy99I | CGWCG | 3 cut(s) | 233, 236, 239 |
| HpyCH4III | ACNGT | 2 cut(s) | 308, 373 |
| HpyCH4IV | ACGT | 2 cut(s) | 49, 231 |
| HpyCH4V | TGCA | 1 cut(s) | 429 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 248 |
| HpySE526I | ACGT | 2 cut(s) | 49, 231 |
| Hsp92I | GRCGYC | 1 cut(s) | 231 |
| Hsp92II | CATG | 2 cut(s) | 195, 289 |
| KpnI | GGTACC | 1 cut(s) | 319 |
| Ksp22I | TGATCA | 1 cut(s) | 288 |
| Kzo9I | GATC | 2 cut(s) | 259, 288 |
| LguI | GCTCTTC | 1 cut(s) | 428 |
| LmnI | GCTCC | 1 cut(s) | 356 |
| LpnPI | CCDG | 4 cut(s) | 212, 226, 257, 367 |
| LweI | GCATC | 1 cut(s) | 408 |
| MaeI | CTAG | 1 cut(s) | 173 |
| MaeII | ACGT | 2 cut(s) | 49, 231 |
| MaeIII | GTNAC | 1 cut(s) | 84 |
| MalI | GATC | 2 cut(s) | 261, 290 |
| MboI | GATC | 2 cut(s) | 259, 288 |
| MboII | GAAGA | 2 cut(s) | 12, 415 |
| MflI | RGATCY | 1 cut(s) | 259 |
| MluCI | AATT | 1 cut(s) | 182 |
| MroXI | GAANNNNTTC | 2 cut(s) | 152, 182 |
| MspI | CCGG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 248 |
| NdeII | GATC | 2 cut(s) | 259, 288 |
| NlaIII | CATG | 2 cut(s) | 195, 289 |
| NlaIV | GGNNCC | 3 cut(s) | 197, 261, 317 |
| NmuCI | GTSAC | 1 cut(s) | 84 |
| NspV | TTCGAA | 1 cut(s) | 186 |
| PciSI | GCTCTTC | 1 cut(s) | 428 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 55, 225 |
| PdmI | GAANNNNTTC | 2 cut(s) | 152, 182 |
| PfeI | GAWTC | 1 cut(s) | 216 |
| Ppu21I | YACGTR | 1 cut(s) | 50 |
| PspN4I | GGNNCC | 3 cut(s) | 197, 261, 317 |
| PspPI | GGNCC | 3 cut(s) | 196, 221, 241 |
| PsuI | RGATCY | 1 cut(s) | 259 |
| RsaI | GTAC | 1 cut(s) | 317 |
| RsaNI | GTAC | 1 cut(s) | 316 |
| SalI | GTCGAC | 1 cut(s) | 233 |
| SapI | GCTCTTC | 1 cut(s) | 428 |
| Sau3AI | GATC | 2 cut(s) | 259, 288 |
| Sau96I | GGNCC | 3 cut(s) | 196, 221, 241 |
| SetI | ASST | 7 cut(s) | 52, 81, 234, 278, 282, 348, 361 |
| SfaNI | GCATC | 1 cut(s) | 408 |
| SfuI | TTCGAA | 1 cut(s) | 186 |
| SgrDI | CGTCGACG | 1 cut(s) | 233 |
| SinI | GGWCC | 2 cut(s) | 196, 221 |
| SmlI | CTYRAG | 1 cut(s) | 338 |
| SmoI | CTYRAG | 1 cut(s) | 338 |
| Sse9I | AATT | 1 cut(s) | 182 |
| SsiI | CCGC | 2 cut(s) | 313, 319 |
| SspMI | CTAG | 1 cut(s) | 173 |
| TaaI | ACNGT | 2 cut(s) | 308, 373 |
| TaiI | ACGT | 2 cut(s) | 52, 234 |
| TaqI | TCGA | 3 cut(s) | 186, 234, 397 |
| TaqII | GACCGA | 1 cut(s) | 209 |
| TasI | AATT | 1 cut(s) | 182 |
| TfiI | GAWTC | 1 cut(s) | 216 |
| TseFI | GTSAC | 1 cut(s) | 84 |
| Tsp45I | GTSAC | 1 cut(s) | 84 |
| TspDTI | ATGAA | 1 cut(s) | 91 |
| VpaK11BI | GGWCC | 2 cut(s) | 196, 221 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 338 |
| XmiI | GTMKAC | 1 cut(s) | 234 |
| XmnI | GAANNNNTTC | 2 cut(s) | 152, 182 |
| XspI | CTAG | 1 cut(s) | 173 |
| ZraI | GACGTC | 1 cut(s) | 232 |