Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013275.1

Orthogroup ID

OG0008295

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6907

Gene Structure 6907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2314 bp

ggaggcgaaacctgtaatgtttaggaacaggtttctggattttgtgaggataagttcagtgattaataatgctgctgagtcgttcttcaagagtgagattaggaggaggttgtttgtgacggcagtgctgattgtgattagtcgtgttggttatttcattcctctgcctgggtttgatagaaggttgatacctcaggattatctcagctttgtctcgggatcagttgatgagctcggcgattttacagcagagcttaaaatgtccttgttccagcttggaatcagtcctcaaattatagcatcgattatcatgcaggttctctgttatgtcgtcccctccctagtaaagctgcggaaagaaggcttagatggtcaagagaagattaagagttatatatggtggatgtctcttggctttgcaattgtggaggctgtgatacttgcttgttattcacttccctattcaatctatgtagctagccacagggtcaagcatgtgatgctgacaagtatgttattggtttgtggtgcaatgacaatgacgtggatatgtgataccattacagaatctggattcggccaaggttcatctttaataatatgtgtgcaaatattgattggctacacagagacgttatacaaaatgctgacccagctttcaggaagttctgttagttggtggccatacttatttggagtattgggcgttttcactatagtcactatgtgggcagttgtggtaactgaaggatgtaggaagataaagcttcagtactacggttttaagcttgcttctgctgcaagggatgactcacctattactgaagtggagccctatataccttttactattaatccagcaggaatgcagcctgttctcacaactacttatctcttggcatttcccagcattcttgcaagtcttcttggttcgactttctgggagcatgttaaggagattttgaaccctgatacttctattggtgcagcgccttgggtgtactacacaatatatgcgttttttgtctttttattcaatatatttgacatagccaacttgcccaaggaaattgctgactacttaaataagatgggtgcaaggataccaaatataaaacctggaaaggctacgattgaatatctcacaaagattcaggcatcgacacgtttttggggtggtgtattgttaagcatcttagcaacaacatcaagcatacttgatcattatttacgtaacatcaacgcaggattttcaatcgggttgacatcagtcttaataatagtgggttcgattattgaacttagaagatcatatcaagcatataatcttccaggcaatcttgtgccttctagtcctaagtgctggaattctcagaccgatgaaacacctgcagcagaaagggttcttacattacgatctggtttaaggggactagataaaaggccgggccagttgagccgtagatatatccgtttgaaatttgaattctcagacagttgtctcgggacgaagaagatagagtcatcggagatggagttcacggccaactcactggacggctccgtcatcttccacgccattaacgaaatctcaagtttcctactcttcatgcaccagcaaatccccgcagtgttgcaggacatcaccgcggaattcgattcccgctgcgacgagtacaaggccttggaatcggctctgagagaagaccaggtgaagccggcgctgcggagaaagcacgccggcgaaatgagggaagccaagcgagggattcgaaggttccagaagctgatgcacggcgtttcgaatttccaaacggcgctgaagacggtcatcagcggaactcctcggttccgaacagcgcttctgattctcggagggaatccaatgcgacctcaacacgtgtacgaattgagcttctccggaaatgtcagtggcgaagaattggattttgcgaaaagcagagcggcggaagtgctttgtagaaaagcgattcgggggttggtctcggagaatgttgggtctgtttcgtatccgggtccttggaagctgttcctgttggttaaagctccctcttctttccatcagcctctgcattttcttcccaagcgagattttaaatacagcaacaagattgtgcctatgaggctaagcttcaaatgcaaaaaccagaaccagaacattgatcagttttcgcaaaccggcagctctgatgggttggttcagtctgctccggatggtgatgattttatatggtttcaatgtcgacatgtaatcaagggaatagcatttaacacagtacctgaaggagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008104 GO:0008150 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051641 GO:0061024 GO:0070727 GO:0071840 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecY

