Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007670

Physical Location & Seq

Genomic Coordinates Forward (+)

28667693 .. 28668628

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0181800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCCCCACCCGGCGACGAAGCTCCGCGTGCCGTAACCAAAATCCCTGGCGACGGAATCGGACCGCTCGTCACGAACGCCGTCGAGAAGGTGATGGAGGCGATGCACGCGCCGTTTTACTTCGAGAAGTACGATGTCACCAGCGAGATGCCGAGGGTGCCGGAGGAGACCAGGCATGACAACATCGACATTGTGGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCACGAGATCATTCACGGAGTTGTTGAAAGCCTTAAAGGTTTTATGGCTTTATGGCTTTACAAATGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps62

Protein Analysis

102

Amino Acids

11.45

Weight (kDa)

4.75

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04090 AT5G43950
fragaria_vesca	FvH4_2g20520 FvH4_2g20520
malus_domestica	MD05G1189000.v1.1 MD10G1176600.v1.1
prunus_persica	Prupe.8G215600_v2.0.a1
pyrus_communis	pycom05g17360 pycom10g15250 pycom12g14800
rosa_chinensis	RchiOBHm_Chr6g0286641 RchiOBHm_Chr6g0286661
rosa_laevigata	RLG00000012553
rosa_multiflora	Rmu_sc0000560.1_g000008
rosa_roxburghii	Rroxscaffold_7G00182130 Rroxscaffold_7G00182960
rosa_rugosa	Rorug06G0181800
rosa_samantha	Rh6AG294400 Rh6BG297800 Rh6CG298100 Rh6CG298200 Rh6DG290000 Rh6DG290100
rosa_wichuraiana	Rw6G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	2 cut(s)	28, 110
AciI	CCGC	2 cut(s)	26, 65
AfaI	GTAC	2 cut(s)	131, 224
AfiI	CCNNNNNNNGG	2 cut(s)	11, 53
AgsI	TTSAA	1 cut(s)	263
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	46, 170
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	161
Ama87I	CYCGRG	2 cut(s)	226, 233
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	4 cut(s)	103, 130, 208, 230
AvaI	CYCGRG	2 cut(s)	226, 233
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	3 cut(s)	17, 65, 97
BciT130I	CCWGG	2 cut(s)	48, 172
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	3 cut(s)	12, 48, 172
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmeT110I	CYCGRG	2 cut(s)	226, 233
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	12, 48, 172
BmsI	GCATC	2 cut(s)	93, 138
BpuMI	CCSGG	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	46, 152, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 53
BseBI	CCWGG	2 cut(s)	48, 172
BseDI	CCNNGG	3 cut(s)	46, 152, 213
BseLI	CCNNNNNNNGG	2 cut(s)	11, 53
BseRI	GAGGAG	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	28, 110
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	226, 233
BsiSI	CCGG	2 cut(s)	12, 161
BslI	CCNNNNNNNGG	2 cut(s)	11, 53
BsmAI	GTCTC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	226, 233
Bsp1286I	GDGCHC	2 cut(s)	234, 240
Bsp143I	GATC	2 cut(s)	198, 243
BspACI	CCGC	2 cut(s)	26, 65
BspFNI	CGCG	2 cut(s)	28, 110
BspLI	GGNNCC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	46, 152, 213
BssMI	GATC	2 cut(s)	198, 243
BssSI	CACGAG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	2 cut(s)	48, 172
BstC8I	GCNNGC	2 cut(s)	30, 108
BstFNI	CGCG	2 cut(s)	28, 110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	201, 246
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	198, 243
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 107, 157
BstNI	CCWGG	2 cut(s)	48, 172
BstSCI	CCNGG	3 cut(s)	10, 46, 170
BstSFI	CTRYAG	1 cut(s)	305
BstUI	CGCG	2 cut(s)	28, 110
BtgZI	GCGATG	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	30, 108
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	62
CpoI	CGGWCCG	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	130, 223
CspI	CGGWCCG	1 cut(s)	62
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	5 cut(s)	23, 232, 267, 284, 292
CviKI_1	RGCY	5 cut(s)	23, 232, 267, 284, 292
CviQI	GTAC	2 cut(s)	130, 223
DpnI	GATC	2 cut(s)	200, 245
DpnII	GATC	2 cut(s)	198, 243
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	62
Eco88I	CYCGRG	2 cut(s)	226, 233
EcoRII	CCWGG	2 cut(s)	46, 170
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	1 cut(s)	179
FaiI	YATR	4 cut(s)	177, 281, 289, 307
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	234
GlaI	GCGC	1 cut(s)	111
HapII	CCGG	2 cut(s)	12, 161
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	2 cut(s)	12, 161
HphI	GGTGA	4 cut(s)	103, 130, 208, 230
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	3 cut(s)	73, 85, 124
Hpy99I	CGWCG	3 cut(s)	20, 56, 86
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 107, 157
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	198, 243
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	8 cut(s)	25, 33, 60, 154, 157, 174, 184, 187
LweI	GCATC	2 cut(s)	93, 138
MaeIII	GTNAC	3 cut(s)	34, 70, 136
MalI	GATC	2 cut(s)	200, 245
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	2 cut(s)	198, 243
MhlI	GDGCHC	2 cut(s)	234, 240
MnlI	CCTC	4 cut(s)	91, 147, 157, 208
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	2 cut(s)	12, 161
MspR9I	CCNGG	3 cut(s)	12, 48, 172
MvaI	CCWGG	2 cut(s)	48, 172
MvnI	CGCG	2 cut(s)	28, 110
MwoI	GCNNNNNNNGC	3 cut(s)	29, 107, 157
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	198, 243
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	70, 136
PaeR7I	CTCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 129
PfeI	GAWTC	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	46, 170
PspGI	CCWGG	2 cut(s)	46, 170
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	233
RsaI	GTAC	2 cut(s)	131, 224
RsaNI	GTAC	2 cut(s)	130, 223
RseI	CAYNNNNRTG	1 cut(s)	194
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	198, 243
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	12, 48, 172
SduI	GDGCHC	2 cut(s)	234, 240
SetI	ASST	3 cut(s)	25, 93, 277
SfaNI	GCATC	2 cut(s)	93, 138
SfcI	CTRYAG	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	2 cut(s)	26, 65
StyD4I	CCNGG	3 cut(s)	10, 46, 170
TaqI	TCGA	4 cut(s)	84, 123, 186, 234
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	70, 136
Tsp45I	GTSAC	2 cut(s)	70, 136
TspGWI	ACGGA	2 cut(s)	69, 267
VpaK11BI	GGWCC	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.