Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

42337948 .. 42356231

Gene Structure 18284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG356100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTTCAGTCTCAGGACCTTGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGCAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATATCTTACTTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTCAGATGGTGCAAACAAACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGTTGGGGCTTCTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGCTGTTTTCTCTTTTATTCGTAAAATGGAACTGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCATTGAGAATTTACTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCCTGGAAGAAGTCCTGGTTTATGCTCAACTTGGAGGGATGATGGGGCGACTGTCTTCTCTTGAGGCTGTGACAAGTCCAGCTTCATTCCGACCGACAGCTCATGTTGCTGCATCTTATACTCCTTCAATTGAGAAGGGTCGTCCCGTCTTACAGGGACTTCTGGCAATAGATTTTCTAGCAAAAGAGGAAAGTTTTAGCGTGCTTGGTTGGGCACAAGCTATGCCTAAATTTGCTGGTGACCTTGCGAAGTATGTTCAAACTTTTCTGGAGCGAACCTATGAAAGATGCCAAACCTCATACATGGAGGCTGTTTTGGAGAAGCAGAGTTATATGCTCATTGTCAAAGATGTCGGACTTAAATTGTCTGCATGTATTGTTAGTTGTGAGATTCGTGATGACAACAAGCTTATATTGCTGGCTTCCCTCAGTGATTCATTGGAGTATGTTGCAGAGTCTATTGAAAGTTTGTCCATGGGTTTCACCAGCGTCCATGGTAAGAGTCCGTCCGCGGAATATGCAAAGTTGAGGAAGGAGTCACTAGAAAACATAAGGAAACGTGCCATCAAGGAATATTGTGCAGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

360

Amino Acids

39.38

Weight (kDa)

