pycom05g15510

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013547
Physical Location & Seq
Reverse (-)
19062971 .. 19064511
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g15510.2

Sequence Viewer

Length: 1260 bp
ATGACGGTGACTTTACGCCGCCTTCTCACCGGCCTCACTGCCACTATCAGAAACCCCAATGCTCACTCTCCTCCACTCCCACCTATCCCCTATCGCCACGTTCACCGCCACCCGTCTTTTCCGTCCTCCCTCGCGTCACTCTATCTCAACCACCGCCTCTTTTCCTCCTCACCCACCGAAAACTTTATCCCAACAAACCCGCTCCGCACCCGAACCCCGCTAGAAAAACAATTCGAGACATGGGTTCAGAAGCTCAAACCGGGGTTCGGGCCACCCGAAGTGAACGAAGCACTGAAAGCCCAATCGGACCCGGATCTCGCCCTCGACATTTTCCGGTGGACCTCCCAGCAGCGGAACTACAAGCACAACCACGCCACATACCTCACCATGATCAGAATCTTGCTCGACGGCAGACGCTACCGCCACGCCGAAACCCTGGTGGAAGAGGTAATCGCCGGCGCCTGTGAAATTAGCGTGCCCCTTTACAATTCCATGATTCGATTTTGCTGCGGGAGAAAGCTGCTTTTCAATCGTGCTTTTGATGTTTATAAGAAAATGTTGAATTCCGAGAATTGCAAACCGAATCTGGAAACTTATGCATTGCTGCTCAACTCTTTGCTTAGGAGGTTTAATAATATGCATGTTTGCTATGTCTACTTGCGCGCCGTGCGGTCTTTGTCGAAGCAGATGAAGGCTTGCGGTGTGATTCCGGATACGTTTGTTGATGATGCAATGCATGTATTTCGCGAAATGGGGTTGTACGGATGTGAGCCGAACGCCTATACTTATGGTTACATTGCTAAGGGGCTATGTGAGAAGGGGAGGGTAGCTCAGGGTTTAGGGTTTTACAAGGAAATGAGAGGAAAAGGGTTGGTGCCCAGCAGTAGTACATATATGATTGTGATTTGCAGTCTCGCTATGGGACACAAGTATGATGATGCAATTGAGGTCGTGCTTGATATGTTGAGGAATGCCATGTCTCCTGATTTGTTAACTTACAAGACGTTATTGGAAGGATTGTGCCGGGATGGGAAGGGCGTCGAGGCATTTGATCTACTAGAGGATTTGCGGAGGAAGGATATTGGGATCGCTCAGAACGTTAATTTATGCCTTTCAAGGATACATTGGAGTCGAAGTGTAATTTGGAGGATAGTAGAGTTTACATGTATGCTGGAGGTGCTGGTAAACATGTCAAATTTCAAGAAGTTGGAACTGAGTGAATTCTTTTTCGGAGGAAGTGATCTTGCAGTCGTCTGTTAG

Protein Analysis

420

Amino Acids

47.9

Weight (kDa)

