Prupe.8G241800_v2.0.a1

Belongs to the SecY SEC61-alpha family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
21160640 .. 21165251
4612 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G241800.1

Sequence Viewer

Length: 1734 bp
ATGGAAGCCGCTCTTCTCAGCTCGCAACGCTTCCATCCCCAACTCTTCCCCTCAAAATTTCGAGGTGCAATTTCAGGTTGCGATATTCAAATTTGTTGTTTGCCCCTTGCTAGAACCAGCCATGTTTCCCTTAAGACAAACCCTTTACAATCTTGCACAAGAAATTTCGTGTCGCCAAACAGGCCCTTCCCGTCCAAAGCAAACAAGAGAGTCTCTGCAAAGTTCTCAAACCAGTTCCTAAATGATTATACAAACGTCGAGGCTACGCCCCCAGAGTCTCTAAATCTTGAAGTTCCTCCACTAAGTCCCGAAGATGGCACAGAAATCTCCAAACAAAACGACATTGACAAAGCACATACCGAGCAAGCAAGGCCTCTAACATTTAGAAATCGGTTTCTGGATTTTGTGCGCTTAAGTTCAGTCCTTAACAGTGCTGCTGAGTCATTCTTCAAGAGTGAGATTCGGCGGAGGTTATTTGTGACGGCAGTACTAATAGTGATCAGTCGTGTCGGTTATTTCATTCCTCTCCCTGGATTTGATAGAAGGTTGATCCCTCAAGATTACCTGAGCTTCGTATCGGGATCTGTTGATGAACTTGGCGATTTCACAGCAGAGCTTAAAATGTCCTTCTTCCAGCTTGGAATCAGTCCTCAAATAATAGCATCGATTATTATGCAGGTACTTTGTCATCTTGTTCCCTCCCTAGTAAAGCTGCGGAAAGAAGGCTTAGATGGTCACGAGAAGATTAAGAGTTATATATGGTGGATGTCTCTTGGCTTTGCAATTGTGGAGGCCATCATACTGGCTTGTTACTCACTTCCATATTCAATCTATGCTGCTAGCTACAGGGTCAAGCATGTGATGGTGACAAGTATGTTACTGGTCTGTGGTGCGATGACAATGACTTGGATTTGTGATACCATCTCAGAATCTGGATTTGGTCAAGGTTCATCTCTAATCATATGTGTGCAAATATTGACTGGCTACACAGAGACGCTATACAAAATGTTGTCTCAGCTTTCAGGAGGTTCTGTTAGTTGGGGTCCGTACTTGCTTGCAGTATTGGGCGTTTTCACTGTAGTCACTATGTGGGCGGTTGTGGTAACTGAAGGTTGCAGGAAGATAAAGCTGCAGTACTATGGTTTTAAGCTTGCTTCTTCTGCAAGAGATGACTCGCCAATTACTGAAGTGGAGCCATATATCCCTTTTACCATTAACCCATCAGGAATGCAGCCTGTTCTCACCACCACTTATCTCTTGTCATTTCCGAGTATTCTTGCAAGTCTTCTTGGTTCGCCTTTCTGGGAGCATGTTAAGGAGATATTGAACCCTGACAATTCCGTTGGTGCAGGGCCTTGGGTGTACTACTCAATATATGCGTTTTTTGTCTTCTTATTCAATATATTTGACATTGCCAACTTGCCCAAGGAAATTGCTGATTACTTAAATAAGATGGGTGCTAGGATACCAAACATAAAACCTGGGAAGGCTACAATTGAGTACCTTACAAAGATTCAGGCATCAACACGTTTTTGGGGTGGGCTGTTGTTAAGTATATTGGCAACAACATCAAGCATACTGGATCATTATTTACGCAACATCAATGCAGGATTTGCAATTGGGTTGACGTCAGTCCTAATCATAGTGGGTTCTATAATCGAACTTAGAAGATCATATCAAGCATATAATGTAATGCCAAGTTTAAGTAAAGCCTTAAGCCGGTATGGTGTATAA

Protein Analysis

578

Amino Acids

64.23

Weight (kDa)

