Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

50509409 .. 50520496

Gene Structure 11088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG372200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTGTCAGAGAAGGAGAAAAAGATGTGCATAGACTGATTCATAAAAATAGCAATAAATTAACCAATAACGGGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATATCTTAATTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTCAGATGGTGCAAACAAACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGCTTGGGCTTCTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGTTGTTTTCTCTTTTATTCGTAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCATTGAGAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCCTGGAAGAAGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

188

Amino Acids

20.61

Weight (kDa)

5.43

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	383
AcsI	RAATTY	2 cut(s)	423, 493
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	4 cut(s)	113, 308, 463, 530
AluI	AGCT	4 cut(s)	113, 308, 463, 530
AlwNI	CAGNNNCTG	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	248, 293, 463, 545
ApoI	RAATTY	2 cut(s)	423, 493
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	163, 447
AvaII	GGWCC	1 cut(s)	161
BbvI	GCAGC	4 cut(s)	235, 280, 450, 557
BccI	CCATC	3 cut(s)	128, 254, 479
BciT130I	CCWGG	1 cut(s)	551
BciVI	GTATCC	1 cut(s)	421
BfaI	CTAG	4 cut(s)	110, 318, 450, 500
BfmI	CTRYAG	4 cut(s)	120, 186, 294, 464
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	4 cut(s)	249, 294, 464, 546
BlsI	GCNGC	4 cut(s)	250, 295, 465, 547
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	519, 533
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	519, 533
BseXI	GCAGC	4 cut(s)	235, 280, 450, 557
BslI	CCNNNNNNNGG	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	452
BspACI	CCGC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	381
BspMAI	CTGCAG	4 cut(s)	124, 190, 298, 468
BsrI	ACTGG	2 cut(s)	519, 533
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	142, 242
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	4 cut(s)	120, 186, 294, 464
BstV1I	GCAGC	4 cut(s)	235, 280, 450, 557
BsuI	GTATCC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	447
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	3 cut(s)	236, 326, 403
CviJI	RGCY	8 cut(s)	91, 113, 293, 308, 314, 463, 530, 548
CviKI_1	RGCY	8 cut(s)	91, 113, 293, 308, 314, 463, 530, 548
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	239, 329, 406
FaiI	YATR	6 cut(s)	33, 45, 237, 327, 404, 432
FatI	CATG	3 cut(s)	235, 325, 402
Fnu4HI	GCNGC	4 cut(s)	249, 294, 464, 546
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	4 cut(s)	249, 294, 464, 546
FspBI	CTAG	4 cut(s)	110, 318, 450, 500
GluI	GCNGC	4 cut(s)	249, 294, 464, 546
GsuI	CTGGAG	1 cut(s)	516
Hin1II	CATG	3 cut(s)	239, 329, 406
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	2 cut(s)	163, 447
Hpy188I	TCNGA	2 cut(s)	11, 259
Hpy188III	TCNNGA	2 cut(s)	164, 500
HpyAV	CCTTC	3 cut(s)	8, 111, 499
HpyCH4III	ACNGT	2 cut(s)	142, 242
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	6 cut(s)	31, 122, 188, 266, 296, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	239, 329, 406
Kzo9I	GATC	1 cut(s)	452
LmnI	GCTCC	2 cut(s)	322, 535
Lsp1109I	GCAGC	4 cut(s)	235, 280, 450, 557
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	4 cut(s)	110, 318, 450, 500
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	1 cut(s)	566
MluCI	AATT	5 cut(s)	59, 202, 300, 423, 493
MnlI	CCTC	2 cut(s)	80, 381
MseI	TTAA	4 cut(s)	62, 174, 201, 303
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	452
NlaIII	CATG	3 cut(s)	239, 329, 406
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	250, 295, 465, 547
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PstI	CTGCAG	4 cut(s)	124, 190, 298, 468
PstNI	CAGNNNCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	62, 174, 201, 303
SatI	GCNGC	4 cut(s)	249, 294, 464, 546
Sau3AI	GATC	1 cut(s)	452
Sau96I	GGNCC	1 cut(s)	161
SbfI	CCTGCAGG	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	551
SdaI	CCTGCAGG	1 cut(s)	190
SetI	ASST	8 cut(s)	115, 163, 310, 465, 480, 510, 522, 532
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	4 cut(s)	120, 186, 294, 464
SinI	GGWCC	1 cut(s)	161
Sse8387I	CCTGCAGG	1 cut(s)	190
Sse9I	AATT	5 cut(s)	59, 202, 300, 423, 493
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	4 cut(s)	110, 318, 450, 500
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	142, 242
TaiI	ACGT	1 cut(s)	522
TasI	AATT	5 cut(s)	59, 202, 300, 423, 493
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	4 cut(s)	62, 174, 201, 303
Tru9I	TTAA	4 cut(s)	62, 174, 201, 303
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	248, 293, 463, 545
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	32, 93, 342
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	423, 493
XbaI	TCTAGA	1 cut(s)	499
XspI	CTAG	4 cut(s)	110, 318, 450, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.