5.38

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1004
AciI	CCGC	2 cut(s)	1002, 1004
AcsI	RAATTY	3 cut(s)	369, 439, 722
AfaI	GTAC	1 cut(s)	85
AgsI	TTSAA	5 cut(s)	22, 160, 621, 752, 956
AjnI	CCWGG	2 cut(s)	495, 507
AluBI	AGCT	7 cut(s)	59, 409, 476, 575, 593, 713, 901
AluI	AGCT	7 cut(s)	59, 409, 476, 575, 593, 713, 901
Alw26I	GTCTC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	110
ApeKI	GCWGC	6 cut(s)	194, 239, 409, 491, 602, 1073
ApoI	RAATTY	3 cut(s)	369, 439, 722
AspS9I	GGNCC	2 cut(s)	15, 107
AsuHPI	GGTGA	3 cut(s)	393, 743, 967
AvaII	GGWCC	2 cut(s)	15, 107
BaeGI	GKGCMC	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	540
BbvI	GCAGC	5 cut(s)	181, 226, 396, 503, 589
BccI	CCATC	5 cut(s)	74, 200, 425, 529, 1064
BciT130I	CCWGG	2 cut(s)	497, 509
BciVI	GTATCC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	6 cut(s)	56, 264, 396, 446, 671, 1034
BfmI	CTRYAG	5 cut(s)	66, 132, 240, 329, 410
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	6 cut(s)	195, 240, 410, 492, 603, 1074
BlsI	GCNGC	6 cut(s)	196, 241, 411, 493, 604, 1075
Bme1390I	CCNGG	2 cut(s)	497, 509
Bme18I	GGWCC	2 cut(s)	15, 107
BmgT120I	GGNCC	2 cut(s)	15, 107
BmrFI	CCNGG	2 cut(s)	497, 509
BmsI	GCATC	4 cut(s)	216, 286, 614, 770
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	2 cut(s)	462, 782
BpuEI	CTTGAG	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	495, 966, 985, 1002
Bse1I	ACTGG	2 cut(s)	465, 479
Bse3DI	GCAATG	1 cut(s)	1083
BseBI	CCWGG	2 cut(s)	497, 509
BseDI	CCNNGG	4 cut(s)	495, 966, 985, 1002
BseGI	GGATG	2 cut(s)	46, 537
BseMI	GCAATG	1 cut(s)	1083
BseMII	CTCAG	3 cut(s)	25, 102, 934
BseNI	ACTGG	2 cut(s)	465, 479
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	5 cut(s)	181, 226, 396, 503, 589
Bsh1236I	CGCG	1 cut(s)	1004
Bsh1285I	CGRYCG	1 cut(s)	587
BsiEI	CGRYCG	1 cut(s)	587
BslFI	GGGAC	2 cut(s)	621, 663
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	621, 663
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	1 cut(s)	398
Bsp19I	CCATGG	2 cut(s)	966, 985
BspACI	CCGC	2 cut(s)	1002, 1004
BspCNI	CTCAG	3 cut(s)	24, 103, 933
BspFNI	CGCG	1 cut(s)	1004
BspMAI	CTGCAG	5 cut(s)	70, 136, 244, 333, 414
BsrDI	GCAATG	1 cut(s)	1083
BsrI	ACTGG	2 cut(s)	465, 479
BssECI	CCNNGG	4 cut(s)	495, 966, 985, 1002
BssMI	GATC	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	966, 985
Bst2UI	CCWGG	2 cut(s)	497, 509
Bst4CI	ACNGT	3 cut(s)	88, 188, 546
BstC8I	GCNNGC	3 cut(s)	393, 695, 912
BstDEI	CTNAG	3 cut(s)	11, 111, 920
BstDSI	CCRYGG	3 cut(s)	966, 985, 1002
BstEII	GGTNACC	1 cut(s)	731
BstF5I	GGATG	2 cut(s)	46, 537
BstFNI	CGCG	1 cut(s)	1004
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	398
BstMCI	CGRYCG	1 cut(s)	587
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 599, 907, 1010
BstNI	CCWGG	2 cut(s)	497, 509
BstNSI	RCATGY	1 cut(s)	867
BstPI	GGTNACC	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	495, 507
BstSFI	CTRYAG	5 cut(s)	66, 132, 240, 329, 410
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	1 cut(s)	1004
BstV1I	GCAGC	5 cut(s)	181, 226, 396, 503, 589
BstV2I	GAAGAC	1 cut(s)	540
BsuI	GTATCC	1 cut(s)	367
BtgI	CCRYGG	3 cut(s)	966, 985, 1002
BtsCI	GGATG	2 cut(s)	46, 537
BtsIMutI	CAGTG	1 cut(s)	928
Cac8I	GCNNGC	3 cut(s)	393, 695, 912
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	15, 107
Cfr42I	CCGCGG	1 cut(s)	1005
CseI	GACGC	1 cut(s)	970
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	8 cut(s)	182, 272, 349, 596, 796, 864, 967, 986
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	3 cut(s)	11, 111, 920
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
Eco130I	CCWWGG	2 cut(s)	966, 985
Eco47I	GGWCC	2 cut(s)	15, 107
Eco91I	GGTNACC	1 cut(s)	731
EcoO109I	RGGNCCY	2 cut(s)	15, 107
EcoO65I	GGTNACC	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	495, 507
EcoT14I	CCWWGG	2 cut(s)	966, 985
ErhI	CCWWGG	2 cut(s)	966, 985
FaeI	CATG	8 cut(s)	185, 275, 352, 599, 799, 867, 970, 989
FalI	AAGNNNNNCTT	2 cut(s)	559, 591