8.9

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1631
Acc36I ACCTGC 1 cut(s) 667
AccBSI CCGCTC 1 cut(s) 11
AciI CCGC 4 cut(s) 9, 466, 715, 1094
AclWI GGATC 3 cut(s) 544, 589, 1590
AcsI RAATTY 3 cut(s) 56, 90, 163
AcuI CTGAAG 2 cut(s) 1128, 1206
AcyI GRCGYC 1 cut(s) 1628
AdeI CACNNNGTG 1 cut(s) 1089
AfaI GTAC 6 cut(s) 489, 681, 1049, 1136, 1364, 1502
AfiI CCNNNNNNNGG 3 cut(s) 314, 530, 1719
AflII CTTAAG 3 cut(s) 131, 412, 1714
AflIII ACRYGT 1 cut(s) 1526
AgsI TTSAA 6 cut(s) 89, 290, 451, 828, 1327, 1399
AjnI CCWGG 2 cut(s) 529, 1480
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
AluBI AGCT 9 cut(s) 21, 570, 616, 637, 712, 843, 1018, 1129, 1150
AluI AGCT 9 cut(s) 21, 570, 616, 637, 712, 843, 1018, 1129, 1150
Alw26I GTCTC 5 cut(s) 217, 282, 774, 986, 1017
AlwI GGATC 3 cut(s) 544, 589, 1590
AlwNI CAGNNNCTG 1 cut(s) 932
AoxI GGCC 4 cut(s) 182, 371, 792, 1352
ApeKI GCWGC 5 cut(s) 434, 712, 836, 1129, 1231
ApoI RAATTY 3 cut(s) 56, 90, 163
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 3 cut(s) 183, 1043, 1352
AsuHPI GGTGA 2 cut(s) 877, 1234
AsuNHI GCTAGC 1 cut(s) 839
AvaII GGWCC 1 cut(s) 1043
BauI CACGAG 1 cut(s) 737
BbsI GAAGAC 2 cut(s) 1277, 1381
BbvI GCAGC 5 cut(s) 421, 699, 823, 1116, 1243
BccI CCATC 8 cut(s) 42, 308, 725, 803, 856, 929, 1228, 1447
BceAI ACGGC 1 cut(s) 498
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BciT130I CCWGG 2 cut(s) 531, 1482
BciVI GTATCC 1 cut(s) 1458
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 5 cut(s) 217, 282, 774, 986, 1017
BfaI CTAG 4 cut(s) 111, 704, 840, 1461
BfmI CTRYAG 3 cut(s) 844, 1077, 1130
BfrI CTTAAG 3 cut(s) 131, 412, 1714
BfuAI ACCTGC 1 cut(s) 667
BfuI GTATCC 1 cut(s) 1458
BglI GCCNNNNNGGC 1 cut(s) 181
BisI GCNGC 6 cut(s) 9, 435, 713, 837, 1130, 1232
BlsI GCNGC 6 cut(s) 10, 436, 714, 838, 1131, 1233
BmcAI AGTACT 2 cut(s) 489, 1136
Bme1390I CCNGG 2 cut(s) 531, 1482
Bme18I GGWCC 1 cut(s) 1043
BmgT120I GGNCC 3 cut(s) 183, 1043, 1352
BmiI GGNNCC 2 cut(s) 1044, 1194
BmrFI CCNGG 2 cut(s) 531, 1482
BmsI GCATC 2 cut(s) 671, 1529
BmtI GCTAGC 1 cut(s) 843
BoxI GACNNNNGTC 1 cut(s) 1631
BpiI GAAGAC 2 cut(s) 1277, 1381
Bpu10I CCTNAGC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 1628
BsaJI CCNNGG 4 cut(s) 529, 1355, 1425, 1481
BsaXI ACNNNNNCTCC 2 cut(s) 1017, 1047
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 530, 1719
Bse118I RCCGGY 1 cut(s) 1719
Bse1I ACTGG 5 cut(s) 232, 807, 885, 985, 1584
Bse3DI GCAATG 1 cut(s) 1410
BseBI CCWGG 2 cut(s) 531, 1482
BseCI ATCGAT 1 cut(s) 665
BseDI CCNNGG 4 cut(s) 529, 1355, 1425, 1481
BseGI GGATG 2 cut(s) 34, 771
BseLI CCNNNNNNNGG 3 cut(s) 314, 530, 1719
BseMI GCAATG 1 cut(s) 1410
