Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007670

Physical Location & Seq

Genomic Coordinates Reverse (-)

50063110 .. 50064869

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGGTCATTATTGCCAACTCAATGGTAAGCCTTTACAGGGCTATGTTCTTGTAGTTCGAGAAGTAGATTTGCCAGAAACAGCTGGTGTTCAGGAGCATGTGAAGTCGGCAGCTCTTCGAGAGCCACTTGATTACACACTGGTGTGGAGCCCTGGTGATGGGAATGAGGAAAGTTATGGTTCATGTGGCTACTTTTGGTTACCTGATCCACCTGAAGGTTACAGAGCAATGGGCTTTTTAGTTACCAACAAGCCAGGAAAACCTGAGTTGGATGAAGTAAGGTGTGTTAGAGCTGATTTGAATGACACATGCGAAACTCACAGCCTACTTTTTAATACCAGCATCAAATCTGCAAGTCTTCCTTTTCAAGTTTGGACTATGAGACCACGTCATCGGGGAATGATGGGGACAGGGGTCTCTGTAGGTACATTTTTCTGCAGTAGGCACTGGAGTAATGGAGAGGAACTGCAGATTGAGTGCTTGAAGAATCTGAATCCTAAGCTCTCTGGAATGCCAAATCTTGATCAAATTCATTCACTTATCAATCATTATGGACCCACTGTTTTCTTTCATCCAGAAGAGGTCTACTTGCCACCTTCTGTTGCCTGGTTCTTCAAAAATGGAGCGCTATTGTACAAAAGTGGCACAGATGTGGGCGAAGCAATTGATGAAAGTGGCTCAAATTTGCCTGGTGGGGGGACAAATGATAAGCAGTTTTGGATAGACTTGCCTAGTGGTGATCGAAGAAAGAATGTGATATATGGAAACTTGGAAAGTGCAAAACTCTACGTTCATGTGAAACCAGCTCTTGGTGGGACTTTTACTGACATTGCAATGTGGGTATTTTGTCCCTTTAATGGACCAGCCACTCTCGAAGTCGGACCTGTGGATATCGCTCTCAGCAAGATTGGACAGCATGTGAGTGACTGGGAGCATTTCACACTCCGAATATGCAACTTTACCGGAGAGCTTTGTAGTATATACTTCTCACAGCACAGTGGTGGTCAATTGGTAGATGCATACGCTTTGGAGTACATAAGCGGGAACAAAGGGTCTGCAAAGCTTGGGATTGGAATTAGGAATGATGCTGCTCGCAGTGAGTTTTCTGTGGATTCAAGCCGCCAATATGAAGTAGTTGAGGCGGAGTATCTTGGACATGGAGTTGTTACTGAGCCAGGTTGGCTGCAGTTTATGAGAGAATGGGGTCCAAAAATTGTATACAATTCAAGGACTGAGCTGGATAAGATCATCAATGTTTTGCCTGTGATGTTGAGATATCCTGTGGAGAACATCTTTTCAAAAATTCCAGTTGAGCTTTCTGGGGAGGAAGGTCCTACAGGACCAAAGGAGAAGAACAATTGCGTGGGAGATGAAAGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps62

Protein Analysis

460

Amino Acids

51.2

Weight (kDa)

5.31

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps62	PF06101	1 - 350	2.4e-161	Vacuolar protein sorting-associated protein 62
Vps62	PF06101	350 - 458	4e-45	Vacuolar protein sorting-associated protein 62