Protein Analysis

770

Amino Acids

86.44

Weight (kDa)

9.1

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31530
fragaria_vesca	FvH4_2g23670 FvH4_2g23670 FvH4_2g23670 FvH4_2g23670 FvH4_2g23670 FvH4_2g23670
malus_domestica	MD03G1266100.v1.1 MD11G1286500.v1.1
prunus_persica	Prupe.8G241800_v2.0.a1
pyrus_communis	pycom03g21260 pycom11g25400
rosa_chinensis	RchiOBHm_Chr6g0291131
rosa_laevigata	RLG00000012141
rosa_multiflora	Rmu_sc0004642.1_g000022 Rmu_sc0013275.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176350
rosa_rugosa	Rorug06G0217900
rosa_samantha	Rh6AG328200 Rh6BG335700 Rh6CG341800 Rh6DG329100
rosa_wichuraiana	Rw6G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1397
AasI	GACNNNNNNGTC	1 cut(s)	1563
Acc36I	ACCTGC	2 cut(s)	305, 1397
AccBSI	CCGCTC	1 cut(s)	1965
AccI	GTMKAC	1 cut(s)	2264
AccII	CGCG	1 cut(s)	1650
AccIII	TCCGGA	2 cut(s)	1920, 2231
AciI	CCGC	9 cut(s)	353, 1627, 1648, 1650, 1664, 1727, 1837, 1965, 1968
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	3 cut(s)	578, 681, 1543
AcsI	RAATTY	5 cut(s)	1367, 1479, 1485, 1653, 1805
AcuI	CTGAAG	4 cut(s)	753, 766, 844, 1842
AcvI	CACGTG	1 cut(s)	1901
AdeI	CACNNNGTG	1 cut(s)	727
AfaI	GTAC	5 cut(s)	774, 1002, 1677, 1905, 2299
AfeI	AGCGCT	1 cut(s)	1861
AfiI	CCNNNNNNNGG	2 cut(s)	168, 1765
AflIII	ACRYGT	4 cut(s)	1164, 1898, 1900, 2267
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	4 cut(s)	167, 1118, 1331, 1708
AloI	GAACNNNNNNTCC	2 cut(s)	1521, 1553
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	5 cut(s)	218, 412, 624, 1506, 2009
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	4 cut(s)	570, 1787, 2090, 2301
Ama87I	CYCGRG	2 cut(s)	215, 1503
Aor13HI	TCCGGA	2 cut(s)	1920, 2231
Aor51HI	AGCGCT	1 cut(s)	1861
AoxI	GGCC	6 cut(s)	578, 681, 1443, 1448, 1543, 1681
ApeKI	GCWGC	9 cut(s)	72, 350, 798, 869, 987, 1392, 1666, 1724, 2203
ApoI	RAATTY	5 cut(s)	1367, 1479, 1485, 1653, 1805
AseI	ATTAAT	2 cut(s)	64, 853
Asp700I	GAANNNNTTC	2 cut(s)	1402, 2049
AspLEI	GCGC	4 cut(s)	992, 1724, 1820, 1862
AspS9I	GGNCC	2 cut(s)	1448, 2037
AsuC2I	CCSGG	2 cut(s)	1447, 2035
AsuHPI	GGTGA	4 cut(s)	805, 1637, 1724, 2250
AsuII	TTCGAA	2 cut(s)	1772, 1803
AsuNHI	GCTAGC	1 cut(s)	477
AvaI	CYCGRG	2 cut(s)	215, 1503
AvaII	GGWCC	1 cut(s)	2037
AxyI	CCTNAGG	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	235, 835
BbrPI	CACGTG	1 cut(s)	1901
BbsI	GAAGAC	3 cut(s)	915, 1711, 1830
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	9 cut(s)	59, 337, 785, 881, 999, 1404, 1653, 1711, 2215