9.06

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25210
fragaria_vesca FvH4_3g25580
malus_domestica MD05G1166500.v1.1 MD10G1156500.v1.1
prunus_persica Prupe.8G194300_v2.0.a1
pyrus_communis pycom05g15510 pycom10g13470
rosa_chinensis RchiOBHm_Chr5g0046411
rosa_laevigata RLG00000034408
rosa_multiflora Rmu_sc0003878.1_g000050
rosa_roxburghii Rroxscaffold_1G00034990 Rroxscaffold_7G00197530
rosa_rugosa Rorug05G0227800
rosa_samantha Rh5AG309000 Rh5BG317200 Rh5CG343100 Rh5DG327400
rosa_wichuraiana Rw0G021510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 458, 874
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 654
AccII CGCG 3 cut(s) 134, 663, 747
AccIII TCCGGA 1 cut(s) 709
AclI AACGTT 1 cut(s) 1098
AclWI GGATC 2 cut(s) 321, 1094
AcsI RAATTY 3 cut(s) 562, 1195, 1220
AcyI GRCGYC 2 cut(s) 459, 1038
AfaI GTAC 2 cut(s) 761, 889
AfiI CCNNNNNNNGG 2 cut(s) 266, 351
AflIII ACRYGT 2 cut(s) 1163, 1188
AgsI TTSAA 4 cut(s) 529, 562, 1116, 1201
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 2 cut(s) 1126, 1158
AluBI AGCT 3 cut(s) 253, 520, 830
AluI AGCT 3 cut(s) 253, 520, 830
Alw26I GTCTC 3 cut(s) 230, 917, 984
AlwI GGATC 2 cut(s) 321, 1094
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 2 cut(s) 31, 269
ApeKI GCWGC 4 cut(s) 349, 507, 520, 604
ApoI RAATTY 3 cut(s) 562, 1195, 1220
AspLEI GCGC 3 cut(s) 461, 663, 665
AspS9I GGNCC 3 cut(s) 269, 307, 339
AsuC2I CCSGG 3 cut(s) 261, 311, 1025
AsuHPI GGTGA 5 cut(s) 19, 19, 95, 162, 376
AvaII GGWCC 2 cut(s) 307, 339
BaeGI GKGCMC 2 cut(s) 480, 879
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BanI GGYRCC 2 cut(s) 458, 874
BbvI GCAGC 4 cut(s) 361, 494, 507, 591
BccI CCATC 1 cut(s) 1022
BceAI ACGGC 2 cut(s) 424, 650
BcgI CGANNNNNNTGC 4 cut(s) 489, 523, 725, 759
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 2 cut(s) 706, 1113
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 3 cut(s) 261, 311, 1025
BcoDI GTCTC 3 cut(s) 230, 917, 984
BfaI CTAG 2 cut(s) 221, 1058
BfoI RGCGCY 1 cut(s) 462
BfuI GTATCC 2 cut(s) 706, 1113
BisI GCNGC 5 cut(s) 19, 350, 508, 521, 605
BlsI GCNGC 5 cut(s) 20, 351, 509, 522, 606
Bme1390I CCNGG 4 cut(s) 261, 311, 437, 1025
Bme18I GGWCC 2 cut(s) 307, 339
BmgT120I GGNCC 3 cut(s) 269, 307, 339
BmiI GGNNCC 3 cut(s) 309, 460, 876
BmrFI CCNGG 4 cut(s) 261, 311, 437, 1025
BmsI GCATC 2 cut(s) 718, 928
BplI GAGNNNNNCTC 2 cut(s) 814, 846
BpmI CTGGAG 1 cut(s) 1193
Bpu10I CCTNAGC 3 cut(s) 620, 801, 831
BpuMI CCSGG 3 cut(s) 261, 311, 1025
BsaBI GATNNNNATC 1 cut(s) 395
BsaHI GRCGYC 2 cut(s) 459, 1038
BsaJI CCNNGG 2 cut(s) 260, 435
BsaWI WCCGGW 2 cut(s) 333, 709
BsaXI ACNNNNNCTCC 2 cut(s) 1120, 1150
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 351
Bse118I RCCGGY 2 cut(s) 29, 455
Bse3DI GCAATG 3 cut(s) 599, 738, 795
Bse8I GATNNNNATC 1 cut(s) 395
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 260, 435
