pycom03g21260

Belongs to the SecY SEC61-alpha family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
21572140 .. 21576799
4660 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21260.11

Sequence Viewer

Length: 1674 bp
ATGGAAGCCGCTCTTCTGAGCTCGCAACGCTTCCATCCCAAGCTTTCACCCGAAAATTCTCGAGGTGCAGTTTCAGGTAGTGAAATTCAAATTTGTTGTTTGCCCCTTGTTAGGAATAGCTATGTTTCACTTAGGACAAACCCTAGAAATTTCATGTTTCCAAACAGTCCCTTATTGTCCAGATTGAACAGAAGAGTCTCTGTTAAGTTCTCGAAACAGTTCGTGAATGATTATACAAATGTTGAGGCTACACCTCCAGAGTCTCTAAATGTTGAAGTTAATCCGTTGAGTGGGAGTGACAGGACGGAAATTTCAAAACAGAACGCGGTTGAGAATGCAAAGGCGGAGCAGGCGGGATCTATCACGTTTAGAAACCGGTTTCTGAATTTCGTGCGCCTGAGTTCAGTGGTTAATAATGCTGCTGAATCATTCTTCAAGAGCGAGATTAGGAGGAGGCTGTTTGTGACAGCAGTGCTAATTGTAATTAGTCGTGTCGGTTATTTCATTCCTCTGCCTGGATTTGATAGAAGGTTAATCCCTCAAGATTACCTAAGCTTTGTATCGGGATCTGTTGATGAACTCGGTGATTTTGCAGCAGAGCTTAAAATGTCTTTCTTTCAGCTTGGAATCAGTCCTCAAATCATAGCGTCAATCATCATGCAGGTACTCTGTCATGTTGTTCCCTCCCTGGTAAAGCTGCGGAAGGAAGGCTTAGATGGTCATGAGAAGATTAAGAGTTATATATGGTGGCTGTCTTTCGGCTTTGCAATAGTGGAAGCTATAATACTTGCTTGTTATTCACTTCCATATTCAATCTATGCGGCTAGCTACAGGGTCAAGCATGTGATGGTGACAAGTATGTTATTGGTTTGTGGAGCAATGGCAATGACGTGGATTTGTGATACCATCTCAGAATCTGGATTTGGTCAAGGTTCATCTCTAATTATTTGTGTACAAATATTGATTGGCTACACAGAGACATTATACAAAATGCTGTCTCAGCTCTCAGGAAGTTCTGTTAGTTGGGGCCCATATTTATTTGCAGTATTGGGCGTTTTCACTATAGTCACTATGTGGGCAGTTGTGGTGACTGAAGGGTGCAGGAAGATAAAGCTGCAGTACTATGGTTTTAAGCTTGCTTCTGCTGCAAGAGATGACTCACCTATTACCGAAGTGGAGCCCTATATCCCTTTTACCATTAACCCATCAGGAATGCAGCCTGTTCTCACCACTACTTATCTCTTGGCATTTCCCAGCATTCTTGCAAGTATTCTTGGTTCACCTTTCTGGGAGCATGTTAAGGAGATATTGAACCCCGAAAATACTATTGGTGCAGGGCCTTGGGTGTACTACTCAATATATGCGTTTTTTGTGTTCTTATTCAATATATTTGACATTGCCAACTTGCCCAAGGAAATTGCTGATTACTTGAATAAGATGGGTGCGAGGATACCAAACATAAAACCTGGGAAGGCTACAATTGAGTACCTTACAAAGATTCAGGCATCGACACGTTTCTGGGGGGGGCTATTGTTAAGTATCTTGGCAACAGCATCAAGCATAATCGACCATTATTTACGCAATATCAATGCGGGATTTGCAATTGGGTTGACATCAGTCCTAATAATAGTGGGTTCTATTATTGAACTTAGAACGATCATATCAGGCATATAA

Protein Analysis

558

Amino Acids

61.86

Weight (kDa)