BccI	CCATC	6 cut(s)	363, 1085, 1526, 2089, 2205, 2229
BceAI	ACGGC	6 cut(s)	136, 1444, 1558, 1574, 1811, 1831
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	4 cut(s)	169, 1120, 1333, 1710
BciVI	GTATCC	2 cut(s)	1096, 2041
BclI	TGATCA	2 cut(s)	1220, 2183
BcnI	CCSGG	2 cut(s)	1447, 2035
BcoDI	GTCTC	5 cut(s)	218, 412, 624, 1506, 2009
BfaI	CTAG	4 cut(s)	342, 478, 1351, 1434
BfmI	CTRYAG	2 cut(s)	715, 1390
BfoI	RGCGCY	4 cut(s)	993, 1725, 1821, 1863
BfuAI	ACCTGC	2 cut(s)	305, 1397
BfuI	GTATCC	2 cut(s)	1096, 2041
BglI	GCCNNNNNGGC	1 cut(s)	2144
BlpI	GCTNAGC	1 cut(s)	2148
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	6 cut(s)	169, 1120, 1333, 1447, 1710, 2035
Bme18I	GGWCC	1 cut(s)	2037
BmeT110I	CYCGRG	2 cut(s)	215, 1503
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	1448, 2037
BmiI	GGNNCC	5 cut(s)	832, 1562, 1779, 1851, 2038
BmrFI	CCNGG	6 cut(s)	169, 1120, 1333, 1447, 1710, 2035
BmsI	GCATC	5 cut(s)	309, 490, 1167, 1201, 1780
BmtI	GCTAGC	1 cut(s)	481
BoxI	GACNNNNGTC	2 cut(s)	1269, 1498
BpiI	GAAGAC	3 cut(s)	915, 1711, 1830
Bpu1102I	GCTNAGC	1 cut(s)	2148
Bpu14I	TTCGAA	2 cut(s)	1772, 1803
BpuEI	CTTGAG	1 cut(s)	1577
BpuMI	CCSGG	2 cut(s)	1447, 2035
Bsa29I	ATCGAT	1 cut(s)	303
BsaAI	YACGTR	2 cut(s)	1233, 1901
BsaI	GGTCTC	1 cut(s)	2009
BsaJI	CCNNGG	8 cut(s)	168, 581, 993, 1063, 1648, 1684, 1845, 2040
BsaWI	WCCGGW	2 cut(s)	1920, 2231
BsaXI	ACNNNNNCTCC	2 cut(s)	1521, 1551
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 1765
Bse118I	RCCGGY	3 cut(s)	1718, 1740, 2199
Bse1I	ACTGG	2 cut(s)	1451, 1558
Bse21I	CCTNAGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	538
BseAI	TCCGGA	2 cut(s)	1920, 2231
BseBI	CCWGG	4 cut(s)	169, 1120, 1333, 1710
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	8 cut(s)	168, 581, 993, 1063, 1648, 1684, 1845, 2040
BseGI	GGATG	4 cut(s)	409, 756, 812, 2240
BseLI	CCNNNNNNNGG	2 cut(s)	168, 1765
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	6 cut(s)	67, 207, 218, 1386, 1504, 1689
BseNI	ACTGG	2 cut(s)	1451, 1558
BseRI	GAGGAG	2 cut(s)	119, 1834
BseXI	GCAGC	9 cut(s)	59, 337, 785, 881, 999, 1404, 1653, 1711, 2215
BseYI	CCCAGC	2 cut(s)	652, 906
BsgI	GTGCAG	1 cut(s)	1006
Bsh1236I	CGCG	1 cut(s)	1650
BshFI	GGCC	6 cut(s)	580, 683, 1445, 1450, 1545, 1683
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	2 cut(s)	215, 1503
BsiSI	CCGG	7 cut(s)	1446, 1719, 1741, 1921, 2034, 2200, 2232
BslFI	GGGAC	3 cut(s)	318, 1444, 1520
BslI	CCNNNNNNNGG	2 cut(s)	168, 1765
BsmAI	GTCTC	5 cut(s)	218, 412, 624, 1506, 2009
BsmBI	CGTCTC	1 cut(s)	624
BsmFI	GGGAC	3 cut(s)	318, 1444, 1520
BsmI	GAATGC	2 cut(s)	871, 910
