RLG00000034408

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013547
Physical Location & Seq
Forward (+)
42261391 .. 42264050
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034408

Sequence Viewer

Length: 1176 bp
ATGCCGGCGACGTTACGTCGCGTTCTCACCGCTACTCTCAGACGCCCCAATATCCTCTCTCCTCAACGCCCACCTCTCTCCTCCCGCCACGTAATCCCTGACCCTTCATTTCTGGTCACCCTCCCGTCACTCTATCACCGCCTCCTATCCTCCTCCTCCTCCTCCGCCGCCGAAAACCCTCCGGACTCATTCCGAACCCGAACCCCACTGGAGAAGCAATTCGAAACATGGGTCCAGAAACTCAAACCCGGATTTGGCCCACCCGAAGTTGACGAGGCCCTGAAAGCCCAATCGGATCCCGACCTCGCTCTCGACATTTTCCGATGGACGGCCCAGCAACGCAACTACAAGCACAGCCACTCCACCTACCTCACCATGATCAAAATCCTAATCAACGGCCGCCGCTACCGCCACGCCGAAACCCTACTTGAGGAGGTGGTCGCCGGAGCTTGTGAGATAAGTGTCCCACTCTATAACTCCATTATTCGATTCTGTTGTGGAAGAAAGATGCTCTTCAATCGTGCTTTTGATGTGTACAAGAAAATGTTGAATTCGGAGAACTGTAAGCCCACATTGGAGACCTATGCATTGCTGCTTAATTCATTGCTCAGGAGGTTTAATAATATCACTGTTTGCCATGTGTATTTGCGGTCTGTAAGGTCGTTGTCAAAGCAAATGAAGGCATCCGGTGTGATACCGGATACTTTTGTGTTGAATATGATCATCAAGGCTTATTCCAAGTGTTTGGAAGTTGATGAGGCACTTCAGGTTTTTCGGGAAATGGGGTTGTATGGATGTGAACCGAATGGTTATACTTATGGTTACATTGCCAAAGGGTTGTGTGAGAAGGGGAGGGTAGGTCAGGGTTTAGGGTTTTACAAGGAAATGAGAGGGAAGGGTTTGGTGCCTAGCAGTAGTACTTATATGGTTGTAATTTGCAGTCTTGCTCTGGAGCGGAGATATGAGGATGCGAGTAATGTCGTGTTTGATATGTTGAGTAATTCTATGTCTCCTGATTTGTTAACTTACAAAACTTTACTGGAAGGATTGTGCCGGGATGGAAAAGGTGAGGAGGCATTTGAGCTACTAGAGACTTTTAGGAGCAGGGATAGAGCCATGAATGAAAAGACATACAAGACATTGTTAAATGCATTGCATTTTGTAAATAGGGAGTAG

Protein Analysis

392

Amino Acids

44.56

Weight (kDa)