BseGI GGATG 2 cut(s) 770, 1033
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 266, 351
BseMI GCAATG 3 cut(s) 599, 738, 795
BseMII CTCAG 3 cut(s) 845, 1106, 1205
BsePI GCGCGC 1 cut(s) 661
BseRI GAGGAG 2 cut(s) 60, 157
BseSI GKGCMC 2 cut(s) 480, 879
BseXI GCAGC 4 cut(s) 361, 494, 507, 591
BseYI CCCAGC 2 cut(s) 345, 878
Bsh1236I CGCG 3 cut(s) 134, 663, 747
BshFI GGCC 2 cut(s) 33, 271
BshNI GGYRCC 2 cut(s) 458, 874
BsiSI CCGG 7 cut(s) 30, 260, 311, 334, 456, 710, 1024
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 2 cut(s) 266, 351
BsmAI GTCTC 3 cut(s) 230, 917, 984
BsmFI GGGAC 1 cut(s) 936
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 2 cut(s) 33, 271
Bsp1286I GDGCHC 2 cut(s) 480, 879
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 5 cut(s) 313, 390, 1051, 1086, 1240
Bsp68I TCGCGA 1 cut(s) 747
BspANI GGCC 2 cut(s) 33, 271
BspCNI CTCAG 3 cut(s) 844, 1105, 1206
BspEI TCCGGA 1 cut(s) 709
BspFNI CGCG 3 cut(s) 134, 663, 747
BspLI GGNNCC 3 cut(s) 309, 460, 876
BspPI GGATC 2 cut(s) 321, 1094
BspT107I GGYRCC 2 cut(s) 458, 874
BsrBI CCGCTC 1 cut(s) 202
BsrDI GCAATG 3 cut(s) 599, 738, 795
BsrFI RCCGGY 2 cut(s) 29, 455
BssAI RCCGGY 2 cut(s) 29, 455
BssECI CCNNGG 2 cut(s) 260, 435
BssHII GCGCGC 1 cut(s) 661
BssMI GATC 5 cut(s) 313, 390, 1051, 1086, 1240
BssNI GRCGYC 2 cut(s) 459, 1038
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 2 cut(s) 459, 1038
BstC8I GCNNGC 4 cut(s) 457, 476, 663, 697
BstDEI CTNAG 5 cut(s) 620, 801, 831, 1092, 1214
BstF5I GGATG 2 cut(s) 770, 1033
BstFNI CGCG 3 cut(s) 134, 663, 747
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 3 cut(s) 461, 663, 665
BstKTI GATC 5 cut(s) 316, 393, 1054, 1089, 1243
BstMAI GTCTC 3 cut(s) 230, 917, 984
BstMBI GATC 5 cut(s) 313, 390, 1051, 1086, 1240
BstMWI GCNNNNNNNGC 3 cut(s) 296, 667, 1177
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 4 cut(s) 644, 740, 1167, 1192
BstSCI CCNGG 4 cut(s) 259, 309, 435, 1023
BstSLI GKGCMC 2 cut(s) 480, 879
BstUI CGCG 3 cut(s) 134, 663, 747
BstV1I GCAGC 4 cut(s) 361, 494, 507, 591
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 2 cut(s) 706, 1113
BsuRI GGCC 2 cut(s) 33, 271
BtsCI GGATG 2 cut(s) 770, 1033
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 36, 290
BtuMI TCGCGA 1 cut(s) 747
Cac8I GCNNGC 4 cut(s) 457, 476, 663, 697
CfoI GCGC 3 cut(s) 461, 663, 665
Cfr10I RCCGGY 2 cut(s) 29, 455
Cfr13I GGNCC 3 cut(s) 269, 307, 339
CseI GACGC 3 cut(s) 123, 423, 1027
Csp6I GTAC 2 cut(s) 760, 888
CviAII CATG 8 cut(s) 240, 388, 493, 641, 737, 976, 1164, 1189
CviJI RGCY 9 cut(s) 33, 253, 271, 299, 520, 695, 772, 808, 830
CviKI_1 RGCY 9 cut(s) 33, 253, 271, 299, 520, 695, 772, 808, 830
CviQI GTAC 2 cut(s) 760, 888
DdeI CTNAG 5 cut(s) 620, 801, 831, 1092, 1214
DinI GGCGCC 1 cut(s) 460
DpnI GATC 5 cut(s) 315, 392, 1053, 1088, 1242
DpnII GATC 5 cut(s) 313, 390, 1051, 1086, 1240
