Rh5CG343100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013547
Physical Location & Seq
Forward (+)
39453440 .. 39455416
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG343100.1

Sequence Viewer

Length: 1170 bp
ATGCAGGCGACGTTACGTCGCGCTCTCACCGCTACTCTCAGACGCCCCAATATCCTCTTTCCTCAACGCCCACCTCTCTCCTCCCGCCACGTAATCCCTGACCCTTCATTTCCGTTCACCCTCCCGTCACTCTATCACCGCCTCCTATCCTCCTCCTCCGCCGCCCAAAACCCTCCGGACTCATTCCGAACCCGAACCCCACTGGAGAAGCAATTCGAAACATGGGTCCAGAAACTCAAACCCGGATTCGGCCCACCCGACGTCGACGAGGCCCTGAAAGCCCAATCGGATCCCGACCTCGCTCTCGACATTTTCCGATGGACGGCCCAGCAGCGCAACTACAAGCACAACCACTCCACCTACCTCACCATGATCAAAATCCTAATCAACGGCCGCCGCTACCGCCACGCCGAAACCCTACTTGAGGAGGTGGTCGCCGGAGCTTGTGAGATAAGTGTCCCACTCTATAACTCCATTATTCGATTCTGTTGTGGAAGAAAGATGCTCTTCAATCGTGCTTTTGATGTGTACAAGAAAATGTTGAATTCGGAGAACTGTAAGCCCACATTGGAGACCTATGCATTGCTGCTTAATTCATTGCTCAGGAGGTTTAATAATATAACTGTTTGCCATGTGTATTTGCGGTCGGTGAGGTCGTTGTCGAAGCAAATGAAGGCATCCGGTGTGATACCGGATACTTTTGTGTTGAATATGATCATCAAGGCTTATTCCAAGTGTTTGGAAGTTGATGAGGCACTTCAGGTTTTTCGGGAAATGGGGTTGTATGGATGTGAGCCGAATGGTTATACTTATGGTTACATTGCCAAAGGGTTGTGTGAGAAGGGGAGGGTAGGTCAGGGTTTAGGGTTTTACAAGGAAATGAGAGGGAAGGGTTTGGTGCCTAGCAGTAGTACTTATATGGTTGTAATTTGCAGTCTTGCTCTGGAGCGGAGATATGAGGATGCGAGTAATGTCGTGTTTGATATGTTGAGTAATTCTATGTCTCCTGATTTGTTAACTTACAAAACTTTATTGGAAGGATTGTGCCGGGATGGAAAAGGTGAGGAGGCATTTGATCTACTAGAGACTTTTAGGAGCAGGGATAGAGCCATGAATGAAAAGACATACAAGACATTGTTAAATGCATTGCATTTTGTAAATAGGGAGTAA

Protein Analysis

389

Amino Acids

44.48

Weight (kDa)