9.22

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 155 - 203 1.4e-06 PPR repeat family
PPR_2 PF13041 233 - 281 8.9e-13 PPR repeat family
PPR_long PF17177 289 - 384 5.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 303 - 352 6.7e-08 PPR repeat family
PPR_1 PF12854 336 - 364 2.1e-08 PPR repeat
PPR_2 PF13041 338 - 385 6.3e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25210
fragaria_vesca FvH4_3g25580
malus_domestica MD05G1166500.v1.1 MD10G1156500.v1.1
prunus_persica Prupe.8G194300_v2.0.a1
pyrus_communis pycom05g15510 pycom10g13470
rosa_chinensis RchiOBHm_Chr5g0046411
rosa_laevigata RLG00000034408
rosa_multiflora Rmu_sc0003878.1_g000050
rosa_roxburghii Rroxscaffold_1G00034990 Rroxscaffold_7G00197530
rosa_rugosa Rorug05G0227800
rosa_samantha Rh5AG309000 Rh5BG317200 Rh5CG343100 Rh5DG327400
rosa_wichuraiana Rw0G021510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 904
AccBSI CCGCTC 1 cut(s) 955
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 181
AclWI GGATC 2 cut(s) 290, 303
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 749
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 2 cut(s) 536, 919
AfiI CCNNNNNNNGG 3 cut(s) 254, 328, 430
AgsI TTSAA 3 cut(s) 517, 550, 715
AhdI GACNNNNNGTC 1 cut(s) 15
AluBI AGCT 2 cut(s) 449, 1084
AluI AGCT 2 cut(s) 449, 1084
Alw26I GTCTC 3 cut(s) 572, 1014, 1085
AlwI GGATC 2 cut(s) 290, 303
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 4 cut(s) 256, 276, 330, 397
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 1 cut(s) 550
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 4 cut(s) 232, 257, 277, 331
AsuC2I CCSGG 2 cut(s) 249, 1055
AsuHPI GGTGA 5 cut(s) 19, 109, 128, 364, 1079
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 904
BbvI GCAGC 1 cut(s) 579
BccI CCATC 2 cut(s) 318, 1052
BceAI ACGGC 2 cut(s) 345, 412
BciVI GTATCC 1 cut(s) 694
BclI TGATCA 2 cut(s) 378, 720
BcnI CCSGG 2 cut(s) 249, 1055
BcoDI GTCTC 3 cut(s) 572, 1014, 1085
BfaI CTAG 2 cut(s) 909, 1088
BfuI GTATCC 1 cut(s) 694
BisI GCNGC 4 cut(s) 168, 400, 403, 593
BlsI GCNGC 4 cut(s) 169, 401, 404, 594
BmcAI AGTACT 1 cut(s) 919
Bme1390I CCNGG 2 cut(s) 249, 1055
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 15
BmgT120I GGNCC 4 cut(s) 232, 257, 277, 331
BmiI GGNNCC 3 cut(s) 233, 297, 906
BmrFI CCNGG 2 cut(s) 249, 1055
BmsI GCATC 3 cut(s) 498, 692, 958
BpmI CTGGAG 2 cut(s) 230, 971
Bpu10I CCTNAGC 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 249, 1055
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 572
BsaWI WCCGGW 3 cut(s) 181, 686, 697
BsaXI ACNNNNNCTCC 4 cut(s) 344, 374, 844, 874
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 328, 430
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 213, 1044
Bse3DI GCAATG 4 cut(s) 587, 602, 825, 1151
Bse8I GATNNNNATC 1 cut(s) 383
BseAI TCCGGA 1 cut(s) 181
BseGI GGATG 4 cut(s) 683, 800, 973, 1063
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 3 cut(s) 254, 328, 430
BseMI GCAATG 4 cut(s) 587, 602, 825, 1151
BseMII CTCAG 2 cut(s) 52, 622
BseNI ACTGG 2 cut(s) 213, 1044
BseRI GAGGAG 8 cut(s) 51, 70, 142, 145, 148, 151, 446, 1085
BseX3I CGGCCG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 579
BseYI CCCAGC 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 4 cut(s) 258, 278, 332, 399
BshNI GGYRCC 1 cut(s) 904
BsiEI CGRYCG 1 cut(s) 400
BsiSI CCGG 7 cut(s) 5, 182, 249, 444, 687, 698, 1054
