Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

40077643 .. 40092991

Gene Structure 15349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTCCAAAAGCCTAGTTCTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGGTGAAAAGGTTCAAACTGAAATTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAGAAGACAAGCCTGAGATCACTCCTAGGGAGCAAGGAGTCATTGAGGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATATCTTACTTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTTCAGATGGTGCAAACAAACTTTTGATGCTGTAATTAAAGCTGGGGCTTCTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGCTGTTTTCTCTTTTATTCATAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCTTTGAGAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCTTGGAAGACGTCCTGTTCCTTACGACAATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

255

Amino Acids

27.82

Weight (kDa)

6.35

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	8 - 85	1.3e-20	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	744
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	86, 606, 676
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	154, 409
AluBI	AGCT	5 cut(s)	110, 308, 491, 646, 713
AluI	AGCT	5 cut(s)	110, 308, 491, 646, 713
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	443, 646, 728
ApoI	RAATTY	3 cut(s)	86, 606, 676
Asp700I	GAANNNNTTC	2 cut(s)	86, 149
AspA2I	CCTAGG	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	4, 100, 356
AsuHPI	GGTGA	3 cut(s)	154, 358, 630
AvaII	GGWCC	2 cut(s)	4, 356
AvrII	CCTAGG	1 cut(s)	247
BbsI	GAAGAC	2 cut(s)	233, 744
BbvI	GCAGC	3 cut(s)	430, 633, 740
BccI	CCATC	3 cut(s)	323, 450, 662
BciVI	GTATCC	1 cut(s)	604
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	8 cut(s)	15, 104, 221, 248, 305, 501, 633, 683
BfmI	CTRYAG	3 cut(s)	315, 381, 647
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	3 cut(s)	444, 647, 729
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	3 cut(s)	445, 648, 730
Bme18I	GGWCC	2 cut(s)	4, 356
BmgT120I	GGNCC	3 cut(s)	4, 100, 356
BmiI	GGNNCC	3 cut(s)	40, 49, 564
BmsI	GCATC	2 cut(s)	466, 523
BpiI	GAAGAC	2 cut(s)	233, 744
BpmI	CTGGAG	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	247, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	40, 702, 716
BseDI	CCNNGG	2 cut(s)	247, 732
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	227, 351
BseNI	ACTGG	3 cut(s)	40, 702, 716
BseXI	GCAGC	3 cut(s)	430, 633, 740
BseYI	CCCAGC	1 cut(s)	491
BshFI	GGCC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	29, 136, 239, 635
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	228, 352
BspLI	GGNNCC	3 cut(s)	40, 49, 564
BspMAI	CTGCAG	3 cut(s)	319, 385, 651
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	40, 702, 716
BssECI	CCNNGG	2 cut(s)	247, 732
BssMI	GATC	4 cut(s)	29, 136, 239, 635
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	2 cut(s)	247, 732
Bst4CI	ACNGT	2 cut(s)	337, 437
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	741
BstC8I	GCNNGC	2 cut(s)	112, 630
BstDEI	CTNAG	2 cut(s)	236, 360
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	32, 139, 242, 638
BstMBI	GATC	4 cut(s)	29, 136, 239, 635
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 314
BstSFI	CTRYAG	3 cut(s)	315, 381, 647
BstV1I	GCAGC	3 cut(s)	430, 633, 740
BstV2I	GAAGAC	2 cut(s)	233, 744
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	112, 630
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	4, 100, 356
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	3 cut(s)	431, 509, 586
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	236, 360
DpnI	GATC	4 cut(s)	31, 138, 241, 637
DpnII	GATC	4 cut(s)	29, 136, 239, 635
