Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

34594240 .. 34605753

Gene Structure 11514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG263200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGTGAAAAGGTTCAAACCCAAATTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAAGACAAGCCTGAGATCACTCCTAGGGAGCAAGGAGTCATTGAGTTGTCAAGTCCACTATCCAAGGGGACGCTAAATGTTCAGTCTCAGGACCTTGTGAGGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTAAATGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATACCTTACTTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTCAGATGGTGCAAACAAACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGCTGGGGCTTCTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGCTGTTTTCTCTTTTATTCGTAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCGTTGAGAATTTTCTAGAGAATGTAATACTGGACGTAGTAGAAGCTCCAGTCGGAGTAGCAGCCCTGGAAGAAGTCCTCCATGCGTGGTCCTCAGACCAGCACCCCGTCTCAGCCTATGACTTCGGCGTTCCTCTCTTCACCACCGCCGACGTCCTTTCCGCTCACCTCCGCTGCCGGGCTCTTCATCTGCCACGGACCTTATTGCTTCCACCGTGGCTCAACTGCAACTACAATCGGATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

280

Amino Acids

30.73

Weight (kDa)

5.59

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	750
AccBSI	CCGCTC	1 cut(s)	758
AciI	CCGC	4 cut(s)	494, 741, 756, 766
AcsI	RAATTY	2 cut(s)	534, 604
AcyI	GRCGYC	1 cut(s)	747
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	772
AgsI	TTSAA	2 cut(s)	16, 325
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	4 cut(s)	224, 419, 574, 641
AluI	AGCT	4 cut(s)	224, 419, 574, 641
Alw26I	GTCTC	2 cut(s)	174, 709
AlwNI	CAGNNNCTG	1 cut(s)	275
ApeKI	GCWGC	5 cut(s)	359, 404, 574, 656, 768
ApoI	RAATTY	2 cut(s)	534, 604
Asp700I	GAANNNNTTC	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	107
AspS9I	GGNCC	4 cut(s)	175, 272, 684, 792
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	5 cut(s)	16, 274, 558, 727, 752
AvaII	GGWCC	4 cut(s)	175, 272, 684, 792
AvrII	CCTAGG	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	346, 391, 561, 668, 755
BccI	CCATC	3 cut(s)	239, 365, 590
BciT130I	CCWGG	1 cut(s)	662
BciVI	GTATCC	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	174, 709
BfaI	CTAG	6 cut(s)	83, 108, 221, 429, 561, 611
BfmI	CTRYAG	3 cut(s)	297, 405, 575
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	5 cut(s)	360, 405, 575, 657, 769
BlnI	CCTAGG	1 cut(s)	107
BlsI	GCNGC	5 cut(s)	361, 406, 576, 658, 770
Bme1390I	CCNGG	2 cut(s)	662, 773
Bme18I	GGWCC	4 cut(s)	175, 272, 684, 792
BmgT120I	GGNCC	4 cut(s)	175, 272, 684, 792
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	662, 773
BmsI	GCATC	2 cut(s)	381, 451
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	747
BsaJI	CCNNGG	5 cut(s)	107, 147, 660, 788, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse1I	ACTGG	2 cut(s)	630, 644
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	5 cut(s)	107, 147, 660, 788, 809
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMII	CTCAG	5 cut(s)	87, 185, 267, 702, 720
BseNI	ACTGG	2 cut(s)	630, 644
BseXI	GCAGC	5 cut(s)	346, 391, 561, 668, 755
BseYI	CCCAGC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmAI	GTCTC	2 cut(s)	174, 709
BsmBI	CGTCTC	1 cut(s)	709
BsmFI	GGGAC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp143I	GATC	2 cut(s)	99, 563
BspACI	CCGC	4 cut(s)	494, 741, 756, 766
BspCNI	CTCAG	5 cut(s)	88, 184, 268, 701, 719
BspLI	GGNNCC	1 cut(s)	492
BspMAI	CTGCAG	3 cut(s)	301, 409, 579
BspQI	GCTCTTC	1 cut(s)	783
BsrBI	CCGCTC	1 cut(s)	758
BsrI	ACTGG	2 cut(s)	630, 644
BssECI	CCNNGG	5 cut(s)	107, 147, 660, 788, 809
BssMI	GATC	2 cut(s)	99, 563
BssNI	GRCGYC	1 cut(s)	747
BssT1I	CCWWGG	2 cut(s)	107, 147
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	3 cut(s)	253, 353, 810
Bst6I	CTCTTC	2 cut(s)	737, 783
BstACI	GRCGYC	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	5 cut(s)	96, 171, 276, 688, 706
BstDSI	CCRYGG	2 cut(s)	788, 809
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	102, 566
BstMAI	GTCTC	2 cut(s)	174, 709
BstMBI	GATC	2 cut(s)	99, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	660, 771
BstSFI	CTRYAG	3 cut(s)	297, 405, 575
BstV1I	GCAGC	5 cut(s)	346, 391, 561, 668, 755
BstV2I	GAAGAC	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	532
BtgI	CCRYGG	2 cut(s)	788, 809
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	4 cut(s)	175, 272, 684, 792