8.92

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 652
AccBSI CCGCTC 1 cut(s) 11
AccII CGCG 1 cut(s) 326
AciI CCGC 7 cut(s) 9, 326, 344, 353, 700, 821, 1592
AclWI GGATC 2 cut(s) 364, 574
AcsI RAATTY 6 cut(s) 55, 84, 90, 148, 309, 385
AcuI CTGAAG 1 cut(s) 1113
AdeI CACNNNGTG 1 cut(s) 1074
AfaI GTAC 5 cut(s) 666, 954, 1121, 1349, 1487
AfiI CCNNNNNNNGG 3 cut(s) 111, 290, 515
AflIII ACRYGT 1 cut(s) 1511
AgeI ACCGGT 1 cut(s) 375
AjiI CACGTC 1 cut(s) 891
AjnI CCWGG 3 cut(s) 514, 687, 1465
AjuI GAANNNNNNNTTGG 4 cut(s) 906, 938, 1311, 1343
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 4 cut(s) 202, 267, 971, 1002
AlwI GGATC 2 cut(s) 364, 574
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 1027, 1337
ApaI GGGCCC 1 cut(s) 1031
ApeKI GCWGC 6 cut(s) 419, 593, 697, 1114, 1145, 1216
ApoI RAATTY 6 cut(s) 55, 84, 90, 148, 309, 385
AsiGI ACCGGT 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 218
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 1027, 1028, 1337
AsuHPI GGTGA 7 cut(s) 39, 596, 862, 1099, 1152, 1219, 1272
AsuNHI GCTAGC 1 cut(s) 824
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 1031
BanII GRGCYC 3 cut(s) 23, 1031, 1182
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 6 cut(s) 406, 605, 684, 1101, 1132, 1228
BccI CCATC 6 cut(s) 42, 710, 841, 914, 1213, 1432
BciT130I CCWGG 3 cut(s) 516, 689, 1467
BciVI GTATCC 1 cut(s) 1443
BcoDI GTCTC 4 cut(s) 202, 267, 971, 1002
BfaI CTAG 2 cut(s) 144, 825
BfmI CTRYAG 3 cut(s) 829, 1062, 1115
BfuAI ACCTGC 1 cut(s) 652
BfuI GTATCC 1 cut(s) 1443
BisI GCNGC 8 cut(s) 9, 420, 594, 698, 822, 1115, 1146, 1217
BlsI GCNGC 8 cut(s) 10, 421, 595, 699, 823, 1116, 1147, 1218
BmcAI AGTACT 1 cut(s) 1121
Bme1390I CCNGG 3 cut(s) 516, 689, 1467
BmeT110I CYCGRG 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 891
BmgT120I GGNCC 3 cut(s) 1027, 1028, 1337
BmiI GGNNCC 3 cut(s) 1028, 1029, 1179
BmrFI CCNGG 3 cut(s) 516, 689, 1467
BmsI GCATC 2 cut(s) 1514, 1562
BmtI GCTAGC 1 cut(s) 828
BoxI GACNNNNGTC 1 cut(s) 1616
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 525
BsaJI CCNNGG 4 cut(s) 687, 1340, 1410, 1466
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 290, 515
Bse118I RCCGGY 1 cut(s) 375
Bse3DI GCAATG 3 cut(s) 885, 891, 1395
BseBI CCWGG 3 cut(s) 516, 689, 1467
BseDI CCNNGG 4 cut(s) 687, 1340, 1410, 1466
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 111, 290, 515
BseMI GCAATG 3 cut(s) 885, 891, 1395
BseMII CTCAG 5 cut(s) 8, 389, 924, 1013, 1020
BseRI GAGGAG 1 cut(s) 466
BseSI GKGCMC 1 cut(s) 1031
BseXI GCAGC 6 cut(s) 406, 605, 684, 1101, 1132, 1228
BseYI CCCAGC 1 cut(s) 1253
BsgI GTGCAG 3 cut(s) 87, 1120, 1353