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 3 cut(s) 254, 328, 430
BsmAI GTCTC 3 cut(s) 572, 1014, 1085
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 4 cut(s) 258, 278, 332, 399
Bso31I GGTCTC 1 cut(s) 572
Bsp119I TTCGAA 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 3 cut(s) 295, 378, 720
BspANI GGCC 4 cut(s) 258, 278, 332, 399
BspCNI CTCAG 2 cut(s) 51, 621
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 233, 297, 906
BspPI GGATC 2 cut(s) 290, 303
BspQI GCTCTTC 1 cut(s) 518
BspT104I TTCGAA 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 904
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 955
BsrDI GCAATG 4 cut(s) 587, 602, 825, 1151
BsrFI RCCGGY 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 2 cut(s) 213, 1044
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 3 cut(s) 295, 378, 720
BssNI GRCGYC 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 563, 631
Bst6I CTCTTC 1 cut(s) 518
BstACI GRCGYC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 38, 608
BstEII GGTNACC 1 cut(s) 115
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 4 cut(s) 683, 800, 973, 1063
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 3 cut(s) 298, 381, 723
BstMAI GTCTC 3 cut(s) 572, 1014, 1085
BstMBI GATC 3 cut(s) 295, 378, 720
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 284, 408
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 247, 1053
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 1 cut(s) 295
BstZI CGGCCG 1 cut(s) 397
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 4 cut(s) 258, 278, 332, 399
BtsCI GGATG 4 cut(s) 683, 800, 973, 1063
BtsIMutI CAGTG 2 cut(s) 206, 627
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 4 cut(s) 232, 257, 277, 331
CseI GACGC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 535, 918
CviAII CATG 4 cut(s) 228, 376, 638, 1117
CviQI GTAC 2 cut(s) 535, 918
DdeI CTNAG 2 cut(s) 38, 608
DpnI GATC 3 cut(s) 297, 380, 722
DpnII GATC 3 cut(s) 295, 378, 720
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 397
EagI CGGCCG 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 518
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 518
EciI GGCGGA 1 cut(s) 154
EclXI CGGCCG 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 232
Eco52I CGGCCG 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 749
Eco91I GGTNACC 1 cut(s) 115
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 277
EcoO65I GGTNACC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 550
EcoT22I ATGCAT 2 cut(s) 589, 1153
FaeI CATG 4 cut(s) 231, 379, 641, 1120
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 1 cut(s) 449
FatI CATG 4 cut(s) 227, 375, 637, 1116
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 2 cut(s) 378, 720
Fnu4HI GCNGC 4 cut(s) 168, 400, 403, 593
FokI GGATG 4 cut(s) 670, 807, 980, 1070
Fsp4HI GCNGC 4 cut(s) 168, 400, 403, 593
FspBI CTAG 2 cut(s) 909, 1088
GluI GCNGC 4 cut(s) 168, 400, 403, 593
GsaI CCCAGC 1 cut(s) 337
GsuI CTGGAG 2 cut(s) 230, 971
HaeIII GGCC 4 cut(s) 258, 278, 332, 399
HapII CCGG 7 cut(s) 5, 182, 249, 444, 687, 698, 1054
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 4 cut(s) 231, 379, 641, 1120
HincII GTYRAC 2 cut(s) 271, 1023
HindII GTYRAC 2 cut(s) 271, 1023
HinfI GANTC 2 cut(s) 185, 489
HpaI GTTAAC 1 cut(s) 1023
HpaII CCGG 7 cut(s) 5, 182, 249, 444, 687, 698, 1054
HphI GGTGA 5 cut(s) 19, 109, 128, 364, 1079