BseMII CTCAG 5 cut(s) 31, 429, 557, 939, 1028
BseNI ACTGG 5 cut(s) 232, 807, 885, 985, 1584
BseXI GCAGC 5 cut(s) 421, 699, 823, 1116, 1243
BsgI GTGCAG 1 cut(s) 1368
BshFI GGCC 4 cut(s) 184, 373, 794, 1354
BshVI ATCGAT 1 cut(s) 665
BsiSI CCGG 1 cut(s) 1720
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 3 cut(s) 314, 530, 1719
BsmAI GTCTC 5 cut(s) 217, 282, 774, 986, 1017
BsmBI CGTCTC 1 cut(s) 986
BsmFI GGGAC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 1233
BsnI GGCC 4 cut(s) 184, 373, 794, 1354
Bsp143I GATC 5 cut(s) 498, 549, 581, 1582, 1670
BspACI CCGC 4 cut(s) 9, 466, 715, 1094
BspANI GGCC 4 cut(s) 184, 373, 794, 1354
BspCNI CTCAG 5 cut(s) 30, 430, 558, 938, 1027
BspDI ATCGAT 1 cut(s) 665
BspLI GGNNCC 2 cut(s) 1044, 1194
BspMAI CTGCAG 1 cut(s) 1134
BspMI ACCTGC 1 cut(s) 667
BspOI GCTAGC 1 cut(s) 843
BspPI GGATC 3 cut(s) 544, 589, 1590
BspQI GCTCTTC 1 cut(s) 18
BspTI CTTAAG 3 cut(s) 131, 412, 1714
BsrBI CCGCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 1410
BsrFI RCCGGY 1 cut(s) 1719
BsrI ACTGG 5 cut(s) 232, 807, 885, 985, 1584
BssAI RCCGGY 1 cut(s) 1719
BssECI CCNNGG 4 cut(s) 529, 1355, 1425, 1481
BssMI GATC 5 cut(s) 498, 549, 581, 1582, 1670
BssNI GRCGYC 1 cut(s) 1628
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 2 cut(s) 1355, 1425
Bst2BI CACGAG 1 cut(s) 737
Bst2UI CCWGG 2 cut(s) 531, 1482
Bst4CI ACNGT 2 cut(s) 431, 1078
Bst6I CTCTTC 2 cut(s) 18, 50
BstACI GRCGYC 1 cut(s) 1628
BstAFI CTTAAG 3 cut(s) 131, 412, 1714
BstAPI GCANNNNNTGC 1 cut(s) 1613
BstC8I GCNNGC 5 cut(s) 23, 366, 841, 1056, 1152
BstDEI CTNAG 8 cut(s) 17, 302, 438, 566, 727, 925, 1014, 1664
BstF5I GGATG 2 cut(s) 34, 771
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 5 cut(s) 501, 552, 584, 1585, 1673
BstMAI GTCTC 5 cut(s) 217, 282, 774, 986, 1017
BstMBI GATC 5 cut(s) 498, 549, 581, 1582, 1670
BstMWI GCNNNNNNNGC 5 cut(s) 27, 181, 370, 1160, 1613
BstNI CCWGG 2 cut(s) 531, 1482
BstNSI RCATGY 2 cut(s) 860, 1313
BstPAI GACNNNNGTC 1 cut(s) 1631
BstSCI CCNGG 2 cut(s) 529, 1480
BstSFI CTRYAG 3 cut(s) 844, 1077, 1130
BstV1I GCAGC 5 cut(s) 421, 699, 823, 1116, 1243
BstV2I GAAGAC 2 cut(s) 1277, 1381
BstX2I RGATCY 1 cut(s) 581
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 581
Bsu15I ATCGAT 1 cut(s) 665
BsuI GTATCC 1 cut(s) 1458
BsuRI GGCC 4 cut(s) 184, 373, 794, 1354
BsuTUI ATCGAT 1 cut(s) 665
BtgZI GCGATG 1 cut(s) 908
BtsCI GGATG 2 cut(s) 34, 771
BtsIMutI CAGTG 2 cut(s) 436, 1074
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 5 cut(s) 23, 366, 841, 1056, 1152
CaiI CAGNNNCTG 1 cut(s) 932
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 1719
Cfr13I GGNCC 3 cut(s) 183, 1043, 1352
ClaI ATCGAT 1 cut(s) 665
CseI GACGC 1 cut(s) 1003
