Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Reverse (-)

40397290 .. 40399469

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTCCAAAAGCCTAGTTCTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGTTGTCAAGTCCACTATCCAAGGGGCCGAATGATAGTAGAGGGCTGGGTGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATATCTTACTTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTCAGATGGTGCAAACAAACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGCTGGAGCTTCAAGGGAGCATGAAATACTTGCTGAAATAAGAGATGCTATTTTCTCTTTTATTCGTAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCGTTGAGAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGAGGTAGCAGCCCTGGAAGAAGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

220

Amino Acids

23.3

Weight (kDa)

5.17

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	8 - 49	5.6e-13	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	86, 516, 586
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	307, 411
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	6 cut(s)	110, 206, 401, 407, 556, 623
AluI	AGCT	6 cut(s)	110, 206, 401, 407, 556, 623
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	99, 164
ApeKI	GCWGC	4 cut(s)	341, 386, 556, 638
ApoI	RAATTY	3 cut(s)	86, 516, 586
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	4 cut(s)	4, 100, 164, 254
AsuHPI	GGTGA	2 cut(s)	256, 540
AvaII	GGWCC	2 cut(s)	4, 254
BbvI	GCAGC	4 cut(s)	328, 373, 543, 650
BccI	CCATC	3 cut(s)	221, 347, 572
BciT130I	CCWGG	1 cut(s)	644
BciVI	GTATCC	1 cut(s)	514
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	5 cut(s)	15, 104, 203, 543, 593
BfmI	CTRYAG	4 cut(s)	213, 279, 387, 557
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	4 cut(s)	342, 387, 557, 639
BlsI	GCNGC	4 cut(s)	343, 388, 558, 640
Bme1390I	CCNGG	1 cut(s)	644
Bme18I	GGWCC	2 cut(s)	4, 254
BmgT120I	GGNCC	4 cut(s)	4, 100, 164, 254
BmiI	GGNNCC	4 cut(s)	40, 49, 165, 474
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	2 cut(s)	363, 433
BpmI	CTGGAG	2 cut(s)	423, 609
BsaJI	CCNNGG	2 cut(s)	159, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	40, 612, 626
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	2 cut(s)	159, 642
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	3 cut(s)	40, 612, 626
BseXI	GCAGC	4 cut(s)	328, 373, 543, 650
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	101, 166
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	2 cut(s)	101, 166
Bsp143I	GATC	3 cut(s)	29, 136, 545
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	2 cut(s)	101, 166
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	4 cut(s)	40, 49, 165, 474
BspMAI	CTGCAG	4 cut(s)	217, 283, 391, 561
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	40, 612, 626
BssECI	CCNNGG	2 cut(s)	159, 642
BssMI	GATC	3 cut(s)	29, 136, 545
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	2 cut(s)	235, 335
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	112, 540
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	3 cut(s)	32, 139, 548
BstMBI	GATC	3 cut(s)	29, 136, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 212
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	642
BstSFI	CTRYAG	4 cut(s)	213, 279, 387, 557
BstV1I	GCAGC	4 cut(s)	328, 373, 543, 650
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	101, 166
Cac8I	GCNNGC	2 cut(s)	112, 540
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr13I	GGNCC	4 cut(s)	4, 100, 164, 254
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	329, 419, 496
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	3 cut(s)	31, 138, 547
DpnII	GATC	3 cut(s)	29, 136, 545
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	4, 254
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	332, 422, 499
FaiI	YATR	4 cut(s)	330, 420, 497, 525
FatI	CATG	3 cut(s)	328, 418, 495
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	342, 387, 557, 639
Fsp4HI	GCNGC	4 cut(s)	342, 387, 557, 639
FspBI	CTAG	5 cut(s)	15, 104, 203, 543, 593
GluI	GCNGC	4 cut(s)	342, 387, 557, 639
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	2 cut(s)	423, 609
HaeIII	GGCC	2 cut(s)	101, 166
Hin1II	CATG	3 cut(s)	332, 422, 499
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	2 cut(s)	256, 540
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	92, 352
Hpy188III	TCNNGA	2 cut(s)	257, 593
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	204, 592
HpyCH4III	ACNGT	2 cut(s)	235, 335
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	71, 215, 281, 359, 389, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 212
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	3 cut(s)	332, 422, 499
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	29, 136, 545
LmnI	GCTCC	3 cut(s)	404, 415, 628
Lsp1109I	GCAGC	4 cut(s)	328, 373, 543, 650
LweI	GCATC	2 cut(s)	363, 433
MaeI	CTAG	5 cut(s)	15, 104, 203, 543, 593
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	121, 208
MalI	GATC	3 cut(s)	31, 138, 547
MboI	GATC	3 cut(s)	29, 136, 545
MboII	GAAGA	2 cut(s)	119, 659
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	4 cut(s)	86, 393, 516, 586
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	3 cut(s)	173, 474, 625
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	267, 396
MspR9I	CCNGG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	107, 212
NdeII	GATC	3 cut(s)	29, 136, 545
NlaIII	CATG	3 cut(s)	332, 422, 499
NlaIV	GGNNCC	4 cut(s)	40, 49, 165, 474
NmuCI	GTSAC	2 cut(s)	121, 208
PdmI	GAANNNNTTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	343, 388, 558, 640
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	4 cut(s)	40, 49, 165, 474
PspPI	GGNCC	4 cut(s)	4, 100, 164, 254
PspPPI	RGGWCCY	1 cut(s)	254
PstI	CTGCAG	4 cut(s)	217, 283, 391, 561
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	267, 396
SatI	GCNGC	4 cut(s)	342, 387, 557, 639
Sau3AI	GATC	3 cut(s)	29, 136, 545
Sau96I	GGNCC	4 cut(s)	4, 100, 164, 254
SbfI	CCTGCAGG	1 cut(s)	283
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	644
SdaI	CCTGCAGG	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	363, 433
SfcI	CTRYAG	4 cut(s)	213, 279, 387, 557
SinI	GGWCC	2 cut(s)	4, 254
Sse8387I	CCTGCAGG	1 cut(s)	283
Sse9I	AATT	4 cut(s)	86, 393, 516, 586
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	5 cut(s)	15, 104, 203, 543, 593
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	235, 335
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	630
TasI	AATT	4 cut(s)	86, 393, 516, 586
Tru1I	TTAA	2 cut(s)	267, 396
Tru9I	TTAA	2 cut(s)	267, 396
TseFI	GTSAC	2 cut(s)	121, 208
TseI	GCWGC	4 cut(s)	341, 386, 556, 638
Tsp45I	GTSAC	2 cut(s)	121, 208
TspDTI	ATGAA	2 cut(s)	186, 435
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	4, 254
XapI	RAATTY	3 cut(s)	86, 516, 586
XbaI	TCTAGA	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	5 cut(s)	15, 104, 203, 543, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.