9.28

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 153 - 201 1.4e-06 PPR repeat family
PPR_long PF17177 164 - 287 9e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 231 - 279 8.8e-13 PPR repeat family
PPR_long PF17177 287 - 382 1.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 301 - 350 6.6e-08 PPR repeat family
PPR_1 PF12854 334 - 362 7.1e-08 PPR repeat
PPR_2 PF13041 336 - 383 6e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25210
fragaria_vesca FvH4_3g25580
malus_domestica MD05G1166500.v1.1 MD10G1156500.v1.1
prunus_persica Prupe.8G194300_v2.0.a1
pyrus_communis pycom05g15510 pycom10g13470
rosa_chinensis RchiOBHm_Chr5g0046411
rosa_laevigata RLG00000034408
rosa_multiflora Rmu_sc0003878.1_g000050
rosa_roxburghii Rroxscaffold_1G00034990 Rroxscaffold_7G00197530
rosa_rugosa Rorug05G0227800
rosa_samantha Rh5AG309000 Rh5BG317200 Rh5CG343100 Rh5DG327400
rosa_wichuraiana Rw0G021510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 898
AccBSI CCGCTC 1 cut(s) 949
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 175
AclWI GGATC 2 cut(s) 284, 297
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 743
AcyI GRCGYC 2 cut(s) 43, 261
AfaI GTAC 2 cut(s) 530, 913
AfiI CCNNNNNNNGG 3 cut(s) 248, 322, 424
AgsI TTSAA 3 cut(s) 511, 544, 709
AhdI GACNNNNNGTC 1 cut(s) 15
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
Alw26I GTCTC 3 cut(s) 566, 1008, 1079
AlwI GGATC 2 cut(s) 284, 297
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 4 cut(s) 250, 270, 324, 391
ApeKI GCWGC 2 cut(s) 331, 586
ApoI RAATTY 1 cut(s) 544
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 23, 336
AspS9I GGNCC 4 cut(s) 226, 251, 271, 325
AsuC2I CCSGG 2 cut(s) 243, 1049
AsuHPI GGTGA 6 cut(s) 19, 109, 128, 358, 661, 1073
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 226
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 898
BbvI GCAGC 2 cut(s) 343, 573
BccI CCATC 2 cut(s) 312, 1046
BceAI ACGGC 2 cut(s) 339, 406
BciVI GTATCC 1 cut(s) 688
BclI TGATCA 2 cut(s) 372, 714
BcnI CCSGG 2 cut(s) 243, 1049
BcoDI GTCTC 3 cut(s) 566, 1008, 1079
BfaI CTAG 2 cut(s) 903, 1082
BfuI GTATCC 1 cut(s) 688
BisI GCNGC 5 cut(s) 162, 332, 394, 397, 587
BlsI GCNGC 5 cut(s) 163, 333, 395, 398, 588
BmcAI AGTACT 1 cut(s) 913
Bme1390I CCNGG 2 cut(s) 243, 1049
Bme18I GGWCC 1 cut(s) 226
BmeRI GACNNNNNGTC 1 cut(s) 15
BmgT120I GGNCC 4 cut(s) 226, 251, 271, 325
BmiI GGNNCC 3 cut(s) 227, 291, 900
BmrFI CCNGG 2 cut(s) 243, 1049
BmsI GCATC 3 cut(s) 492, 686, 952
BpmI CTGGAG 2 cut(s) 224, 965
Bpu10I CCTNAGC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 2 cut(s) 243, 1049
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 377
BsaHI GRCGYC 2 cut(s) 43, 261
BsaI GGTCTC 1 cut(s) 566
BsaWI WCCGGW 3 cut(s) 175, 680, 691
BsaXI ACNNNNNCTCC 4 cut(s) 338, 368, 838, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 322, 424
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 4 cut(s) 581, 596, 819, 1145
Bse8I GATNNNNATC 1 cut(s) 377
BseAI TCCGGA 1 cut(s) 175
BseGI GGATG 4 cut(s) 677, 794, 967, 1057
BseJI GATNNNNATC 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 248, 322, 424
BseMI GCAATG 4 cut(s) 581, 596, 819, 1145
BseMII CTCAG 2 cut(s) 52, 616
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 5 cut(s) 70, 142, 145, 440, 1079
BseX3I CGGCCG 1 cut(s) 391
BseXI GCAGC 2 cut(s) 343, 573
BseYI CCCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 2 cut(s) 394, 647
BshFI GGCC 4 cut(s) 252, 272, 326, 393
