Prupe.8G215600_v2.0.a1

Vacuolar protein sorting-associated protein 62

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
19785090 .. 19789316
4227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G215600.1

Sequence Viewer

Length: 1704 bp
ATGTTCGGGTGCAAGTGCTTCTATTGGAAGAAACTCTCCGATTTATTCCCACCAGAGCCTGAACCCTTCTCTCTGCCTGATCCCATTCCTCAGTGGCCTCCAGGTGAAGGTTTTGCTTCTGGAAAAGTAAGTCTTGGAGAAATAGAGGTTTTTAAAATCAACAGATTTGAGTTCATCTGGACCTGCTCTCTGCCAGAGGACAAGAAAAAATGTGTTACATTTTATAAACCAGCGGGAATACCTGATGGATTCCATAGCATTGGCCACTATTGCCAATCTAATGATAAGCCTTTACACGGTTTTGTTCTTGTGGTTAGAGAGGCCGATATGCCAGAAACAGCCGATGTTTTGGAGCGTGTCAAGTCCCCGGCTCTCAGCAAACCACTTGATTACACATTAGTATGGAGTCCTGACGATGGAAATGAGGAAATTTATGGTGCATGTGGCTACTTTTGGCTACCTCAGCCACCTGAAGGTTACAAAGCAATGGGATTTTTAGTGACTAACAAGCCTGACAAACCTGGGCTGGATGAAGTGAGGTGTGTTCGAGCTGATTTAACTGACAGATGTGAAACTTACACACTCATTCTTAATGCCATTACAACATCGCTCAACCTTCCTTTTCAAGTTTGGACTACGAGACCACATCATCGGGGAATGATGGGGAAGGGGGTTTCTGTAGGTACATTTTTCTGCAGTAACGACTTGGGCATTGTAAAGGATCTACACATTAGATGCTTGAAGAATCTGAATCCTAAGCTATCTGGAATGCCAAATCTTGATCAAATTCATTCACTTATCAATCATTATGGACCCACCGTTTTCTTTCATCCAGAAGAGGTCTACTTGCCATCTTCTGTTTCATGGTTTTTCAAAAGTGGAGCATTATTGTACAAATCTGGCACATCTGTTGGTGAGGCTATTGATGGTAGCGGCTCAAACTTGCCAAGTGGGGGGGCAAATGATGGCCAGTTTTGGATTGACTTGCCGAATGATGATCGAAGAGAAATTATAACACATGGAAACTTGGAAAGTGCAAAACTATATGTTCATGTGAAACCAGCTCTTGGTGGGATTTTTTCTGACATTGCAATGTGGGTGTTTTGCCCCTTCAATGGACCAGCCACTATCAAAGTTGGGCCTCTCGACATCCCTCTTAGCAAGATCGGACAGCATGTGGGTGACTGGGAGCATTTCACACTCCGCATCTGCAACTTTTCAGGAGAGCTTTGGAGTATATACTTCTCACAGCACAGCGGTGGCAAATGGGTAGATGCATATGATTTGGAGTACATAGAAGGGAATAGAGCTATTGTCTACTCATCGAAAAGTGGACATGCGAGCTACCCTCATCCCGGGACTTACCTTCAGGGGTCGGACAAGCTTGGAGTTGGAATAAGGAACGATGCTGCTTGTAGTAATCTATCTGTGGATTCGAGTGTCCATTACGAACTTGTTTCAGCTGAGTATCTTGGAGACGGGGTAGTTACTGAGCCATGTTGGCTGAATTTTATGAGAGAATGGGGTCCAACAATTGTGTACAATTCAAGAACTGAGCTTGATAAAGTTATCAGTCTTTTGCCTGTGATGTTTAAATATTCAGTGGAGAACATTTTCAGTAAGTTTCCAGTTGAGCTTTATGGGGAGGAAGGTCCCACTGGACCAAAGGAGAAGAACAATTGGGTGGGAGATGAAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

568

Amino Acids

63.29

Weight (kDa)