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04090 AT5G43950
fragaria_vesca	FvH4_2g20520 FvH4_2g20520
malus_domestica	MD05G1189000.v1.1 MD10G1176600.v1.1
prunus_persica	Prupe.8G215600_v2.0.a1
pyrus_communis	pycom05g17360 pycom10g15250 pycom12g14800
rosa_chinensis	RchiOBHm_Chr6g0286641 RchiOBHm_Chr6g0286661
rosa_laevigata	RLG00000012553
rosa_multiflora	Rmu_sc0000560.1_g000008
rosa_roxburghii	Rroxscaffold_7G00182130 Rroxscaffold_7G00182960
rosa_rugosa	Rorug06G0181800
rosa_samantha	Rh6AG294400 Rh6BG297800 Rh6CG298100 Rh6CG298200 Rh6DG290000 Rh6DG290100
rosa_wichuraiana	Rw6G025340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccI	GTMKAC	2 cut(s)	585, 1218
AciI	CCGC	3 cut(s)	1041, 1120, 1142
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	528, 682, 1302
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	3 cut(s)	427, 635, 1034
AfeI	AGCGCT	1 cut(s)	627
AfiI	CCNNNNNNNGG	6 cut(s)	38, 158, 215, 695, 809, 857
AgsI	TTSAA	7 cut(s)	301, 368, 484, 616, 1116, 1227, 1299
AjiI	CACGTC	1 cut(s)	389
AjnI	CCWGG	5 cut(s)	151, 253, 605, 688, 1174
AleI	CACNNNNGTG	4 cut(s)	140, 142, 650, 999
AluBI	AGCT	9 cut(s)	83, 113, 293, 502, 806, 970, 1063, 1237, 1315
AluI	AGCT	9 cut(s)	83, 113, 293, 502, 806, 970, 1063, 1237, 1315
Alw26I	GTCTC	2 cut(s)	376, 421
AlwI	GGATC	1 cut(s)	200
Aor51HI	AGCGCT	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	110, 1088, 1183
ApoI	RAATTY	3 cut(s)	528, 682, 1302
AspLEI	GCGC	1 cut(s)	628
AspS9I	GGNCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
AsuHPI	GGTGA	2 cut(s)	167, 749
AvaII	GGWCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	350
BbvI	GCAGC	3 cut(s)	122, 1075, 1170
BccI	CCATC	3 cut(s)	152, 397, 1371
BciT130I	CCWGG	5 cut(s)	153, 255, 607, 690, 1176
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	376, 421
BfaI	CTAG	1 cut(s)	732
BfmI	CTRYAG	5 cut(s)	420, 436, 467, 1184, 1335
BfoI	RGCGCY	1 cut(s)	629
BglI	GCCNNNNNGGC	1 cut(s)	1180
BisI	GCNGC	4 cut(s)	111, 1089, 1120, 1184
BlsI	GCNGC	4 cut(s)	112, 1090, 1121, 1185
Bme1390I	CCNGG	5 cut(s)	153, 255, 607, 690, 1176
Bme18I	GGWCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
BmgBI	CACGTC	1 cut(s)	389
BmgT120I	GGNCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
BmiI	GGNNCC	3 cut(s)	149, 556, 1206
BmrFI	CCNGG	5 cut(s)	153, 255, 607, 690, 1176
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	3 cut(s)	351, 1006, 1075
BmuI	ACTGGG	1 cut(s)	937
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	469
Bpu10I	CCTNAGC	1 cut(s)	498
BsaI	GGTCTC	2 cut(s)	376, 421
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	962
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 158, 215, 695, 809, 857
Bse1I	ACTGG	4 cut(s)	144, 452, 932, 1307
Bse3DI	GCAATG	3 cut(s)	234, 828, 840