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco47I GGWCC 2 cut(s) 307, 339
EcoRI GAATTC 2 cut(s) 562, 1220
EcoRII CCWGG 1 cut(s) 435
EcoT22I ATGCAT 3 cut(s) 601, 642, 738
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
FaeI CATG 8 cut(s) 243, 391, 496, 644, 740, 979, 1167, 1192
FaqI GGGAC 1 cut(s) 936
FatI CATG 8 cut(s) 239, 387, 492, 640, 736, 975, 1163, 1188
FauI CCCGC 3 cut(s) 207, 225, 503
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 5 cut(s) 19, 350, 508, 521, 605
FokI GGATG 2 cut(s) 777, 1040
Fsp4HI GCNGC 5 cut(s) 19, 350, 508, 521, 605
FspBI CTAG 2 cut(s) 221, 1058
GlaI GCGC 3 cut(s) 460, 662, 664
GluI GCNGC 5 cut(s) 19, 350, 508, 521, 605
GsaI CCCAGC 2 cut(s) 349, 882
GsuI CTGGAG 1 cut(s) 1193
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 2 cut(s) 33, 271
HapII CCGG 7 cut(s) 30, 260, 311, 334, 456, 710, 1024
HgaI GACGC 3 cut(s) 123, 423, 1027
HhaI GCGC 3 cut(s) 461, 663, 665
Hin1I GRCGYC 2 cut(s) 459, 1038
Hin1II CATG 8 cut(s) 243, 391, 496, 644, 740, 979, 1167, 1192
Hin6I GCGC 3 cut(s) 459, 661, 663
HinP1I GCGC 3 cut(s) 459, 661, 663
HincII GTYRAC 1 cut(s) 993
HindII GTYRAC 1 cut(s) 993
HinfI GANTC 5 cut(s) 396, 496, 583, 706, 1129
HpaI GTTAAC 1 cut(s) 993
HpaII CCGG 7 cut(s) 30, 260, 311, 334, 456, 710, 1024
HphI GGTGA 5 cut(s) 19, 19, 95, 162, 376
Hpy166II GTNNAC 7 cut(s) 103, 283, 339, 655, 993, 1161, 1186
Hpy188I TCNGA 7 cut(s) 50, 249, 307, 395, 568, 1095, 1232
Hpy188III TCNNGA 6 cut(s) 235, 587, 710, 746, 983, 1201
Hpy8I GTNNAC 7 cut(s) 103, 283, 339, 655, 993, 1161, 1186
Hpy99I CGWCG 2 cut(s) 410, 1043
HpyAV CCTTC 6 cut(s) 32, 685, 811, 1007, 1027, 1069
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 4 cut(s) 99, 716, 1004, 1098
HpyCH4V TGCA 8 cut(s) 576, 599, 640, 731, 736, 909, 941, 1247
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 667, 1177
HpyF3I CTNAG 5 cut(s) 620, 801, 831, 1092, 1214
HpySE526I ACGT 4 cut(s) 99, 716, 1004, 1098
Hsp92I GRCGYC 2 cut(s) 459, 1038
Hsp92II CATG 8 cut(s) 243, 391, 496, 644, 740, 979, 1167, 1192
HspAI GCGC 3 cut(s) 459, 661, 663
KasI GGCGCC 1 cut(s) 458
Kpn2I TCCGGA 1 cut(s) 709
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 390
KspAI GTTAAC 1 cut(s) 993
Kzo9I GATC 5 cut(s) 313, 390, 1051, 1086, 1240
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 4 cut(s) 361, 494, 507, 591
LweI GCATC 2 cut(s) 718, 928
MaeI CTAG 2 cut(s) 221, 1058
MaeII ACGT 4 cut(s) 99, 716, 1004, 1098
MaeIII GTNAC 3 cut(s) 7, 135, 791
MalI GATC 5 cut(s) 315, 392, 1053, 1088, 1242
MbiI CCGCTC 1 cut(s) 202
MboI GATC 5 cut(s) 313, 390, 1051, 1086, 1240
MboII GAAGA 1 cut(s) 455
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 480, 879
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 1 cut(s) 1138
MmeI TCCRAC 1 cut(s) 1188
Mph1103I ATGCAT 3 cut(s) 601, 642, 738
MreI CGCCGGCG 1 cut(s) 455