5.42

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 225, 1013
Acc36I ACCTGC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccI GTMKAC 2 cut(s) 843, 1317
AciI CCGC 4 cut(s) 233, 933, 1204, 1257
AclWI GGATC 2 cut(s) 74, 729
AcoI YGGCCR 2 cut(s) 262, 967
AcsI RAATTY 3 cut(s) 429, 786, 1507
AcuI CTGAAG 2 cut(s) 492, 1352
AfaI GTAC 4 cut(s) 685, 893, 1292, 1541
AfiI CCNNNNNNNGG 8 cut(s) 107, 296, 416, 473, 953, 1067, 1115, 1355
AgsI TTSAA 5 cut(s) 626, 742, 874, 1114, 1548
AjnI CCWGG 2 cut(s) 100, 520
AleI CACNNNNGTG 1 cut(s) 1257
Alw26I GTCTC 2 cut(s) 634, 1470
AlwI GGATC 2 cut(s) 74, 729
AlwNI CAGNNNCTG 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 1355
AoxI GGCC 5 cut(s) 95, 262, 321, 967, 1139
ApeKI GCWGC 1 cut(s) 1409
ApoI RAATTY 3 cut(s) 429, 786, 1507
Asp700I GAANNNNTTC 1 cut(s) 1613
AspS9I GGNCC 7 cut(s) 180, 812, 1118, 1139, 1526, 1652, 1661
AsuC2I CCSGG 3 cut(s) 368, 1356, 1357
AsuHPI GGTGA 3 cut(s) 116, 926, 1193
AvaI CYCGRG 1 cut(s) 1355
AvaII GGWCC 6 cut(s) 180, 812, 1118, 1526, 1652, 1661
BalI TGGCCA 2 cut(s) 264, 969
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 1396
BccI CCATC 6 cut(s) 239, 410, 655, 859, 920, 959
BciT130I CCWGG 2 cut(s) 102, 522
BclI TGATCA 1 cut(s) 781
BcnI CCSGG 3 cut(s) 368, 1356, 1357
BcoDI GTCTC 2 cut(s) 634, 1470
BfmI CTRYAG 2 cut(s) 678, 694
BfuAI ACCTGC 1 cut(s) 191
BglI GCCNNNNNGGC 1 cut(s) 1501
BisI GCNGC 2 cut(s) 934, 1410
BlsI GCNGC 2 cut(s) 935, 1411
Bme1390I CCNGG 5 cut(s) 102, 368, 522, 1356, 1357
Bme18I GGWCC 6 cut(s) 180, 812, 1118, 1526, 1652, 1661
BmeT110I CYCGRG 1 cut(s) 1355
BmgT120I GGNCC 7 cut(s) 180, 812, 1118, 1139, 1526, 1652, 1661
BmiI GGNNCC 3 cut(s) 814, 1527, 1654
BmrFI CCNGG 5 cut(s) 102, 368, 522, 1356, 1357
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 4 cut(s) 725, 1215, 1264, 1396
BmuI ACTGGG 1 cut(s) 1195
BplI GAGNNNNNCTC 2 cut(s) 1333, 1365
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 2 cut(s) 462, 756
BpuMI CCSGG 3 cut(s) 368, 1356, 1357
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 3 cut(s) 366, 521, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 1467, 1497
Bsc4I CCNNNNNNNGG 8 cut(s) 107, 296, 416, 473, 953, 1067, 1115, 1355
Bse1I ACTGG 4 cut(s) 970, 1190, 1628, 1663
Bse3DI GCAATG 3 cut(s) 492, 1086, 1098
BseBI CCWGG 2 cut(s) 102, 522
BseDI CCNNGG 3 cut(s) 366, 521, 1355
BseGI GGATG 4 cut(s) 535, 829, 1149, 1351
BseLI CCNNNNNNNGG 8 cut(s) 107, 296, 416, 473, 953, 1067, 1115, 1355
BseMI GCAATG 3 cut(s) 492, 1086, 1098
BseMII CTCAG 6 cut(s) 104, 388, 476, 1455, 1482, 1545
BseNI ACTGG 4 cut(s) 970, 1190, 1628, 1663