BsnI	GGCC	6 cut(s)	580, 683, 1445, 1450, 1545, 1683
Bso31I	GGTCTC	1 cut(s)	2009
BsoBI	CYCGRG	2 cut(s)	215, 1503
Bsp119I	TTCGAA	2 cut(s)	1772, 1803
Bsp1286I	GDGCHC	2 cut(s)	235, 835
Bsp13I	TCCGGA	2 cut(s)	1920, 2231
Bsp143I	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
Bsp1720I	GCTNAGC	1 cut(s)	2148
BspACI	CCGC	9 cut(s)	353, 1627, 1648, 1650, 1664, 1727, 1837, 1965, 1968
BspANI	GGCC	6 cut(s)	580, 683, 1445, 1450, 1545, 1683
BspCNI	CTCAG	6 cut(s)	68, 206, 217, 1385, 1503, 1690
BspDI	ATCGAT	1 cut(s)	303
BspEI	TCCGGA	2 cut(s)	1920, 2231
BspFNI	CGCG	1 cut(s)	1650
BspLI	GGNNCC	5 cut(s)	832, 1562, 1779, 1851, 2038
BspMAI	CTGCAG	1 cut(s)	1394
BspMI	ACCTGC	2 cut(s)	305, 1397
BspOI	GCTAGC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	2 cut(s)	1772, 1803
BspTNI	GGTCTC	1 cut(s)	2009
BsrBI	CCGCTC	1 cut(s)	1965
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	3 cut(s)	1718, 1740, 2199
BsrI	ACTGG	2 cut(s)	1451, 1558
BssAI	RCCGGY	3 cut(s)	1718, 1740, 2199
BssECI	CCNNGG	8 cut(s)	168, 581, 993, 1063, 1648, 1684, 1845, 2040
BssMI	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
BssT1I	CCWWGG	5 cut(s)	581, 993, 1063, 1684, 2040
Bst2UI	CCWGG	4 cut(s)	169, 1120, 1333, 1710
Bst4CI	ACNGT	4 cut(s)	780, 1497, 1829, 2297
Bst6I	CTCTTC	2 cut(s)	1611, 2078
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	2 cut(s)	1233, 1901
BstBI	TTCGAA	2 cut(s)	1772, 1803
BstC8I	GCNNGC	5 cut(s)	479, 790, 1720, 1738, 1742
BstDSI	CCRYGG	1 cut(s)	1648
BstF5I	GGATG	4 cut(s)	409, 756, 812, 2240
BstFNI	CGCG	1 cut(s)	1650
BstH2I	RGCGCY	4 cut(s)	993, 1725, 1821, 1863
BstHHI	GCGC	4 cut(s)	992, 1724, 1820, 1862
BstKTI	GATC	5 cut(s)	222, 1223, 1311, 1419, 2186
BstMAI	GTCTC	5 cut(s)	218, 412, 624, 1506, 2009
BstMBI	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
BstMWI	GCNNNNNNNGC	8 cut(s)	500, 653, 798, 1456, 1724, 1733, 2144, 2158
BstNI	CCWGG	4 cut(s)	169, 1120, 1333, 1710
BstNSI	RCATGY	3 cut(s)	498, 951, 2271
BstPAI	GACNNNNGTC	2 cut(s)	1269, 1498
BstSCI	CCNGG	6 cut(s)	167, 1118, 1331, 1445, 1708, 2033
BstSFI	CTRYAG	2 cut(s)	715, 1390
BstSNI	TACGTA	1 cut(s)	1233
BstUI	CGCG	1 cut(s)	1650
BstV1I	GCAGC	9 cut(s)	59, 337, 785, 881, 999, 1404, 1653, 1711, 2215
BstV2I	GAAGAC	3 cut(s)	915, 1711, 1830
BstXI	CCANNNNNNTGG	1 cut(s)	1553
Bsu15I	ATCGAT	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	193
BsuI	GTATCC	2 cut(s)	1096, 2041
BsuRI	GGCC	6 cut(s)	580, 683, 1445, 1450, 1545, 1683
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	1648
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	4 cut(s)	409, 756, 812, 2240
BtsI	GCAGTG	2 cut(s)	130, 1636