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 2 cut(s) 1029, 1339
BshTI ACCGGT 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 3 cut(s) 111, 290, 515
BsmAI GTCTC 4 cut(s) 202, 267, 971, 1002
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 3 cut(s) 340, 1218, 1257
BsnI GGCC 2 cut(s) 1029, 1339
BsoBI CYCGRG 1 cut(s) 60
Bsp120I GGGCCC 1 cut(s) 1027
Bsp1286I GDGCHC 3 cut(s) 23, 1031, 1182
Bsp1407I TGTACA 1 cut(s) 952
Bsp143I GATC 3 cut(s) 356, 566, 1656
BspACI CCGC 7 cut(s) 9, 326, 344, 353, 700, 821, 1592
BspANI GGCC 2 cut(s) 1029, 1339
BspCNI CTCAG 5 cut(s) 9, 390, 923, 1012, 1019
BspFNI CGCG 1 cut(s) 326
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 1028, 1029, 1179
BspMAI CTGCAG 1 cut(s) 1119
BspMI ACCTGC 1 cut(s) 652
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 2 cut(s) 364, 574
BspQI GCTCTTC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 11
BsrDI GCAATG 3 cut(s) 885, 891, 1395
BsrFI RCCGGY 1 cut(s) 375
BsrGI TGTACA 1 cut(s) 952
BssAI RCCGGY 1 cut(s) 375
BssECI CCNNGG 4 cut(s) 687, 1340, 1410, 1466
BssMI GATC 3 cut(s) 356, 566, 1656
BssT1I CCWWGG 2 cut(s) 1340, 1410
Bst2UI CCWGG 3 cut(s) 516, 689, 1467
Bst4CI ACNGT 2 cut(s) 167, 219
Bst6I CTCTTC 2 cut(s) 18, 187
BstAUI TGTACA 1 cut(s) 952
BstC8I GCNNGC 4 cut(s) 23, 351, 826, 1137
BstDEI CTNAG 9 cut(s) 17, 131, 398, 551, 712, 910, 999, 1006, 1649
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 3 cut(s) 359, 569, 1659
BstMAI GTCTC 4 cut(s) 202, 267, 971, 1002
BstMBI GATC 3 cut(s) 356, 566, 1656
BstMWI GCNNNNNNNGC 5 cut(s) 27, 350, 1000, 1145, 1598
BstNI CCWGG 3 cut(s) 516, 689, 1467
BstNSI RCATGY 2 cut(s) 845, 1298
BstPAI GACNNNNGTC 1 cut(s) 1616
BstSCI CCNGG 3 cut(s) 514, 687, 1465
BstSFI CTRYAG 3 cut(s) 829, 1062, 1115
BstSLI GKGCMC 1 cut(s) 1031
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 6 cut(s) 406, 605, 684, 1101, 1132, 1228
BstX2I RGATCY 2 cut(s) 356, 566
BstYI RGATCY 2 cut(s) 356, 566
BsuI GTATCC 1 cut(s) 1443
BsuRI GGCC 2 cut(s) 1029, 1339
BtrI CACGTC 1 cut(s) 891
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 411, 477
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 4 cut(s) 23, 351, 826, 1137
CaiI CAGNNNCTG 1 cut(s) 917
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 3 cut(s) 1027, 1028, 1337
CseI GACGC 1 cut(s) 636
Csp6I GTAC 5 cut(s) 665, 953, 1120, 1348, 1486
CspAI ACCGGT 1 cut(s) 375
CviAII CATG 6 cut(s) 154, 658, 674, 722, 842, 1295
CviQI GTAC 5 cut(s) 665, 953, 1120, 1348, 1486
DdeI CTNAG 9 cut(s) 17, 131, 398, 551, 712, 910, 999, 1006, 1649
DpnI GATC 3 cut(s) 358, 568, 1658
DpnII GATC 3 cut(s) 356, 566, 1656
DraIII CACNNNGTG 1 cut(s) 1074
Eam1104I CTCTTC 2 cut(s) 18, 187
EarI CTCTTC 2 cut(s) 18, 187