Hpy166II GTNNAC 4 cut(s) 271, 535, 800, 1023
Hpy188I TCNGA 5 cut(s) 41, 194, 295, 323, 556
Hpy188III TCNNGA 8 cut(s) 182, 235, 299, 311, 610, 776, 950, 1013
Hpy8I GTNNAC 4 cut(s) 271, 535, 800, 1023
Hpy99I CGWCG 2 cut(s) 13, 21
HpyAV CCTTC 5 cut(s) 114, 673, 841, 889, 1037
HpyCH4III ACNGT 2 cut(s) 563, 631
HpyCH4IV ACGT 3 cut(s) 11, 16, 90
HpyCH4V TGCA 4 cut(s) 587, 939, 1151, 1156
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 408
HpyF3I CTNAG 2 cut(s) 38, 608
HpySE526I ACGT 3 cut(s) 11, 16, 90
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 4 cut(s) 231, 379, 641, 1120
Kpn2I TCCGGA 1 cut(s) 181
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 2 cut(s) 378, 720
KspAI GTTAAC 1 cut(s) 1023
Kzo9I GATC 3 cut(s) 295, 378, 720
LguI GCTCTTC 1 cut(s) 518
LmnI GCTCC 3 cut(s) 446, 952, 1101
Lsp1109I GCAGC 1 cut(s) 579
LweI GCATC 3 cut(s) 498, 692, 958
MaeI CTAG 2 cut(s) 909, 1088
MaeII ACGT 3 cut(s) 11, 16, 90
MaeIII GTNAC 4 cut(s) 12, 115, 126, 821
MalI GATC 3 cut(s) 297, 380, 722
MbiI CCGCTC 1 cut(s) 955
MboI GATC 3 cut(s) 295, 378, 720
MboII GAAGA 2 cut(s) 505, 513
MflI RGATCY 1 cut(s) 295
MluCI AATT 5 cut(s) 218, 550, 598, 933, 1000
MlyI GAGTC 1 cut(s) 179
Mph1103I ATGCAT 2 cut(s) 589, 1153
MroI TCCGGA 1 cut(s) 181
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 4 cut(s) 597, 618, 1022, 1145
MspI CCGG 7 cut(s) 5, 182, 249, 444, 687, 698, 1054
MspR9I CCNGG 2 cut(s) 249, 1055
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 284, 408
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 2 cut(s) 249, 1055
NdeII GATC 3 cut(s) 295, 378, 720
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 231, 379, 641, 1120
NlaIV GGNNCC 3 cut(s) 233, 297, 906
NmuCI GTSAC 2 cut(s) 115, 126
NsiI ATGCAT 2 cut(s) 589, 1153
NspV TTCGAA 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 518
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 489
PkrI GCNGC 4 cut(s) 169, 401, 404, 594
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 91
PspEI GGTNACC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 333
PspN4I GGNNCC 3 cut(s) 233, 297, 906
PspPI GGNCC 4 cut(s) 232, 257, 277, 331
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 2 cut(s) 536, 919
RsaNI GTAC 2 cut(s) 535, 918
SapI GCTCTTC 1 cut(s) 518
SaqAI TTAA 4 cut(s) 597, 618, 1022, 1145
SatI GCNGC 4 cut(s) 168, 400, 403, 593
Sau3AI GATC 3 cut(s) 295, 378, 720
Sau96I GGNCC 4 cut(s) 232, 257, 277, 331
ScaI AGTACT 1 cut(s) 919
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 249, 1055
SfaNI GCATC 3 cut(s) 498, 692, 958
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 5 cut(s) 218, 550, 598, 933, 1000
SspMI CTAG 2 cut(s) 909, 1088
StyD4I CCNGG 2 cut(s) 247, 1053
TaaI ACNGT 2 cut(s) 563, 631
TaiI ACGT 3 cut(s) 14, 19, 93
TaqI TCGA 3 cut(s) 222, 312, 487
TasI AATT 5 cut(s) 218, 550, 598, 933, 1000
TatI WGTACW 2 cut(s) 534, 917
TauI GCSGC 3 cut(s) 170, 402, 405
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 4 cut(s) 597, 618, 1022, 1145
Tru9I TTAA 4 cut(s) 597, 618, 1022, 1145
TscAI CASTG 2 cut(s) 213, 634
TseFI GTSAC 2 cut(s) 115, 126
TseI GCWGC 1 cut(s) 592
Tsp45I GTSAC 2 cut(s) 115, 126
TspDTI ATGAA 5 cut(s) 96, 591, 692, 1133, 1137
TspRI CASTG 2 cut(s) 213, 634
VpaK11BI GGWCC 1 cut(s) 232
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 2 cut(s) 909, 1088
ZrmI AGTACT 1 cut(s) 919
Zsp2I ATGCAT 2 cut(s) 589, 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.