BseBI	CCWGG	5 cut(s)	153, 255, 607, 690, 1176
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	277, 571
BseLI	CCNNNNNNNGG	6 cut(s)	38, 158, 215, 695, 809, 857
BseMI	GCAATG	3 cut(s)	234, 828, 840
BseMII	CTCAG	4 cut(s)	255, 913, 1161, 1224
BseNI	ACTGG	4 cut(s)	144, 452, 932, 1307
BseXI	GCAGC	3 cut(s)	122, 1075, 1170
BsiSI	CCGG	1 cut(s)	963
BslFI	GGGAC	4 cut(s)	421, 712, 829, 834
BslI	CCNNNNNNNGG	6 cut(s)	38, 158, 215, 695, 809, 857
BsmAI	GTCTC	2 cut(s)	376, 421
BsmFI	GGGAC	4 cut(s)	421, 712, 829, 834
BsmI	GAATGC	1 cut(s)	516
Bso31I	GGTCTC	2 cut(s)	376, 421
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	4 cut(s)	205, 523, 739, 1245
BspACI	CCGC	3 cut(s)	1041, 1120, 1142
BspCNI	CTCAG	4 cut(s)	256, 912, 1162, 1225
BspLI	GGNNCC	3 cut(s)	149, 556, 1206
BspMAI	CTGCAG	3 cut(s)	440, 471, 1188
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	120
BspTNI	GGTCTC	2 cut(s)	376, 421
BsrDI	GCAATG	3 cut(s)	234, 828, 840
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	4 cut(s)	144, 452, 932, 1307
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	4 cut(s)	205, 523, 739, 1245
BssNAI	GTATAC	1 cut(s)	1219
Bst1107I	GTATAC	1 cut(s)	1219
Bst2UI	CCWGG	5 cut(s)	153, 255, 607, 690, 1176
Bst4CI	ACNGT	2 cut(s)	562, 998
Bst6I	CTCTTC	2 cut(s)	120, 573
BstAUI	TGTACA	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	1093
BstDEI	CTNAG	5 cut(s)	264, 498, 899, 1170, 1233
BstEII	GGTNACC	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	277, 571
BstH2I	RGCGCY	1 cut(s)	629
BstHHI	GCGC	1 cut(s)	628
BstKTI	GATC	4 cut(s)	208, 526, 742, 1248
BstMAI	GTCTC	2 cut(s)	376, 421
BstMBI	GATC	4 cut(s)	205, 523, 739, 1245
BstMWI	GCNNNNNNNGC	1 cut(s)	1180
BstNI	CCWGG	5 cut(s)	153, 255, 607, 690, 1176
BstNSI	RCATGY	3 cut(s)	101, 312, 920
BstPAI	GACNNNNGTC	1 cut(s)	413
BstPI	GGTNACC	1 cut(s)	198
BstSCI	CCNGG	5 cut(s)	151, 253, 605, 688, 1174
BstSFI	CTRYAG	5 cut(s)	420, 436, 467, 1184, 1335
BstV1I	GCAGC	3 cut(s)	122, 1075, 1170
BstV2I	GAAGAC	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstZ17I	GTATAC	1 cut(s)	1219
BtrI	CACGTC	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	277, 571
BtsI	GCAGTG	1 cut(s)	1102
BtsIMutI	CAGTG	5 cut(s)	137, 445, 558, 1003, 1102
Cac8I	GCNNGC	1 cut(s)	1093
CfoI	GCGC	1 cut(s)	628
Cfr13I	GGNCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
Csp6I	GTAC	3 cut(s)	426, 634, 1033
CviAII	CATG	6 cut(s)	98, 183, 309, 794, 917, 1157
CviQI	GTAC	3 cut(s)	426, 634, 1033
DdeI	CTNAG	5 cut(s)	264, 498, 899, 1170, 1233
DpnI	GATC	4 cut(s)	207, 525, 741, 1247
DpnII	GATC	4 cut(s)	205, 523, 739, 1245
Eam1104I	CTCTTC	2 cut(s)	120, 573
EarI	CTCTTC	2 cut(s)	120, 573
EciI	GGCGGA	1 cut(s)	1157
Eco24I	GRGCYC	1 cut(s)	152
Eco31I	GGTCTC	2 cut(s)	376, 421
