Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Reverse (-)

34816397 .. 34819907

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0217900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCATCTGAAAGTGGTGTTGAGGGAGACAAATATCGTTACTATTTGAATGGAGATGGAGAGAGGAGCACCAAATGGAAGTTTGGTACACCTCCCAACTATGAGGTTGTTAACAAACTTTTCGAAGAAGGCAGAACCAAGATATGGCCAGCTGGGTCACTAGAAGAAAAGGTGCAGAGCCTAGTAAAGACATGGGAGATGGAACTTTTCCACAAAGCTAACGTTGAGGATTTCAAGACACTTGATCCCAACAAGTACACTTTCAGCCTAAATGGGAGGAAAGGGATAAATTTGGAAGAAATAGGAAAACTAGGAGGAGGATACAACCCTTTGCTTCAGACCACACTGCCTGAGAATCTGAGGGGCTATAATCCTGAAGTGGAAACATCTGAATCATCACATAAGGCTTTCACAACAACATTCCCAAGAGGATTTGCGTTGGAGATTCTTCAAGTCATTTCTGGGCCGCCGCAGATCGTGTACAAATTCAGGCACTGGGGTTACATGGAGGGCCCTTTCAAAAGCCATGCCCCAACTGGAGAACTTGTTGAGGTCTATGGAATGGCCATTTTTGAGTTGGACGAGAATGAAAAAATCGTGAAGGTGGAGTTCTTTTACGACCCAGGACAGCTACTTGGTGGACTTTTGAAGGGTGCAAAAGTGGGTTCTTCTTCTGAGGAGACTGCTACAGGCTGCCCTATCCTAAGGAGTACTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

239

Amino Acids

26.76

Weight (kDa)