BtsIMutI	CAGTG	5 cut(s)	64, 130, 1551, 1636, 1937
BveI	ACCTGC	2 cut(s)	305, 1397
Cac8I	GCNNGC	5 cut(s)	479, 790, 1720, 1738, 1742
CaiI	CAGNNNCTG	4 cut(s)	570, 1787, 2090, 2301
CfoI	GCGC	4 cut(s)	992, 1724, 1820, 1862
Cfr10I	RCCGGY	3 cut(s)	1718, 1740, 2199
Cfr13I	GGNCC	2 cut(s)	1448, 2037
Cfr42I	CCGCGG	1 cut(s)	1651
ClaI	ATCGAT	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	1708
Csp6I	GTAC	5 cut(s)	773, 1001, 1676, 1904, 2298
CviAII	CATG	5 cut(s)	311, 495, 948, 1610, 2268
CviQI	GTAC	5 cut(s)	773, 1001, 1676, 1904, 2298
DpnI	GATC	5 cut(s)	221, 1222, 1310, 1418, 2185
DpnII	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
DraI	TTTAAA	1 cut(s)	2117
DraIII	CACNNNGTG	1 cut(s)	727
DrdI	GACNNNNNNGTC	1 cut(s)	1563
DseDI	GACNNNNNNGTC	1 cut(s)	1563
EaeI	YGGCCR	3 cut(s)	578, 681, 1543
Eam1104I	CTCTTC	2 cut(s)	1611, 2078
EarI	CTCTTC	2 cut(s)	1611, 2078
EciI	GGCGGA	1 cut(s)	1983
Ecl136II	GAGCTC	1 cut(s)	233
Eco105I	TACGTA	1 cut(s)	1233
Eco130I	CCWWGG	5 cut(s)	581, 993, 1063, 1684, 2040
Eco147I	AGGCCT	1 cut(s)	1683
Eco24I	GRGCYC	2 cut(s)	235, 835
Eco31I	GGTCTC	1 cut(s)	2009
Eco47I	GGWCC	1 cut(s)	2037
Eco47III	AGCGCT	1 cut(s)	1861
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	4 cut(s)	753, 766, 844, 1842
Eco72I	CACGTG	1 cut(s)	1901
Eco81I	CCTNAGG	1 cut(s)	193
Eco88I	CYCGRG	2 cut(s)	215, 1503
EcoICRI	GAGCTC	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	2037
EcoRI	GAATTC	3 cut(s)	1367, 1485, 1653
EcoRII	CCWGG	4 cut(s)	167, 1118, 1331, 1708
EcoT14I	CCWWGG	5 cut(s)	581, 993, 1063, 1684, 2040
EcoT38I	GRGCYC	2 cut(s)	235, 835
ErhI	CCWWGG	5 cut(s)	581, 993, 1063, 1684, 2040
Esp3I	CGTCTC	1 cut(s)	624
FaeI	CATG	5 cut(s)	314, 498, 951, 1613, 2271
FaqI	GGGAC	3 cut(s)	318, 1444, 1520
FatI	CATG	5 cut(s)	310, 494, 947, 1609, 2267
FauI	CCCGC	2 cut(s)	1634, 1671
FbaI	TGATCA	2 cut(s)	1220, 2183
FblI	GTMKAC	1 cut(s)	2264
FokI	GGATG	4 cut(s)	416, 763, 819, 2247
FriOI	GRGCYC	2 cut(s)	235, 835
FspBI	CTAG	4 cut(s)	342, 478, 1351, 1434
GlaI	GCGC	4 cut(s)	991, 1723, 1819, 1861
GsaI	CCCAGC	2 cut(s)	656, 910
HaeII	RGCGCY	4 cut(s)	993, 1725, 1821, 1863
HaeIII	GGCC	6 cut(s)	580, 683, 1445, 1450, 1545, 1683
HapII	CCGG	7 cut(s)	1446, 1719, 1741, 1921, 2034, 2200, 2232
HhaI	GCGC	4 cut(s)	992, 1724, 1820, 1862
Hin1II	CATG	5 cut(s)	314, 498, 951, 1613, 2271
Hin6I	GCGC	4 cut(s)	990, 1722, 1818, 1860
HinP1I	GCGC	4 cut(s)	990, 1722, 1818, 1860
HincII	GTYRAC	2 cut(s)	1264, 2265
HindII	GTYRAC	2 cut(s)	1264, 2265
HindIII	AAGCTT	3 cut(s)	765, 786, 2150
HpaII	CCGG	7 cut(s)	1446, 1719, 1741, 1921, 2034, 2200, 2232
HphI	GGTGA	4 cut(s)	805, 1637, 1724, 2250
Hpy166II	GTNNAC	5 cut(s)	1001, 1264, 1540, 1904, 2265