Eco32I	GATATC	2 cut(s)	892, 1277
Eco47I	GGWCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
Eco47III	AGCGCT	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	1331
EcoO65I	GGTNACC	1 cut(s)	198
EcoRII	CCWGG	5 cut(s)	151, 253, 605, 688, 1174
EcoRV	GATATC	2 cut(s)	892, 1277
EcoT22I	ATGCAT	1 cut(s)	1021
EcoT38I	GRGCYC	1 cut(s)	152
FaeI	CATG	6 cut(s)	101, 186, 312, 797, 920, 1160
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	4 cut(s)	421, 712, 829, 834
FatI	CATG	6 cut(s)	97, 182, 308, 793, 916, 1156
FauI	CCCGC	1 cut(s)	1034
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	2 cut(s)	585, 1218
Fnu4HI	GCNGC	4 cut(s)	111, 1089, 1120, 1184
FokI	GGATG	2 cut(s)	284, 558
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	111, 1089, 1120, 1184
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	1 cut(s)	627
GluI	GCNGC	4 cut(s)	111, 1089, 1120, 1184
GsuI	CTGGAG	1 cut(s)	469
HaeII	RGCGCY	1 cut(s)	629
HapII	CCGG	1 cut(s)	963
HhaI	GCGC	1 cut(s)	628
Hin1II	CATG	6 cut(s)	101, 186, 312, 797, 920, 1160
Hin6I	GCGC	1 cut(s)	626
HinP1I	GCGC	1 cut(s)	626
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	3 cut(s)	487, 493, 1112
HpaII	CCGG	1 cut(s)	963
HphI	GGTGA	2 cut(s)	167, 749
Hpy166II	GTNNAC	2 cut(s)	586, 1219
Hpy188I	TCNGA	3 cut(s)	492, 881, 947
Hpy188III	TCNNGA	7 cut(s)	59, 92, 119, 507, 521, 575, 872
Hpy8I	GTNNAC	2 cut(s)	586, 1219
HpyAV	CCTTC	3 cut(s)	209, 606, 1322
HpyCH4III	ACNGT	2 cut(s)	562, 998
HpyCH4IV	ACGT	2 cut(s)	388, 789
HpyCH4V	TGCA	9 cut(s)	353, 438, 469, 779, 833, 954, 1019, 1058, 1186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1180
HpyF3I	CTNAG	5 cut(s)	264, 498, 899, 1170, 1233
HpySE526I	ACGT	2 cut(s)	388, 789
Hsp92II	CATG	6 cut(s)	101, 186, 312, 797, 920, 1160
HspAI	GCGC	1 cut(s)	626
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	205, 523, 739, 1245
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	4 cut(s)	94, 147, 623, 931
Lsp1109I	GCAGC	3 cut(s)	122, 1075, 1170
LweI	GCATC	3 cut(s)	351, 1006, 1075
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	2 cut(s)	388, 789
MaeIII	GTNAC	5 cut(s)	198, 218, 241, 923, 1165
MalI	GATC	4 cut(s)	207, 525, 741, 1247
MboI	GATC	4 cut(s)	205, 523, 739, 1245
MboII	GAAGA	7 cut(s)	107, 350, 496, 590, 604, 756, 1363
MfeI	CAATTG	3 cut(s)	663, 1007, 1357
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	9 cut(s)	528, 663, 682, 1007, 1074, 1212, 1222, 1302, 1357
MmeI	TCCRAC	2 cut(s)	249, 859
MnlI	CCTC	5 cut(s)	160, 454, 574, 1132, 1318
Mph1103I	ATGCAT	1 cut(s)	1021
MseI	TTAA	2 cut(s)	333, 855
MslI	CAYNNNNRTG	6 cut(s)	140, 142, 650, 833, 921, 999
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	963
MspR9I	CCNGG	5 cut(s)	153, 255, 607, 690, 1176
MunI	CAATTG	3 cut(s)	663, 1007, 1357