FaqI	GGGAC	2 cut(s)	621, 663
FatI	CATG	8 cut(s)	181, 271, 348, 595, 795, 863, 966, 985
Fnu4HI	GCNGC	6 cut(s)	195, 240, 410, 492, 603, 1074
FokI	GGATG	2 cut(s)	53, 544
Fsp4HI	GCNGC	6 cut(s)	195, 240, 410, 492, 603, 1074
FspBI	CTAG	6 cut(s)	56, 264, 396, 446, 671, 1034
GluI	GCNGC	6 cut(s)	195, 240, 410, 492, 603, 1074
GsuI	CTGGAG	2 cut(s)	462, 782
HgaI	GACGC	1 cut(s)	970
Hin1II	CATG	8 cut(s)	185, 275, 352, 599, 799, 867, 970, 989
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	5 cut(s)	883, 926, 947, 994, 1028
HphI	GGTGA	3 cut(s)	393, 743, 967
Hpy188I	TCNGA	3 cut(s)	205, 584, 848
Hpy188III	TCNNGA	5 cut(s)	13, 110, 554, 761, 887
HpyAV	CCTTC	5 cut(s)	57, 445, 622, 627, 1018
HpyCH4III	ACNGT	3 cut(s)	88, 188, 546
HpyCH4IV	ACGT	2 cut(s)	465, 1051
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 599, 907, 1010
HpyF3I	CTNAG	3 cut(s)	11, 111, 920
HpySE526I	ACGT	2 cut(s)	465, 1051
Hsp92II	CATG	8 cut(s)	185, 275, 352, 599, 799, 867, 970, 989
KspI	CCGCGG	1 cut(s)	1005
Kzo9I	GATC	1 cut(s)	398
LmnI	GCTCC	3 cut(s)	268, 481, 763
Lsp1109I	GCAGC	5 cut(s)	181, 226, 396, 503, 589
LweI	GCATC	4 cut(s)	216, 286, 614, 770
MaeI	CTAG	6 cut(s)	56, 264, 396, 446, 671, 1034
MaeII	ACGT	2 cut(s)	465, 1051
MaeIII	GTNAC	4 cut(s)	61, 562, 731, 1029
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	2 cut(s)	512, 540
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	6 cut(s)	246, 369, 439, 621, 722, 854
MlyI	GAGTC	3 cut(s)	956, 1003, 1037
MmeI	TCCRAC	2 cut(s)	607, 826
MnlI	CCTC	9 cut(s)	26, 327, 521, 550, 673, 793, 799, 929, 1014
MseI	TTAA	3 cut(s)	120, 249, 852
MspA1I	CMGCKG	1 cut(s)	1004
MspR9I	CCNGG	2 cut(s)	497, 509
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	2 cut(s)	497, 509
MvnI	CGCG	1 cut(s)	1004
MwoI	GCNNNNNNNGC	4 cut(s)	65, 599, 907, 1010
NcoI	CCATGG	2 cut(s)	966, 985
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	8 cut(s)	185, 275, 352, 599, 799, 867, 970, 989
NmuCI	GTSAC	4 cut(s)	61, 562, 731, 1029
NspI	RCATGY	1 cut(s)	867
PfeI	GAWTC	2 cut(s)	883, 926
PkrI	GCNGC	6 cut(s)	196, 241, 411, 493, 604, 1075
PleI	GAGTC	3 cut(s)	955, 1002, 1036
PpsI	GAGTC	3 cut(s)	955, 1002, 1036
PpuMI	RGGWCCY	2 cut(s)	15, 107
Psp5II	RGGWCCY	2 cut(s)	15, 107
Psp6I	CCWGG	2 cut(s)	495, 507
PspEI	GGTNACC	1 cut(s)	731
PspGI	CCWGG	2 cut(s)	495, 507
PspPI	GGNCC	2 cut(s)	15, 107
PspPPI	RGGWCCY	2 cut(s)	15, 107
PstI	CTGCAG	5 cut(s)	70, 136, 244, 333, 414
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SacII	CCGCGG	1 cut(s)	1005
SaqAI	TTAA	3 cut(s)	120, 249, 852
SatI	GCNGC	6 cut(s)	195, 240, 410, 492, 603, 1074
Sau3AI	GATC	1 cut(s)	398
Sau96I	GGNCC	2 cut(s)	15, 107
SbfI	CCTGCAGG	1 cut(s)	136
SchI	GAGTC	3 cut(s)	956, 1003, 1037
ScrFI	CCNGG	2 cut(s)	497, 509
SdaI	CCTGCAGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	4 cut(s)	216, 286, 614, 770
SfcI	CTRYAG	5 cut(s)	66, 132, 240, 329, 410
Sfr303I	CCGCGG	1 cut(s)	1005
SgrBI	CCGCGG	1 cut(s)	1005
SinI	GGWCC	2 cut(s)	15, 107
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse8387I	CCTGCAGG	1 cut(s)	136
Sse9I	AATT	6 cut(s)	246, 369, 439, 621, 722, 854
SsiI	CCGC	2 cut(s)	1002, 1004
SspI	AATATT	1 cut(s)	1067
SspMI	CTAG	6 cut(s)	56, 264, 396, 446, 671, 1034
StyD4I	CCNGG	2 cut(s)	495, 507
StyI	CCWWGG	2 cut(s)	966, 985
TaaI	ACNGT	3 cut(s)	88, 188, 546
TaiI	ACGT	2 cut(s)	468, 1054
TaqII	GACCGA	1 cut(s)	601
TasI	AATT	6 cut(s)	246, 369, 439, 621, 722, 854
TfiI	GAWTC	2 cut(s)	883, 926
Tru1I	TTAA	3 cut(s)	120, 249, 852
Tru9I	TTAA	3 cut(s)	120, 249, 852
TscAI	CASTG	1 cut(s)	928
TseFI	GTSAC	4 cut(s)	61, 562, 731, 1029
TseI	GCWGC	6 cut(s)	194, 239, 409, 491, 602, 1073
Tsp45I	GTSAC	4 cut(s)	61, 562, 731, 1029
TspDTI	ATGAA	5 cut(s)	39, 288, 567, 789, 918
TspGWI	ACGGA	1 cut(s)	987
TspRI	CASTG	1 cut(s)	928
VpaK11BI	GGWCC	2 cut(s)	15, 107
XapI	RAATTY	3 cut(s)	369, 439, 722
XceI	RCATGY	1 cut(s)	867
XspI	CTAG	6 cut(s)	56, 264, 396, 446, 671, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.