Hpy188I	TCNGA	9 cut(s)	1375, 1493, 1529, 1699, 1854, 1867, 1875, 2009, 2210
Hpy8I	GTNNAC	5 cut(s)	1001, 1264, 1540, 1904, 2265
Hpy99I	CGWCG	1 cut(s)	1674
HpyAV	CCTTC	6 cut(s)	175, 354, 741, 1357, 1768, 2298
HpyCH4III	ACNGT	4 cut(s)	780, 1497, 1829, 2297
HpyCH4IV	ACGT	5 cut(s)	543, 633, 1166, 1232, 1900
HpyF10VI	GCNNNNNNNGC	8 cut(s)	500, 653, 798, 1456, 1724, 1733, 2144, 2158
HpySE526I	ACGT	5 cut(s)	543, 633, 1166, 1232, 1900
Hsp92II	CATG	5 cut(s)	314, 498, 951, 1613, 2271
HspAI	GCGC	4 cut(s)	990, 1722, 1818, 1860
Kpn2I	TCCGGA	2 cut(s)	1920, 2231
KroI	GCCGGC	2 cut(s)	1718, 1740
KroNI	GCCGGC	2 cut(s)	1720, 1742
Ksp22I	TGATCA	2 cut(s)	1220, 2183
KspI	CCGCGG	1 cut(s)	1651
Kzo9I	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
LmnI	GCTCC	5 cut(s)	830, 944, 1566, 2072, 2234
Lsp1109I	GCAGC	9 cut(s)	59, 337, 785, 881, 999, 1404, 1653, 1711, 2215
LweI	GCATC	5 cut(s)	309, 490, 1167, 1201, 1780
MabI	ACCWGGT	1 cut(s)	1708
MaeI	CTAG	4 cut(s)	342, 478, 1351, 1434
MaeII	ACGT	5 cut(s)	543, 633, 1166, 1232, 1900
MaeIII	GTNAC	4 cut(s)	116, 719, 740, 1233
MalI	GATC	5 cut(s)	221, 1222, 1310, 1418, 2185
MbiI	CCGCTC	1 cut(s)	1965
MboI	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
MfeI	CAATTG	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	235, 835
MlsI	TGGCCA	1 cut(s)	683
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	3 cut(s)	87, 804, 1530
Mox20I	TGGCCA	1 cut(s)	683
MreI	CGCCGGCG	1 cut(s)	1740
MroI	TCCGGA	2 cut(s)	1920, 2231
MroNI	GCCGGC	2 cut(s)	1718, 1740
MroXI	GAANNNNTTC	2 cut(s)	1402, 2049
MscI	TGGCCA	1 cut(s)	683
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	3 cut(s)	1650, 1666, 1837
MspI	CCGG	7 cut(s)	1446, 1719, 1741, 1921, 2034, 2200, 2232
MspR9I	CCNGG	6 cut(s)	169, 1120, 1333, 1447, 1710, 2035
MunI	CAATTG	1 cut(s)	421
Mva1269I	GAATGC	2 cut(s)	871, 910
MvaI	CCWGG	4 cut(s)	169, 1120, 1333, 1710
MvnI	CGCG	1 cut(s)	1650
MwoI	GCNNNNNNNGC	8 cut(s)	500, 653, 798, 1456, 1724, 1733, 2144, 2158
NaeI	GCCGGC	2 cut(s)	1720, 1742
NciI	CCSGG	2 cut(s)	1447, 2035
NdeII	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
NgoMIV	GCCGGC	2 cut(s)	1718, 1740
NheI	GCTAGC	1 cut(s)	477
NlaIII	CATG	5 cut(s)	314, 498, 951, 1613, 2271
NlaIV	GGNNCC	5 cut(s)	832, 1562, 1779, 1851, 2038
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	116, 719
NspI	RCATGY	3 cut(s)	498, 951, 2271
NspV	TTCGAA	2 cut(s)	1772, 1803
PaqCI	CACCTGC	1 cut(s)	1397
PceI	AGGCCT	1 cut(s)	1683
PciI	ACATGT	1 cut(s)	2267
PcsI	WCGNNNNNNNCGW	1 cut(s)	1582
PctI	GAATGC	2 cut(s)	871, 910
PdiI	GCCGGC	2 cut(s)	1720, 1742
PdmI	GAANNNNTTC	2 cut(s)	1402, 2049