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	4 cut(s)	347, 437, 514, 677
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	5 cut(s)	96, 171, 276, 688, 706
DpnI	GATC	2 cut(s)	101, 565
DpnII	GATC	2 cut(s)	99, 563
Eam1104I	CTCTTC	2 cut(s)	737, 783
EarI	CTCTTC	2 cut(s)	737, 783
Eco130I	CCWWGG	2 cut(s)	107, 147
Eco24I	GRGCYC	1 cut(s)	778
Eco47I	GGWCC	4 cut(s)	175, 272, 684, 792
EcoO109I	RGGNCCY	2 cut(s)	175, 272
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	2 cut(s)	107, 147
EcoT38I	GRGCYC	1 cut(s)	778
ErhI	CCWWGG	2 cut(s)	107, 147
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	4 cut(s)	350, 440, 517, 680
FaiI	YATR	7 cut(s)	348, 438, 515, 543, 678, 714, 841
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	4 cut(s)	346, 436, 513, 676
Fnu4HI	GCNGC	5 cut(s)	360, 405, 575, 657, 769
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	5 cut(s)	360, 405, 575, 657, 769
FspBI	CTAG	6 cut(s)	83, 108, 221, 429, 561, 611
GluI	GCNGC	5 cut(s)	360, 405, 575, 657, 769
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	627
HapII	CCGG	1 cut(s)	772
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	747
Hin1II	CATG	4 cut(s)	350, 440, 517, 680
HinfI	GANTC	3 cut(s)	44, 120, 835
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	5 cut(s)	16, 274, 558, 727, 752
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	4 cut(s)	370, 650, 691, 834
Hpy188III	TCNNGA	4 cut(s)	83, 173, 275, 611
Hpy8I	GTNNAC	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	253, 353, 810
HpyCH4IV	ACGT	2 cut(s)	630, 747
HpyCH4V	TGCA	7 cut(s)	32, 233, 299, 377, 407, 577, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	5 cut(s)	96, 171, 276, 688, 706
HpySE526I	ACGT	2 cut(s)	630, 747
Hsp92I	GRCGYC	1 cut(s)	747
Hsp92II	CATG	4 cut(s)	350, 440, 517, 680
Kzo9I	GATC	2 cut(s)	99, 563
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	3 cut(s)	112, 433, 646
Lsp1109I	GCAGC	5 cut(s)	346, 391, 561, 668, 755
LweI	GCATC	2 cut(s)	381, 451
MaeI	CTAG	6 cut(s)	83, 108, 221, 429, 561, 611
MaeII	ACGT	2 cut(s)	630, 747
MalI	GATC	2 cut(s)	101, 565
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	2 cut(s)	99, 563
MboII	GAAGA	4 cut(s)	98, 677, 724, 770
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	4 cut(s)	23, 411, 534, 604
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	8 cut(s)	61, 177, 191, 492, 683, 697, 738, 773
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	4 cut(s)	54, 63, 285, 414
MspA1I	CMGCKG	1 cut(s)	768
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	2 cut(s)	662, 773
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	773
NdeII	GATC	2 cut(s)	99, 563
NlaIII	CATG	4 cut(s)	350, 440, 517, 680
NlaIV	GGNNCC	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	44, 835
PkrI	GCNGC	5 cut(s)	361, 406, 576, 658, 770
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	2 cut(s)	175, 272
Psp5II	RGGWCCY	2 cut(s)	175, 272
Psp6I	CCWGG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	4 cut(s)	175, 272, 684, 792
PspPPI	RGGWCCY	2 cut(s)	175, 272
PstI	CTGCAG	3 cut(s)	301, 409, 579
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	4 cut(s)	54, 63, 285, 414
SatI	GCNGC	5 cut(s)	360, 405, 575, 657, 769
Sau3AI	GATC	2 cut(s)	99, 563
Sau96I	GGNCC	4 cut(s)	175, 272, 684, 792
SbfI	CCTGCAGG	1 cut(s)	301
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	662, 773
SdaI	CCTGCAGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	778
SfaNI	GCATC	2 cut(s)	381, 451
SfcI	CTRYAG	3 cut(s)	297, 405, 575
SinI	GGWCC	4 cut(s)	175, 272, 684, 792
Sse8387I	CCTGCAGG	1 cut(s)	301
Sse9I	AATT	4 cut(s)	23, 411, 534, 604
SsiI	CCGC	4 cut(s)	494, 741, 756, 766
SspMI	CTAG	6 cut(s)	83, 108, 221, 429, 561, 611
StyD4I	CCNGG	2 cut(s)	660, 771
StyI	CCWWGG	2 cut(s)	107, 147
TaaI	ACNGT	3 cut(s)	253, 353, 810
TaiI	ACGT	2 cut(s)	633, 750
TasI	AATT	4 cut(s)	23, 411, 534, 604
TfiI	GAWTC	2 cut(s)	44, 835
Tru1I	TTAA	4 cut(s)	54, 63, 285, 414
Tru9I	TTAA	4 cut(s)	54, 63, 285, 414
TseI	GCWGC	5 cut(s)	359, 404, 574, 656, 768
TspDTI	ATGAA	5 cut(s)	57, 72, 204, 453, 770
TspGWI	ACGGA	1 cut(s)	805
VpaK11BI	GGWCC	4 cut(s)	175, 272, 684, 792
XapI	RAATTY	2 cut(s)	534, 604
XbaI	TCTAGA	2 cut(s)	82, 610
XmaJI	CCTAGG	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	6 cut(s)	83, 108, 221, 429, 561, 611
ZraI	GACGTC	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.