BshNI GGYRCC 1 cut(s) 898
BsiEI CGRYCG 2 cut(s) 394, 647
BsiSI CCGG 6 cut(s) 176, 243, 438, 681, 692, 1048
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 3 cut(s) 248, 322, 424
BsmAI GTCTC 3 cut(s) 566, 1008, 1079
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 4 cut(s) 252, 272, 326, 393
Bso31I GGTCTC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 4 cut(s) 289, 372, 714, 1075
BspANI GGCC 4 cut(s) 252, 272, 326, 393
BspCNI CTCAG 2 cut(s) 51, 615
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 227, 291, 900
BspPI GGATC 2 cut(s) 284, 297
BspQI GCTCTTC 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 898
BspTNI GGTCTC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 949
BsrDI GCAATG 4 cut(s) 581, 596, 819, 1145
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 207
BssMI GATC 4 cut(s) 289, 372, 714, 1075
BssNI GRCGYC 2 cut(s) 43, 261
Bst4CI ACNGT 2 cut(s) 557, 625
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 2 cut(s) 43, 261
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 38, 602
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 4 cut(s) 677, 794, 967, 1057
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 2 cut(s) 23, 336
BstKTI GATC 4 cut(s) 292, 375, 717, 1078
BstMAI GTCTC 3 cut(s) 566, 1008, 1079
BstMBI GATC 4 cut(s) 289, 372, 714, 1075
BstMCI CGRYCG 2 cut(s) 394, 647
BstMWI GCNNNNNNNGC 3 cut(s) 29, 278, 402
BstSCI CCNGG 2 cut(s) 241, 1047
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 343, 573
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 289
BstZI CGGCCG 1 cut(s) 391
BsuI GTATCC 1 cut(s) 688
BsuRI GGCC 4 cut(s) 252, 272, 326, 393
BtsCI GGATG 4 cut(s) 677, 794, 967, 1057
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 23, 336
Cfr13I GGNCC 4 cut(s) 226, 251, 271, 325
CseI GACGC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 529, 912
CviAII CATG 4 cut(s) 222, 370, 632, 1111
CviQI GTAC 2 cut(s) 529, 912
DdeI CTNAG 2 cut(s) 38, 602
DpnI GATC 4 cut(s) 291, 374, 716, 1077
DpnII GATC 4 cut(s) 289, 372, 714, 1075
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 391
EagI CGGCCG 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 512
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 1 cut(s) 148
EclXI CGGCCG 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 226
Eco52I CGGCCG 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 544
EcoT22I ATGCAT 2 cut(s) 583, 1147
FaeI CATG 4 cut(s) 225, 373, 635, 1114
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 1 cut(s) 443
FatI CATG 4 cut(s) 221, 369, 631, 1110
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 2 cut(s) 372, 714
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 5 cut(s) 162, 332, 394, 397, 587
FokI GGATG 4 cut(s) 664, 801, 974, 1064
Fsp4HI GCNGC 5 cut(s) 162, 332, 394, 397, 587
FspBI CTAG 2 cut(s) 903, 1082
GlaI GCGC 2 cut(s) 22, 335
GluI GCNGC 5 cut(s) 162, 332, 394, 397, 587
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 2 cut(s) 224, 965
HaeIII GGCC 4 cut(s) 252, 272, 326, 393
HapII CCGG 6 cut(s) 176, 243, 438, 681, 692, 1048
HgaI GACGC 1 cut(s) 51
HhaI GCGC 2 cut(s) 23, 336
Hin1I GRCGYC 2 cut(s) 43, 261
Hin1II CATG 4 cut(s) 225, 373, 635, 1114
Hin6I GCGC 2 cut(s) 21, 334
HinP1I GCGC 2 cut(s) 21, 334
HincII GTYRAC 2 cut(s) 265, 1017
HindII GTYRAC 2 cut(s) 265, 1017
HinfI GANTC 3 cut(s) 179, 246, 483
HpaI GTTAAC 1 cut(s) 1017
HpaII CCGG 6 cut(s) 176, 243, 438, 681, 692, 1048