PleI	GAGTC	3 cut(s)	86, 804, 1529
PmaCI	CACGTG	1 cut(s)	1901
PmlI	CACGTG	1 cut(s)	1901
PpsI	GAGTC	3 cut(s)	86, 804, 1529
Ppu21I	YACGTR	2 cut(s)	1233, 1901
PpuMI	RGGWCCY	1 cut(s)	2037
PscI	ACATGT	1 cut(s)	2267
PshAI	GACNNNNGTC	2 cut(s)	1269, 1498
PshBI	ATTAAT	2 cut(s)	64, 853
Psp124BI	GAGCTC	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	2037
Psp6I	CCWGG	4 cut(s)	167, 1118, 1331, 1708
PspCI	CACGTG	1 cut(s)	1901
PspFI	CCCAGC	2 cut(s)	652, 906
PspGI	CCWGG	4 cut(s)	167, 1118, 1331, 1708
PspN4I	GGNNCC	5 cut(s)	832, 1562, 1779, 1851, 2038
PspPI	GGNCC	2 cut(s)	1448, 2037
PspPPI	RGGWCCY	1 cut(s)	2037
PstI	CTGCAG	1 cut(s)	1394
PstNI	CAGNNNCTG	4 cut(s)	570, 1787, 2090, 2301
RsaI	GTAC	5 cut(s)	774, 1002, 1677, 1905, 2299
RsaNI	GTAC	5 cut(s)	773, 1001, 1676, 1904, 2298
SacI	GAGCTC	1 cut(s)	235
SacII	CCGCGG	1 cut(s)	1651
SalI	GTCGAC	1 cut(s)	2263
Sau3AI	GATC	5 cut(s)	219, 1220, 1308, 1416, 2183
Sau96I	GGNCC	2 cut(s)	1448, 2037
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	3 cut(s)	87, 804, 1530
ScrFI	CCNGG	6 cut(s)	169, 1120, 1333, 1447, 1710, 2035
SduI	GDGCHC	2 cut(s)	235, 835
SexAI	ACCWGGT	1 cut(s)	1708
SfaNI	GCATC	5 cut(s)	309, 490, 1167, 1201, 1780
SfcI	CTRYAG	2 cut(s)	715, 1390
Sfr303I	CCGCGG	1 cut(s)	1651
SfuI	TTCGAA	2 cut(s)	1772, 1803
SgrAI	CRCCGGYG	1 cut(s)	1740
SgrBI	CCGCGG	1 cut(s)	1651
SinI	GGWCC	1 cut(s)	2037
SmlI	CTYRAG	1 cut(s)	1592
SmoI	CTYRAG	1 cut(s)	1592
SnaBI	TACGTA	1 cut(s)	1233
SseBI	AGGCCT	1 cut(s)	1683
SsiI	CCGC	9 cut(s)	353, 1627, 1648, 1650, 1664, 1727, 1837, 1965, 1968
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	4 cut(s)	342, 478, 1351, 1434
SstI	GAGCTC	1 cut(s)	235
StuI	AGGCCT	1 cut(s)	1683
StyD4I	CCNGG	6 cut(s)	167, 1118, 1331, 1445, 1708, 2033
StyI	CCWWGG	5 cut(s)	581, 993, 1063, 1684, 2040
TaaI	ACNGT	4 cut(s)	780, 1497, 1829, 2297
TaiI	ACGT	5 cut(s)	546, 636, 1169, 1235, 1903
TaqI	TCGA	8 cut(s)	303, 933, 1161, 1290, 1657, 1772, 1803, 2264
TaqII	GACCGA	1 cut(s)	1392
TatI	WGTACW	3 cut(s)	772, 1000, 1675
TauI	GCSGC	1 cut(s)	1968
TscAI	CASTG	5 cut(s)	64, 130, 1558, 1636, 1937
TseFI	GTSAC	2 cut(s)	116, 719
TseI	GCWGC	9 cut(s)	72, 350, 798, 869, 987, 1392, 1666, 1724, 2203
Tsp45I	GTSAC	2 cut(s)	116, 719
TspDTI	ATGAA	4 cut(s)	146, 577, 1396, 1598
TspGWI	ACGGA	2 cut(s)	1461, 1553
TspRI	CASTG	5 cut(s)	64, 130, 1558, 1636, 1937
VpaK11BI	GGWCC	1 cut(s)	2037
VspI	ATTAAT	2 cut(s)	64, 853
XapI	RAATTY	5 cut(s)	1367, 1479, 1485, 1653, 1805
XceI	RCATGY	3 cut(s)	498, 951, 2271
XmiI	GTMKAC	1 cut(s)	2264
XmnI	GAANNNNTTC	2 cut(s)	1402, 2049
XspI	CTAG	4 cut(s)	342, 478, 1351, 1434
ZrmI	AGTACT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.