BseXI GCAGC 1 cut(s) 1396
BshFI GGCC 5 cut(s) 97, 264, 323, 969, 1141
BsiHKCI CYCGRG 1 cut(s) 1355
BsiSI CCGG 2 cut(s) 368, 1356
BslFI GGGAC 3 cut(s) 349, 1372, 1638
BslI CCNNNNNNNGG 8 cut(s) 107, 296, 416, 473, 953, 1067, 1115, 1355
BsmAI GTCTC 2 cut(s) 634, 1470
BsmBI CGTCTC 1 cut(s) 1470
BsmFI GGGAC 3 cut(s) 349, 1372, 1638
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 5 cut(s) 97, 264, 323, 969, 1141
Bso31I GGTCTC 1 cut(s) 634
BsoBI CYCGRG 1 cut(s) 1355
Bsp1407I TGTACA 2 cut(s) 891, 1539
Bsp143I GATC 5 cut(s) 79, 721, 781, 997, 1164
BspACI CCGC 4 cut(s) 233, 933, 1204, 1257
BspANI GGCC 5 cut(s) 97, 264, 323, 969, 1141
BspCNI CTCAG 6 cut(s) 103, 387, 475, 1456, 1483, 1546
BspLI GGNNCC 3 cut(s) 814, 1527, 1654
BspMAI CTGCAG 1 cut(s) 698
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 74, 729
BspTNI GGTCTC 1 cut(s) 634
BsrDI GCAATG 3 cut(s) 492, 1086, 1098
BsrGI TGTACA 2 cut(s) 891, 1539
BsrI ACTGG 4 cut(s) 970, 1190, 1628, 1663
BssECI CCNNGG 3 cut(s) 366, 521, 1355
BssMI GATC 5 cut(s) 79, 721, 781, 997, 1164
Bst2UI CCWGG 2 cut(s) 102, 522
Bst4CI ACNGT 2 cut(s) 299, 820
Bst6I CTCTTC 2 cut(s) 831, 997
BstAUI TGTACA 2 cut(s) 891, 1539
BstC8I GCNNGC 1 cut(s) 1342
BstDEI CTNAG 8 cut(s) 90, 374, 462, 756, 1157, 1464, 1491, 1554
BstF5I GGATG 4 cut(s) 535, 829, 1149, 1351
BstKTI GATC 5 cut(s) 82, 724, 784, 1000, 1167
BstMAI GTCTC 2 cut(s) 634, 1470
BstMBI GATC 5 cut(s) 79, 721, 781, 997, 1164
BstMWI GCNNNNNNNGC 3 cut(s) 270, 463, 1501
BstNI CCWGG 2 cut(s) 102, 522
BstNSI RCATGY 3 cut(s) 444, 1178, 1340
BstSCI CCNGG 5 cut(s) 100, 366, 520, 1354, 1355
BstSFI CTRYAG 2 cut(s) 678, 694
BstV1I GCAGC 1 cut(s) 1396
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 5 cut(s) 97, 264, 323, 969, 1141
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 4 cut(s) 535, 829, 1149, 1351
BtsIMutI CAGTG 3 cut(s) 98, 1608, 1656
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 1342
CaiI CAGNNNCTG 1 cut(s) 59
Cfr13I GGNCC 7 cut(s) 180, 812, 1118, 1139, 1526, 1652, 1661
Cfr9I CCCGGG 1 cut(s) 1355
Csp6I GTAC 4 cut(s) 684, 892, 1291, 1540
CviAII CATG 7 cut(s) 441, 864, 1019, 1052, 1175, 1337, 1497
CviQI GTAC 4 cut(s) 684, 892, 1291, 1540
DdeI CTNAG 8 cut(s) 90, 374, 462, 756, 1157, 1464, 1491, 1554
DpnI GATC 5 cut(s) 81, 723, 783, 999, 1166
DpnII GATC 5 cut(s) 79, 721, 781, 997, 1164
DraI TTTAAA 2 cut(s) 154, 1594
EaeI YGGCCR 2 cut(s) 262, 967
Eam1104I CTCTTC 2 cut(s) 831, 997
EarI CTCTTC 2 cut(s) 831, 997
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 6 cut(s) 180, 812, 1118, 1526, 1652, 1661
Eco57I CTGAAG 2 cut(s) 492, 1352
Eco88I CYCGRG 1 cut(s) 1355