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 1340, 1410
Eco24I GRGCYC 3 cut(s) 23, 1031, 1182
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 1113
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 21
EcoO109I RGGNCCY 2 cut(s) 1027, 1337
EcoRII CCWGG 3 cut(s) 514, 687, 1465
EcoT14I CCWWGG 2 cut(s) 1340, 1410
EcoT38I GRGCYC 3 cut(s) 23, 1031, 1182
ErhI CCWWGG 2 cut(s) 1340, 1410
FaeI CATG 6 cut(s) 157, 661, 677, 725, 845, 1298
FalI AAGNNNNNCTT 3 cut(s) 29, 695, 727
FaqI GGGAC 1 cut(s) 153
FatI CATG 6 cut(s) 153, 657, 673, 721, 841, 1294
FauI CCCGC 2 cut(s) 346, 1585
Fnu4HI GCNGC 8 cut(s) 9, 420, 594, 698, 822, 1115, 1146, 1217
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 3 cut(s) 23, 1031, 1182
Fsp4HI GCNGC 8 cut(s) 9, 420, 594, 698, 822, 1115, 1146, 1217
FspBI CTAG 2 cut(s) 144, 825
GlaI GCGC 1 cut(s) 395
GluI GCNGC 8 cut(s) 9, 420, 594, 698, 822, 1115, 1146, 1217
GsaI CCCAGC 1 cut(s) 1257
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 2 cut(s) 1029, 1339
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 636
HhaI GCGC 1 cut(s) 396
Hin1II CATG 6 cut(s) 157, 661, 677, 725, 845, 1298
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 1611
HindII GTYRAC 1 cut(s) 1611
HindIII AAGCTT 3 cut(s) 41, 553, 1133
HinfI GANTC 7 cut(s) 195, 260, 425, 627, 914, 1157, 1498
HpaII CCGG 1 cut(s) 376
HphI GGTGA 7 cut(s) 39, 596, 862, 1099, 1152, 1219, 1272
Hpy166II GTNNAC 4 cut(s) 953, 1280, 1348, 1611
Hpy188I TCNGA 3 cut(s) 18, 384, 913
Hpy8I GTNNAC 4 cut(s) 953, 1280, 1348, 1611
HpyAV CCTTC 5 cut(s) 522, 697, 701, 1088, 1465
HpyCH4III ACNGT 2 cut(s) 167, 219
HpyCH4IV ACGT 3 cut(s) 365, 890, 1513
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 350, 1000, 1145, 1598
HpyF3I CTNAG 9 cut(s) 17, 131, 398, 551, 712, 910, 999, 1006, 1649
HpySE526I ACGT 3 cut(s) 365, 890, 1513
Hsp92II CATG 6 cut(s) 157, 661, 677, 725, 845, 1298
HspAI GCGC 1 cut(s) 394
Kzo9I GATC 3 cut(s) 356, 566, 1656
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 4 cut(s) 346, 875, 1177, 1291
Lsp1109I GCAGC 6 cut(s) 406, 605, 684, 1101, 1132, 1228
LweI GCATC 2 cut(s) 1514, 1562
MaeI CTAG 2 cut(s) 144, 825
MaeII ACGT 3 cut(s) 365, 890, 1513
MaeIII GTNAC 5 cut(s) 296, 463, 850, 1066, 1087
MalI GATC 3 cut(s) 358, 568, 1658
MbiI CCGCTC 1 cut(s) 11
MboI GATC 3 cut(s) 356, 566, 1656
MboII GAAGA 5 cut(s) 5, 204, 424, 739, 1117
MfeI CAATTG 2 cut(s) 1479, 1602
MflI RGATCY 2 cut(s) 356, 566
MhlI GDGCHC 3 cut(s) 23, 1031, 1182
MlyI GAGTC 3 cut(s) 204, 269, 1151
MroXI GAANNNNTTC 1 cut(s) 218
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 3 cut(s) 516, 689, 1467
MunI CAATTG 2 cut(s) 1479, 1602
Mva1269I GAATGC 3 cut(s) 340, 1218, 1257
MvaI CCWGG 3 cut(s) 516, 689, 1467
