Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

34486891 .. 34492984

Gene Structure 6094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTCCAAAAGCCTAGTTCTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTAGTGGCCCTAGTAGCTGGCTCAAATGTGTATCTTCTTGTTGATCAGCCTTGTGCTTATACCAAACCCAAAGTCCAATCAACATCCCTCATTATTTTACTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

66

Amino Acids

7.0

Weight (kDa)

9.58

Isoelectric Point (pI)

10.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	7 - 56	2.4e-14	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	58
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	4, 100
AvaII	GGWCC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	2 cut(s)	15, 104
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 100
BmiI	GGNNCC	2 cut(s)	40, 49
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	29, 136
BspANI	GGCC	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	40, 49
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	29, 136
BstC8I	GCNNGC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	32, 139
BstMBI	GATC	2 cut(s)	29, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	4, 100
CviJI	RGCY	5 cut(s)	13, 101, 110, 114, 142
CviKI_1	RGCY	5 cut(s)	13, 101, 110, 114, 142
DpnI	GATC	2 cut(s)	31, 138
DpnII	GATC	2 cut(s)	29, 136
Eco47I	GGWCC	1 cut(s)	4
FaiI	YATR	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	136
FokI	GGATG	1 cut(s)	163
FspBI	CTAG	2 cut(s)	15, 104
HaeIII	GGCC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	29, 136
LpnPI	CCDG	3 cut(s)	21, 65, 96
MaeI	CTAG	2 cut(s)	15, 104
MalI	GATC	2 cut(s)	31, 138
MboI	GATC	2 cut(s)	29, 136
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	29, 136
NlaIV	GGNNCC	2 cut(s)	40, 49
PdmI	GAANNNNTTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	40, 49
PspPI	GGNCC	2 cut(s)	4, 100
PsuI	RGATCY	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	29, 136
Sau96I	GGNCC	2 cut(s)	4, 100
SetI	ASST	1 cut(s)	112
SgeI	CNNG	8 cut(s)	27, 48, 64, 91, 116, 123, 143, 156
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	86
SspMI	CTAG	2 cut(s)	15, 104
TasI	AATT	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	2 cut(s)	15, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.