EcoO109I RGGNCCY 1 cut(s) 1652
EcoRII CCWGG 2 cut(s) 100, 520
EcoT22I ATGCAT 1 cut(s) 1279
Esp3I CGTCTC 1 cut(s) 1470
FaeI CATG 7 cut(s) 444, 867, 1022, 1055, 1178, 1340, 1500
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 3 cut(s) 349, 1372, 1638
FatI CATG 7 cut(s) 440, 863, 1018, 1051, 1174, 1336, 1496
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 1279
FbaI TGATCA 1 cut(s) 781
FblI GTMKAC 2 cut(s) 843, 1317
Fnu4HI GCNGC 2 cut(s) 934, 1410
FokI GGATG 4 cut(s) 542, 816, 1136, 1338
Fsp4HI GCNGC 2 cut(s) 934, 1410
GluI GCNGC 2 cut(s) 934, 1410
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 5 cut(s) 97, 264, 323, 969, 1141
HapII CCGG 2 cut(s) 368, 1356
Hin1II CATG 7 cut(s) 444, 867, 1022, 1055, 1178, 1340, 1500
HindIII AAGCTT 1 cut(s) 1382
HinfI GANTC 5 cut(s) 249, 406, 745, 751, 1433
HpaII CCGG 2 cut(s) 368, 1356
HphI GGTGA 3 cut(s) 116, 926, 1193
Hpy166II GTNNAC 4 cut(s) 844, 1318, 1334, 1540
Hpy188I TCNGA 5 cut(s) 40, 750, 1084, 1169, 1378
Hpy188III TCNNGA 9 cut(s) 120, 178, 410, 765, 779, 833, 1145, 1221, 1548
Hpy8I GTNNAC 4 cut(s) 844, 1318, 1334, 1540
HpyAV CCTTC 9 cut(s) 76, 101, 467, 626, 661, 1120, 1292, 1376, 1643
HpyCH4III ACNGT 2 cut(s) 299, 820
HpyCH4V TGCA 7 cut(s) 12, 440, 696, 1037, 1091, 1212, 1277
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 463, 1501
HpyF3I CTNAG 8 cut(s) 90, 374, 462, 756, 1157, 1464, 1491, 1554
Hsp92II CATG 7 cut(s) 444, 867, 1022, 1055, 1178, 1340, 1500
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 5 cut(s) 79, 721, 781, 997, 1164
LmnI GCTCC 3 cut(s) 352, 881, 1189
Lsp1109I GCAGC 1 cut(s) 1396
LweI GCATC 4 cut(s) 725, 1215, 1264, 1396
MaeIII GTNAC 6 cut(s) 214, 476, 499, 698, 1181, 1486
MalI GATC 5 cut(s) 81, 723, 783, 999, 1166
MboI GATC 5 cut(s) 79, 721, 781, 997, 1164
MboII GAAGA 6 cut(s) 40, 754, 846, 848, 1014, 1684
MfeI CAATTG 2 cut(s) 1533, 1678
MflI RGATCY 1 cut(s) 721
MlsI TGGCCA 2 cut(s) 264, 969
MluCI AATT 7 cut(s) 429, 786, 1008, 1507, 1533, 1543, 1678
MluNI TGGCCA 2 cut(s) 264, 969
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 3 cut(s) 1356, 1372, 1553
Mox20I TGGCCA 2 cut(s) 264, 969
Mph1103I ATGCAT 1 cut(s) 1279
MroXI GAANNNNTTC 1 cut(s) 1613
MscI TGGCCA 2 cut(s) 264, 969
MseI TTAA 4 cut(s) 153, 557, 591, 1593
MslI CAYNNNNRTG 4 cut(s) 400, 1091, 1179, 1257
Msp20I TGGCCA 2 cut(s) 264, 969
MspA1I CMGCKG 3 cut(s) 233, 1257, 1463
MspI CCGG 2 cut(s) 368, 1356
MspR9I CCNGG 5 cut(s) 102, 368, 522, 1356, 1357
MunI CAATTG 2 cut(s) 1533, 1678
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 2 cut(s) 102, 522
MwoI GCNNNNNNNGC 3 cut(s) 270, 463, 1501