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 5 cut(s) 27, 350, 1000, 1145, 1598
NdeII GATC 3 cut(s) 356, 566, 1656
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 6 cut(s) 157, 661, 677, 725, 845, 1298
NlaIV GGNNCC 3 cut(s) 1028, 1029, 1179
NmuCI GTSAC 5 cut(s) 296, 463, 850, 1066, 1087
NspI RCATGY 2 cut(s) 845, 1298
PaeR7I CTCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 721
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 3 cut(s) 340, 1218, 1257
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 4 cut(s) 425, 627, 914, 1498
PinAI ACCGGT 1 cut(s) 375
PkrI GCNGC 8 cut(s) 10, 421, 595, 699, 823, 1116, 1147, 1218
PleI GAGTC 3 cut(s) 203, 268, 1151
PpsI GAGTC 3 cut(s) 203, 268, 1151
PshAI GACNNNNGTC 1 cut(s) 1616
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 3 cut(s) 514, 687, 1465
PspFI CCCAGC 1 cut(s) 1253
PspGI CCWGG 3 cut(s) 514, 687, 1465
PspN4I GGNNCC 3 cut(s) 1028, 1029, 1179
PspOMI GGGCCC 1 cut(s) 1027
PspPI GGNCC 3 cut(s) 1027, 1028, 1337
PsrI GAACNNNNNNTAC 2 cut(s) 1261, 1293
PstI CTGCAG 1 cut(s) 1119
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 2 cut(s) 356, 566
RsaI GTAC 5 cut(s) 666, 954, 1121, 1349, 1487
RsaNI GTAC 5 cut(s) 665, 953, 1120, 1348, 1486
SacI GAGCTC 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 8 cut(s) 9, 420, 594, 698, 822, 1115, 1146, 1217
Sau3AI GATC 3 cut(s) 356, 566, 1656
Sau96I GGNCC 3 cut(s) 1027, 1028, 1337
ScaI AGTACT 1 cut(s) 1121
SchI GAGTC 3 cut(s) 204, 269, 1151
ScrFI CCNGG 3 cut(s) 516, 689, 1467
SduI GDGCHC 3 cut(s) 23, 1031, 1182
SfaNI GCATC 2 cut(s) 1514, 1562
SfcI CTRYAG 3 cut(s) 829, 1062, 1115
Sfr274I CTCGAG 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 60, 540
SmoI CTYRAG 2 cut(s) 60, 540
SsiI CCGC 7 cut(s) 9, 326, 344, 353, 700, 821, 1592
SspI AATATT 1 cut(s) 960
SspMI CTAG 2 cut(s) 144, 825
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 514, 687, 1465
StyI CCWWGG 2 cut(s) 1340, 1410
TaaI ACNGT 2 cut(s) 167, 219
TaiI ACGT 3 cut(s) 368, 893, 1516
TaqI TCGA 4 cut(s) 61, 212, 1508, 1566
TatI WGTACW 3 cut(s) 952, 1119, 1347
TauI GCSGC 2 cut(s) 11, 824
TfiI GAWTC 4 cut(s) 425, 627, 914, 1498
TscAI CASTG 2 cut(s) 411, 477
TseFI GTSAC 5 cut(s) 296, 463, 850, 1066, 1087
TseI GCWGC 6 cut(s) 419, 593, 697, 1114, 1145, 1216
Tsp45I GTSAC 5 cut(s) 296, 463, 850, 1066, 1087
TspDTI ATGAA 4 cut(s) 142, 493, 591, 924
TspGWI ACGGA 2 cut(s) 273, 320
TspRI CASTG 2 cut(s) 411, 477
XapI RAATTY 6 cut(s) 55, 84, 90, 148, 309, 385
XceI RCATGY 2 cut(s) 845, 1298
XhoI CTCGAG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 2 cut(s) 144, 825
ZrmI AGTACT 1 cut(s) 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.