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	247, 732
Eco47I	GGWCC	2 cut(s)	4, 356
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	247, 732
ErhI	CCWWGG	2 cut(s)	247, 732
FaeI	CATG	3 cut(s)	434, 512, 589
FaiI	YATR	5 cut(s)	432, 510, 555, 587, 615
FatI	CATG	3 cut(s)	430, 508, 585
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	444, 647, 729
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	444, 647, 729
FspBI	CTAG	8 cut(s)	15, 104, 221, 248, 305, 501, 633, 683
GluI	GCNGC	3 cut(s)	444, 647, 729
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	3 cut(s)	434, 512, 589
HinfI	GANTC	3 cut(s)	124, 182, 260
HphI	GGTGA	3 cut(s)	154, 358, 630
Hpy188I	TCNGA	2 cut(s)	92, 455
Hpy188III	TCNNGA	3 cut(s)	221, 359, 683
HpyAV	CCTTC	2 cut(s)	306, 682
HpyCH4III	ACNGT	2 cut(s)	337, 437
HpyCH4IV	ACGT	2 cut(s)	702, 741
HpyCH4V	TGCA	6 cut(s)	71, 170, 317, 383, 462, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 314
HpyF3I	CTNAG	2 cut(s)	236, 360
HpySE526I	ACGT	2 cut(s)	702, 741
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	3 cut(s)	434, 512, 589
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	29, 136, 239, 635
LmnI	GCTCC	3 cut(s)	252, 505, 718
Lsp1109I	GCAGC	3 cut(s)	430, 633, 740
LweI	GCATC	2 cut(s)	466, 523
MaeI	CTAG	8 cut(s)	15, 104, 221, 248, 305, 501, 633, 683
MaeII	ACGT	2 cut(s)	702, 741
MaeIII	GTNAC	2 cut(s)	121, 310
MalI	GATC	4 cut(s)	31, 138, 241, 637
MboI	GATC	4 cut(s)	29, 136, 239, 635
MboII	GAAGA	3 cut(s)	119, 238, 749
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	6 cut(s)	86, 161, 483, 606, 676, 763
MlyI	GAGTC	2 cut(s)	118, 269
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	199, 261, 275, 564
MroXI	GAANNNNTTC	2 cut(s)	86, 149
MseI	TTAA	5 cut(s)	192, 201, 369, 486, 766
MwoI	GCNNNNNNNGC	2 cut(s)	107, 314
NdeII	GATC	4 cut(s)	29, 136, 239, 635
NlaIII	CATG	3 cut(s)	434, 512, 589
NlaIV	GGNNCC	3 cut(s)	40, 49, 564
NmuCI	GTSAC	2 cut(s)	121, 310
PdmI	GAANNNNTTC	2 cut(s)	86, 149
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	445, 648, 730
PleI	GAGTC	2 cut(s)	118, 268
PpsI	GAGTC	2 cut(s)	118, 268
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	491
PspN4I	GGNNCC	3 cut(s)	40, 49, 564
PspPI	GGNCC	3 cut(s)	4, 100, 356
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	3 cut(s)	319, 385, 651
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	192, 201, 369, 486, 766
SatI	GCNGC	3 cut(s)	444, 647, 729
Sau3AI	GATC	4 cut(s)	29, 136, 239, 635
Sau96I	GGNCC	3 cut(s)	4, 100, 356
SbfI	CCTGCAGG	1 cut(s)	385
SchI	GAGTC	2 cut(s)	118, 269
SdaI	CCTGCAGG	1 cut(s)	385
SfaNI	GCATC	2 cut(s)	466, 523
SfcI	CTRYAG	3 cut(s)	315, 381, 647
SinI	GGWCC	2 cut(s)	4, 356
Sse8387I	CCTGCAGG	1 cut(s)	385
Sse9I	AATT	6 cut(s)	86, 161, 483, 606, 676, 763
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	8 cut(s)	15, 104, 221, 248, 305, 501, 633, 683
StyI	CCWWGG	2 cut(s)	247, 732
TaaI	ACNGT	2 cut(s)	337, 437
TaiI	ACGT	2 cut(s)	705, 744
TasI	AATT	6 cut(s)	86, 161, 483, 606, 676, 763
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	5 cut(s)	192, 201, 369, 486, 766
Tru9I	TTAA	5 cut(s)	192, 201, 369, 486, 766
TseFI	GTSAC	2 cut(s)	121, 310
TseI	GCWGC	3 cut(s)	443, 646, 728
Tsp45I	GTSAC	2 cut(s)	121, 310
TspDTI	ATGAA	5 cut(s)	195, 210, 288, 525, 542
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	4, 356
XapI	RAATTY	3 cut(s)	86, 606, 676
XbaI	TCTAGA	2 cut(s)	220, 682
XmaJI	CCTAGG	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	86, 149
XspI	CTAG	8 cut(s)	15, 104, 221, 248, 305, 501, 633, 683
ZraI	GACGTC	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.