MroI TCCGGA 1 cut(s) 709
MroNI GCCGGC 1 cut(s) 455
MseI TTAA 3 cut(s) 630, 992, 1101
MslI CAYNNNNRTG 1 cut(s) 930
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 7 cut(s) 30, 260, 311, 334, 456, 710, 1024
MspR9I CCNGG 4 cut(s) 261, 311, 437, 1025
MunI CAATTG 1 cut(s) 942
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 3 cut(s) 134, 663, 747
MwoI GCNNNNNNNGC 3 cut(s) 296, 667, 1177
NaeI GCCGGC 1 cut(s) 457
NarI GGCGCC 1 cut(s) 459
NciI CCSGG 3 cut(s) 261, 311, 1025
NdeII GATC 5 cut(s) 313, 390, 1051, 1086, 1240
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 8 cut(s) 243, 391, 496, 644, 740, 979, 1167, 1192
NlaIV GGNNCC 3 cut(s) 309, 460, 876
NmuCI GTSAC 2 cut(s) 7, 135
NruI TCGCGA 1 cut(s) 747
NsiI ATGCAT 3 cut(s) 601, 642, 738
NspI RCATGY 4 cut(s) 644, 740, 1167, 1192
PauI GCGCGC 1 cut(s) 661
PciI ACATGT 2 cut(s) 1163, 1188
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 1095
PctI GAATGC 1 cut(s) 976
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 396, 496, 583, 706
PkrI GCNGC 5 cut(s) 20, 351, 509, 522, 606
PleI GAGTC 1 cut(s) 1137
PluTI GGCGCC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 1137
PscI ACATGT 2 cut(s) 1163, 1188
PsiI TTATAA 1 cut(s) 549
Psp1406I AACGTT 1 cut(s) 1098
Psp6I CCWGG 1 cut(s) 435
PspFI CCCAGC 2 cut(s) 345, 878
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 309, 460, 876
PspPI GGNCC 3 cut(s) 269, 307, 339
PsuI RGATCY 1 cut(s) 313
PteI GCGCGC 1 cut(s) 661
RruI TCGCGA 1 cut(s) 747
RsaI GTAC 2 cut(s) 761, 889
RsaNI GTAC 2 cut(s) 760, 888
RseI CAYNNNNRTG 1 cut(s) 930
SaqAI TTAA 3 cut(s) 630, 992, 1101
SatI GCNGC 5 cut(s) 19, 350, 508, 521, 605
Sau3AI GATC 5 cut(s) 313, 390, 1051, 1086, 1240
Sau96I GGNCC 3 cut(s) 269, 307, 339
SchI GAGTC 1 cut(s) 1138
ScrFI CCNGG 4 cut(s) 261, 311, 437, 1025
SduI GDGCHC 2 cut(s) 480, 879
SfaNI GCATC 2 cut(s) 718, 928
SfoI GGCGCC 1 cut(s) 460
SgrAI CRCCGGYG 1 cut(s) 455
SinI GGWCC 2 cut(s) 307, 339
SmiMI CAYNNNNRTG 1 cut(s) 930
SspDI GGCGCC 1 cut(s) 458
SspMI CTAG 2 cut(s) 221, 1058
StyD4I CCNGG 4 cut(s) 259, 309, 435, 1023
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 4 cut(s) 102, 719, 1007, 1101
TaqI TCGA 7 cut(s) 234, 324, 405, 499, 680, 1041, 1132
TatI WGTACW 1 cut(s) 887
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 4 cut(s) 396, 496, 583, 706
Tru1I TTAA 3 cut(s) 630, 992, 1101
Tru9I TTAA 3 cut(s) 630, 992, 1101
TscAI CASTG 2 cut(s) 43, 297
TseFI GTSAC 2 cut(s) 7, 135
TseI GCWGC 4 cut(s) 349, 507, 520, 604
Tsp45I GTSAC 2 cut(s) 7, 135
TspDTI ATGAA 1 cut(s) 704
TspGWI ACGGA 2 cut(s) 111, 777
TspRI CASTG 2 cut(s) 43, 297
VpaK11BI GGWCC 2 cut(s) 307, 339
XapI RAATTY 3 cut(s) 562, 1195, 1220
XceI RCATGY 4 cut(s) 644, 740, 1167, 1192
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 221, 1058
Zsp2I ATGCAT 3 cut(s) 601, 642, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.