Csp6I GTAC 6 cut(s) 488, 680, 1048, 1135, 1363, 1501
CviAII CATG 3 cut(s) 122, 857, 1310
CviQI GTAC 6 cut(s) 488, 680, 1048, 1135, 1363, 1501
DdeI CTNAG 8 cut(s) 17, 302, 438, 566, 727, 925, 1014, 1664
DpnI GATC 5 cut(s) 500, 551, 583, 1584, 1672
DpnII GATC 5 cut(s) 498, 549, 581, 1582, 1670
DraIII CACNNNGTG 1 cut(s) 1089
Eam1104I CTCTTC 2 cut(s) 18, 50
EarI CTCTTC 2 cut(s) 18, 50
EciI GGCGGA 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 1355, 1425
Eco147I AGGCCT 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 1043
Eco57I CTGAAG 2 cut(s) 1128, 1206
EcoO109I RGGNCCY 2 cut(s) 183, 1352
EcoRII CCWGG 2 cut(s) 529, 1480
EcoT14I CCWWGG 2 cut(s) 1355, 1425
ErhI CCWWGG 2 cut(s) 1355, 1425
Esp3I CGTCTC 1 cut(s) 986
FaeI CATG 3 cut(s) 125, 860, 1313
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 291
FatI CATG 3 cut(s) 121, 856, 1309
FauNDI CATATG 1 cut(s) 962
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 6 cut(s) 9, 435, 713, 837, 1130, 1232
FokI GGATG 2 cut(s) 21, 778
Fsp4HI GCNGC 6 cut(s) 9, 435, 713, 837, 1130, 1232
FspBI CTAG 4 cut(s) 111, 704, 840, 1461
GlaI GCGC 1 cut(s) 410
GluI GCNGC 6 cut(s) 9, 435, 713, 837, 1130, 1232
HaeIII GGCC 4 cut(s) 184, 373, 794, 1354
HapII CCGG 1 cut(s) 1720
HgaI GACGC 1 cut(s) 1003
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 1628
Hin1II CATG 3 cut(s) 125, 860, 1313
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 1 cut(s) 1626
HindII GTYRAC 1 cut(s) 1626
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 8 cut(s) 210, 275, 440, 460, 642, 929, 1172, 1513
HpaII CCGG 1 cut(s) 1720
HphI GGTGA 2 cut(s) 877, 1234
Hpy166II GTNNAC 2 cut(s) 1363, 1626
Hpy188I TCNGA 2 cut(s) 928, 1269
Hpy8I GTNNAC 2 cut(s) 1363, 1626
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 6 cut(s) 196, 537, 637, 716, 1103, 1480
HpyCH4III ACNGT 2 cut(s) 431, 1078
HpyCH4IV ACGT 3 cut(s) 255, 1528, 1628
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 181, 370, 1160, 1613
HpyF3I CTNAG 8 cut(s) 17, 302, 438, 566, 727, 925, 1014, 1664
HpySE526I ACGT 3 cut(s) 255, 1528, 1628
Hsp92I GRCGYC 1 cut(s) 1628
Hsp92II CATG 3 cut(s) 125, 860, 1313
HspAI GCGC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 5 cut(s) 498, 549, 581, 1582, 1670
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 1192, 1306
Lsp1109I GCAGC 5 cut(s) 421, 699, 823, 1116, 1243
LweI GCATC 2 cut(s) 671, 1529
MaeI CTAG 4 cut(s) 111, 704, 840, 1461
MaeII ACGT 3 cut(s) 255, 1528, 1628
MaeIII GTNAC 7 cut(s) 478, 734, 809, 865, 876, 1081, 1102
MalI GATC 5 cut(s) 500, 551, 583, 1584, 1672
MbiI CCGCTC 1 cut(s) 11
MboI GATC 5 cut(s) 498, 549, 581, 1582, 1670
MfeI CAATTG 3 cut(s) 783, 1494, 1617