HphI GGTGA 6 cut(s) 19, 109, 128, 358, 661, 1073
Hpy166II GTNNAC 4 cut(s) 117, 265, 529, 1017
Hpy188I TCNGA 5 cut(s) 41, 188, 289, 317, 550
Hpy188III TCNNGA 8 cut(s) 176, 229, 293, 305, 604, 770, 944, 1007
Hpy8I GTNNAC 4 cut(s) 117, 265, 529, 1017
Hpy99I CGWCG 5 cut(s) 13, 21, 263, 266, 269
HpyAV CCTTC 5 cut(s) 114, 667, 835, 883, 1031
HpyCH4III ACNGT 2 cut(s) 557, 625
HpyCH4IV ACGT 4 cut(s) 11, 16, 90, 261
HpyCH4V TGCA 5 cut(s) 4, 581, 933, 1145, 1150
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 278, 402
HpyF3I CTNAG 2 cut(s) 38, 602
HpySE526I ACGT 4 cut(s) 11, 16, 90, 261
Hsp92I GRCGYC 2 cut(s) 43, 261
Hsp92II CATG 4 cut(s) 225, 373, 635, 1114
HspAI GCGC 2 cut(s) 21, 334
Kpn2I TCCGGA 1 cut(s) 175
Ksp22I TGATCA 2 cut(s) 372, 714
KspAI GTTAAC 1 cut(s) 1017
Kzo9I GATC 4 cut(s) 289, 372, 714, 1075
LguI GCTCTTC 1 cut(s) 512
LmnI GCTCC 3 cut(s) 440, 946, 1095
Lsp1109I GCAGC 2 cut(s) 343, 573
LweI GCATC 3 cut(s) 492, 686, 952
MaeI CTAG 2 cut(s) 903, 1082
MaeII ACGT 4 cut(s) 11, 16, 90, 261
MaeIII GTNAC 3 cut(s) 12, 126, 815
MalI GATC 4 cut(s) 291, 374, 716, 1077
MbiI CCGCTC 1 cut(s) 949
MboI GATC 4 cut(s) 289, 372, 714, 1075
MboII GAAGA 2 cut(s) 499, 507
MflI RGATCY 1 cut(s) 289
MluCI AATT 5 cut(s) 212, 544, 592, 927, 994
MlyI GAGTC 1 cut(s) 173
Mph1103I ATGCAT 2 cut(s) 583, 1147
MroI TCCGGA 1 cut(s) 175
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 4 cut(s) 591, 612, 1016, 1139
MspI CCGG 6 cut(s) 176, 243, 438, 681, 692, 1048
MspR9I CCNGG 2 cut(s) 243, 1049
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 29, 278, 402
NciI CCSGG 2 cut(s) 243, 1049
NdeII GATC 4 cut(s) 289, 372, 714, 1075
NlaIII CATG 4 cut(s) 225, 373, 635, 1114
NlaIV GGNNCC 3 cut(s) 227, 291, 900
NmuCI GTSAC 1 cut(s) 126
NsiI ATGCAT 2 cut(s) 583, 1147
NspV TTCGAA 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 512
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 653
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 246, 483
PkrI GCNGC 5 cut(s) 163, 333, 395, 398, 588
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 227, 291, 900
PspPI GGNCC 4 cut(s) 226, 251, 271, 325
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 530, 913
RsaNI GTAC 2 cut(s) 529, 912
SalI GTCGAC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 512
SaqAI TTAA 4 cut(s) 591, 612, 1016, 1139
SatI GCNGC 5 cut(s) 162, 332, 394, 397, 587
Sau3AI GATC 4 cut(s) 289, 372, 714, 1075
Sau96I GGNCC 4 cut(s) 226, 251, 271, 325
ScaI AGTACT 1 cut(s) 913
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 243, 1049
SfaNI GCATC 3 cut(s) 492, 686, 952
SfuI TTCGAA 1 cut(s) 216
SgrDI CGTCGACG 1 cut(s) 263
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 5 cut(s) 212, 544, 592, 927, 994
SspMI CTAG 2 cut(s) 903, 1082
StyD4I CCNGG 2 cut(s) 241, 1047
TaaI ACNGT 2 cut(s) 557, 625
TaiI ACGT 4 cut(s) 14, 19, 93, 264
TaqI TCGA 5 cut(s) 216, 264, 306, 481, 662
TasI AATT 5 cut(s) 212, 544, 592, 927, 994
TatI WGTACW 2 cut(s) 528, 911
TauI GCSGC 3 cut(s) 164, 396, 399
TfiI GAWTC 2 cut(s) 246, 483
Tru1I TTAA 4 cut(s) 591, 612, 1016, 1139
Tru9I TTAA 4 cut(s) 591, 612, 1016, 1139
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 2 cut(s) 331, 586
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 5 cut(s) 96, 585, 686, 1127, 1131
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 2 cut(s) 903, 1082
ZraI GACGTC 1 cut(s) 262
ZrmI AGTACT 1 cut(s) 913
Zsp2I ATGCAT 2 cut(s) 583, 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.