NciI CCSGG 3 cut(s) 368, 1356, 1357
NdeI CATATG 1 cut(s) 1279
NdeII GATC 5 cut(s) 79, 721, 781, 997, 1164
NlaIII CATG 7 cut(s) 444, 867, 1022, 1055, 1178, 1340, 1500
NlaIV GGNNCC 3 cut(s) 814, 1527, 1654
NmuCI GTSAC 2 cut(s) 499, 1181
NsiI ATGCAT 1 cut(s) 1279
NspI RCATGY 3 cut(s) 444, 1178, 1340
OliI CACNNNNGTG 1 cut(s) 1257
PctI GAATGC 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 1613
PfeI GAWTC 4 cut(s) 249, 745, 751, 1433
PflMI CCANNNNNTGG 1 cut(s) 1067
PkrI GCNGC 2 cut(s) 935, 1411
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
PpuMI RGGWCCY 1 cut(s) 1652
PsiI TTATAA 2 cut(s) 225, 1013
Psp5II RGGWCCY 1 cut(s) 1652
Psp6I CCWGG 2 cut(s) 100, 520
PspGI CCWGG 2 cut(s) 100, 520
PspN4I GGNNCC 3 cut(s) 814, 1527, 1654
PspPI GGNCC 7 cut(s) 180, 812, 1118, 1139, 1526, 1652, 1661
PspPPI RGGWCCY 1 cut(s) 1652
PstI CTGCAG 1 cut(s) 698
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 721
PvuII CAGCTG 1 cut(s) 1463
RsaI GTAC 4 cut(s) 685, 893, 1292, 1541
RsaNI GTAC 4 cut(s) 684, 892, 1291, 1540
RseI CAYNNNNRTG 4 cut(s) 400, 1091, 1179, 1257
SaqAI TTAA 4 cut(s) 153, 557, 591, 1593
SatI GCNGC 2 cut(s) 934, 1410
Sau3AI GATC 5 cut(s) 79, 721, 781, 997, 1164
Sau96I GGNCC 7 cut(s) 180, 812, 1118, 1139, 1526, 1652, 1661
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 5 cut(s) 102, 368, 522, 1356, 1357
SfaNI GCATC 4 cut(s) 725, 1215, 1264, 1396
SfcI CTRYAG 2 cut(s) 678, 694
SinI GGWCC 6 cut(s) 180, 812, 1118, 1526, 1652, 1661
SmaI CCCGGG 1 cut(s) 1357
SmiMI CAYNNNNRTG 4 cut(s) 400, 1091, 1179, 1257
Sse9I AATT 7 cut(s) 429, 786, 1008, 1507, 1533, 1543, 1678
SsiI CCGC 4 cut(s) 233, 933, 1204, 1257
SspI AATATT 1 cut(s) 1598
StyD4I CCNGG 5 cut(s) 100, 366, 520, 1354, 1355
TaaI ACNGT 2 cut(s) 299, 820
TaqI TCGA 5 cut(s) 547, 1000, 1146, 1325, 1436
TasI AATT 7 cut(s) 429, 786, 1008, 1507, 1533, 1543, 1678
TatI WGTACW 3 cut(s) 891, 1290, 1539
TauI GCSGC 1 cut(s) 936
TfiI GAWTC 4 cut(s) 249, 745, 751, 1433
Tru1I TTAA 4 cut(s) 153, 557, 591, 1593
Tru9I TTAA 4 cut(s) 153, 557, 591, 1593
TscAI CASTG 3 cut(s) 98, 1608, 1663
TseFI GTSAC 2 cut(s) 499, 1181
TseI GCWGC 1 cut(s) 1409
Tsp45I GTSAC 2 cut(s) 499, 1181
TspDTI ATGAA 6 cut(s) 163, 546, 779, 818, 852, 1040
TspMI CCCGGG 1 cut(s) 1355
TspRI CASTG 3 cut(s) 98, 1608, 1663
Van91I CCANNNNNTGG 1 cut(s) 1067
VpaK11BI GGWCC 6 cut(s) 180, 812, 1118, 1526, 1652, 1661
XapI RAATTY 3 cut(s) 429, 786, 1507
XceI RCATGY 3 cut(s) 444, 1178, 1340
XmaI CCCGGG 1 cut(s) 1355
XmiI GTMKAC 2 cut(s) 843, 1317
XmnI GAANNNNTTC 1 cut(s) 1613
Zsp2I ATGCAT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.