MflI RGATCY 1 cut(s) 581
MlyI GAGTC 4 cut(s) 219, 284, 449, 1166
MslI CAYNNNNRTG 1 cut(s) 965
MspCI CTTAAG 3 cut(s) 131, 412, 1714
MspI CCGG 1 cut(s) 1720
MspR9I CCNGG 2 cut(s) 531, 1482
MunI CAATTG 3 cut(s) 783, 1494, 1617
Mva1269I GAATGC 1 cut(s) 1233
MvaI CCWGG 2 cut(s) 531, 1482
MwoI GCNNNNNNNGC 5 cut(s) 27, 181, 370, 1160, 1613
NdeI CATATG 1 cut(s) 962
NdeII GATC 5 cut(s) 498, 549, 581, 1582, 1670
NheI GCTAGC 1 cut(s) 839
NlaIII CATG 3 cut(s) 125, 860, 1313
NlaIV GGNNCC 2 cut(s) 1044, 1194
NmuCI GTSAC 4 cut(s) 478, 734, 865, 1081
NspI RCATGY 2 cut(s) 860, 1313
PceI AGGCCT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 1 cut(s) 1233
PfeI GAWTC 4 cut(s) 460, 642, 929, 1513
PkrI GCNGC 6 cut(s) 10, 436, 714, 838, 1131, 1233
PleI GAGTC 4 cut(s) 218, 283, 448, 1166
PpsI GAGTC 4 cut(s) 218, 283, 448, 1166
PshAI GACNNNNGTC 1 cut(s) 1631
Psp6I CCWGG 2 cut(s) 529, 1480
PspGI CCWGG 2 cut(s) 529, 1480
PspN4I GGNNCC 2 cut(s) 1044, 1194
PspPI GGNCC 3 cut(s) 183, 1043, 1352
PstI CTGCAG 1 cut(s) 1134
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 6 cut(s) 489, 681, 1049, 1136, 1364, 1502
RsaNI GTAC 6 cut(s) 488, 680, 1048, 1135, 1363, 1501
RseI CAYNNNNRTG 1 cut(s) 965
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 6 cut(s) 9, 435, 713, 837, 1130, 1232
Sau3AI GATC 5 cut(s) 498, 549, 581, 1582, 1670
Sau96I GGNCC 3 cut(s) 183, 1043, 1352
ScaI AGTACT 2 cut(s) 489, 1136
SchI GAGTC 4 cut(s) 219, 284, 449, 1166
ScrFI CCNGG 2 cut(s) 531, 1482
SfaNI GCATC 2 cut(s) 671, 1529
SfcI CTRYAG 3 cut(s) 844, 1077, 1130
SinI GGWCC 1 cut(s) 1043
SmiMI CAYNNNNRTG 1 cut(s) 965
SmlI CTYRAG 4 cut(s) 131, 412, 555, 1714
SmoI CTYRAG 4 cut(s) 131, 412, 555, 1714
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 4 cut(s) 9, 466, 715, 1094
SspI AATATT 1 cut(s) 975
SspMI CTAG 4 cut(s) 111, 704, 840, 1461
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 529, 1480
StyI CCWWGG 2 cut(s) 1355, 1425
TaaI ACNGT 2 cut(s) 431, 1078
TaiI ACGT 3 cut(s) 258, 1531, 1631
TaqI TCGA 4 cut(s) 61, 258, 665, 1659
TatI WGTACW 3 cut(s) 487, 1134, 1362
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 4 cut(s) 460, 642, 929, 1513
TscAI CASTG 2 cut(s) 436, 1081
TseFI GTSAC 4 cut(s) 478, 734, 865, 1081
TseI GCWGC 5 cut(s) 434, 712, 836, 1129, 1231
Tsp45I GTSAC 4 cut(s) 478, 734, 865, 1081
TspDTI ATGAA 3 cut(s) 508, 606, 939
TspGWI ACGGA 2 cut(s) 1035, 1330
TspRI CASTG 2 cut(s) 436, 1081
Vha464I CTTAAG 3 cut(s) 131, 412, 1714
VpaK11BI GGWCC 1 cut(s) 1043
XapI RAATTY 3 cut(s) 56, 90, 163
XceI RCATGY 2 cut(s) 860, 1313
XspI CTAG 4 cut(s) 111, 704, 840, 1461
ZraI GACGTC 1 cut(s) 1629
ZrmI AGTACT 2 cut(s) 489, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.