5.42

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	2 cut(s)	467, 470
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	2 cut(s)	146, 564
AcsI	RAATTY	2 cut(s)	289, 485
AcuI	CTGAAG	2 cut(s)	320, 396
AfaI	GTAC	4 cut(s)	88, 257, 482, 712
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	49, 235, 452, 520, 649
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	3 cut(s)	152, 218, 631
AluI	AGCT	3 cut(s)	152, 218, 631
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	21, 674
AlwI	GGATC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	495
AoxI	GGCC	4 cut(s)	146, 464, 511, 564
ApaI	GGGCCC	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	693
ApoI	RAATTY	2 cut(s)	289, 485
AspS9I	GGNCC	3 cut(s)	464, 511, 512
AsuII	TTCGAA	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	515
BalI	TGGCCA	2 cut(s)	148, 566
BanII	GRGCYC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	2 cut(s)	50, 193
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	21, 674
BfaI	CTAG	3 cut(s)	161, 182, 311
BfmI	CTRYAG	1 cut(s)	687
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	467, 470, 694
BlsI	GCNGC	3 cut(s)	468, 471, 695
BmcAI	AGTACT	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	624
BmgT120I	GGNCC	3 cut(s)	464, 511, 512
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	622
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	3 cut(s)	500, 541, 718
Bse21I	CCTNAGG	1 cut(s)	704
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	342, 350, 666
BseNI	ACTGG	3 cut(s)	500, 541, 718
BseRI	GAGGAG	3 cut(s)	79, 330, 692
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	680
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	4 cut(s)	148, 466, 513, 566
BsiHKAI	GWGCWC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	21, 674
BsnI	GGCC	4 cut(s)	148, 466, 513, 566
Bsp119I	TTCGAA	1 cut(s)	123
Bsp120I	GGGCCC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	71, 515
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	244, 474
BspACI	CCGC	2 cut(s)	467, 470
BspANI	GGCC	4 cut(s)	148, 466, 513, 566
BspCNI	CTCAG	3 cut(s)	343, 351, 667
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	500, 541, 718
BssECI	CCNNGG	1 cut(s)	622
BssMI	GATC	2 cut(s)	244, 474
Bst2UI	CCWGG	1 cut(s)	624
BstAUI	TGTACA	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	4 cut(s)	351, 359, 675, 704
BstKTI	GATC	2 cut(s)	247, 477
BstMAI	GTCTC	2 cut(s)	21, 674
BstMBI	GATC	2 cut(s)	244, 474
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	687
BstSLI	GKGCMC	1 cut(s)	515
BstV1I	GCAGC	1 cut(s)	680
Bsu36I	CCTNAGG	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	148, 466, 513, 566
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	344, 493
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	495
Cfr13I	GGNCC	3 cut(s)	464, 511, 512
Csp6I	GTAC	4 cut(s)	87, 256, 481, 711
CviAII	CATG	3 cut(s)	192, 505, 527
CviQI	GTAC	4 cut(s)	87, 256, 481, 711
DdeI	CTNAG	4 cut(s)	351, 359, 675, 704
DpnI	GATC	2 cut(s)	246, 476
DpnII	GATC	2 cut(s)	244, 474
EaeI	YGGCCR	2 cut(s)	146, 564
Eco24I	GRGCYC	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	320, 396
Eco81I	CCTNAGG	1 cut(s)	704
EcoO109I	RGGNCCY	2 cut(s)	511, 512
EcoRII	CCWGG	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	515
FaeI	CATG	3 cut(s)	195, 508, 530
FaiI	YATR	8 cut(s)	102, 145, 193, 369, 402, 506, 528, 558
FatI	CATG	3 cut(s)	191, 504, 526
Fnu4HI	GCNGC	3 cut(s)	467, 470, 694
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	467, 470, 694
FspBI	CTAG	3 cut(s)	161, 182, 311
GluI	GCNGC	3 cut(s)	467, 470, 694
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	4 cut(s)	148, 466, 513, 566
Hin1II	CATG	3 cut(s)	195, 508, 530
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	355, 392, 445
HpaI	GTTAAC	1 cut(s)	112
Hpy166II	GTNNAC	5 cut(s)	89, 112, 258, 481, 641
Hpy188I	TCNGA	5 cut(s)	10, 339, 360, 391, 676
Hpy188III	TCNNGA	3 cut(s)	235, 374, 598
Hpy8I	GTNNAC	5 cut(s)	89, 112, 258, 481, 641
HpyAV	CCTTC	3 cut(s)	122, 595, 643
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	175, 656
HpyF3I	CTNAG	4 cut(s)	351, 359, 675, 704
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	195, 508, 530
KspAI	GTTAAC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	244, 474
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	3 cut(s)	161, 182, 311
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	38, 156, 500
MalI	GATC	2 cut(s)	246, 476
MboI	GATC	2 cut(s)	244, 474
MboII	GAAGA	6 cut(s)	137, 176, 308, 440, 660, 663
MhlI	GDGCHC	2 cut(s)	71, 515
MlsI	TGGCCA	2 cut(s)	148, 566
MluCI	AATT	2 cut(s)	289, 485
MluNI	TGGCCA	2 cut(s)	148, 566
MmeI	TCCRAC	2 cut(s)	420, 558
Mox20I	TGGCCA	2 cut(s)	148, 566
MscI	TGGCCA	2 cut(s)	148, 566
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	2 cut(s)	148, 566
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	624
NdeII	GATC	2 cut(s)	244, 474
NlaIII	CATG	3 cut(s)	195, 508, 530
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	156
NspV	TTCGAA	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	355, 392, 445
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	468, 471, 695
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	622
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	513
PspOMI	GGGCCC	1 cut(s)	511
PspPI	GGNCC	3 cut(s)	464, 511, 512
PstNI	CAGNNNCTG	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	4 cut(s)	88, 257, 482, 712
RsaNI	GTAC	4 cut(s)	87, 256, 481, 711
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	467, 470, 694
Sau3AI	GATC	2 cut(s)	244, 474
Sau96I	GGNCC	3 cut(s)	464, 511, 512
ScaI	AGTACT	1 cut(s)	712
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	2 cut(s)	71, 515
SetI	ASST	9 cut(s)	94, 108, 154, 174, 220, 225, 555, 606, 633
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	123
Sse9I	AATT	2 cut(s)	289, 485
SsiI	CCGC	2 cut(s)	467, 470
SspMI	CTAG	3 cut(s)	161, 182, 311
StyD4I	CCNGG	1 cut(s)	622
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	289, 485
TatI	WGTACW	3 cut(s)	255, 480, 710
TauI	GCSGC	2 cut(s)	469, 472
TfiI	GAWTC	3 cut(s)	355, 392, 445
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	351, 500
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	603
TspRI	CASTG	2 cut(s)	351, 500
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	289, 485
XcmI	CCANNNNNNNNNTGG	2 cut(s)	533, 574
XspI	CTAG	3 cut(s)	161, 182, 311
ZrmI	AGTACT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.