Mva1269I	GAATGC	1 cut(s)	516
MvaI	CCWGG	5 cut(s)	153, 255, 607, 690, 1176
MwoI	GCNNNNNNNGC	1 cut(s)	1180
NdeII	GATC	4 cut(s)	205, 523, 739, 1245
NlaIII	CATG	6 cut(s)	101, 186, 312, 797, 920, 1160
NlaIV	GGNNCC	3 cut(s)	149, 556, 1206
NmuCI	GTSAC	1 cut(s)	923
NsiI	ATGCAT	1 cut(s)	1021
NspI	RCATGY	3 cut(s)	101, 312, 920
OliI	CACNNNNGTG	4 cut(s)	140, 142, 650, 999
PciSI	GCTCTTC	1 cut(s)	120
PctI	GAATGC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	487, 493, 1112
PflFI	GACNNNGTC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	4 cut(s)	112, 1090, 1121, 1185
PpuMI	RGGWCCY	1 cut(s)	1331
PshAI	GACNNNNGTC	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	1331
Psp6I	CCWGG	5 cut(s)	151, 253, 605, 688, 1174
PspEI	GGTNACC	1 cut(s)	198
PspGI	CCWGG	5 cut(s)	151, 253, 605, 688, 1174
PspN4I	GGNNCC	3 cut(s)	149, 556, 1206
PspPI	GGNCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
PspPPI	RGGWCCY	1 cut(s)	1331
PstI	CTGCAG	3 cut(s)	440, 471, 1188
PsyI	GACNNNGTC	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	3 cut(s)	427, 635, 1034
RsaNI	GTAC	3 cut(s)	426, 634, 1033
RseI	CAYNNNNRTG	6 cut(s)	140, 142, 650, 833, 921, 999
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	333, 855
SatI	GCNGC	4 cut(s)	111, 1089, 1120, 1184
Sau3AI	GATC	4 cut(s)	205, 523, 739, 1245
Sau96I	GGNCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
ScrFI	CCNGG	5 cut(s)	153, 255, 607, 690, 1176
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	3 cut(s)	351, 1006, 1075
SfcI	CTRYAG	5 cut(s)	420, 436, 467, 1184, 1335
SinI	GGWCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
SmiMI	CAYNNNNRTG	6 cut(s)	140, 142, 650, 833, 921, 999
Sse9I	AATT	9 cut(s)	528, 663, 682, 1007, 1074, 1212, 1222, 1302, 1357
SsiI	CCGC	3 cut(s)	1041, 1120, 1142
SspMI	CTAG	1 cut(s)	732
StyD4I	CCNGG	5 cut(s)	151, 253, 605, 688, 1174
TaaI	ACNGT	2 cut(s)	562, 998
TaiI	ACGT	2 cut(s)	391, 792
TaqI	TCGA	4 cut(s)	58, 118, 742, 873
TasI	AATT	9 cut(s)	528, 663, 682, 1007, 1074, 1212, 1222, 1302, 1357
TatI	WGTACW	2 cut(s)	633, 1032
TauI	GCSGC	1 cut(s)	1122
TfiI	GAWTC	3 cut(s)	487, 493, 1112
Tru1I	TTAA	2 cut(s)	333, 855
Tru9I	TTAA	2 cut(s)	333, 855
TscAI	CASTG	5 cut(s)	144, 452, 565, 1003, 1102
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	3 cut(s)	110, 1088, 1183
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	7 cut(s)	171, 288, 521, 560, 684, 782, 1143
TspRI	CASTG	5 cut(s)	144, 452, 565, 1003, 1102
Tth111I	GACNNNGTC	1 cut(s)	387
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	6 cut(s)	554, 860, 881, 1205, 1331, 1340
XapI	RAATTY	3 cut(s)	528, 682, 1302
XceI	RCATGY	3 cut(s)	101, 312, 920
XmiI	GTMKAC	2 cut(s)	585, 1218
XspI	CTAG	1 cut(s)	732
Zsp2I	ATGCAT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.