Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

55020419 .. 55021831

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG351000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGACATTGGACATAGTTGCAGAGAACCCCGAAAAATTCATAGTTGTGGCCCTAGCAGCTGGCTCAAACGTCACTCTTCTTGTCGATCAGGTGAAGAGGTTCAAACCCAAACTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAAGACAAGCCTGAGATCATTCCTGGGGAGCAAGGAGTCATTGAGGTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

74

Amino Acids

8.0

Weight (kDa)

4.67

Isoelectric Point (pI)

20.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	2 - 74	9.6e-17	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	103
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	48, 219
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	195
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	4 cut(s)	53, 113, 170, 223
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	50, 221
BsnI	GGCC	2 cut(s)	50, 221
Bsp143I	GATC	2 cut(s)	85, 186
BspANI	GGCC	2 cut(s)	50, 221
BspCNI	CTCAG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	2 cut(s)	85, 186
Bst2UI	CCWGG	1 cut(s)	195
Bst6I	CTCTTC	2 cut(s)	81, 89
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	88, 189
BstMBI	GATC	2 cut(s)	85, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	50, 221
Cac8I	GCNNGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	49
CviJI	RGCY	6 cut(s)	50, 59, 63, 158, 181, 221
CviKI_1	RGCY	6 cut(s)	50, 59, 63, 158, 181, 221
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	87, 188
DpnII	GATC	2 cut(s)	85, 186
Eam1104I	CTCTTC	2 cut(s)	81, 89
EarI	CTCTTC	2 cut(s)	81, 89
EcoRII	CCWGG	1 cut(s)	193
FaiI	YATR	2 cut(s)	14, 41
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	4 cut(s)	53, 113, 170, 223
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	50, 221
HinfI	GANTC	2 cut(s)	131, 207
HphI	GGTGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	20, 119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	85, 186
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	45, 74, 150, 180, 195, 207
Lsp1109I	GCAGC	1 cut(s)	68
MaeI	CTAG	4 cut(s)	53, 113, 170, 223
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	87, 188
MboI	GATC	2 cut(s)	85, 186
MboII	GAAGA	3 cut(s)	68, 106, 185
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	3 cut(s)	90, 148, 208
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	141, 150
MslI	CAYNNNNRTG	2 cut(s)	44, 215
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	2 cut(s)	85, 186
NmuCI	GTSAC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	2 cut(s)	44, 215
SaqAI	TTAA	2 cut(s)	141, 150
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	85, 186
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	5 cut(s)	61, 72, 93, 101, 219
SmiMI	CAYNNNNRTG	2 cut(s)	44, 215
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	1 cut(s)	35
SspMI	CTAG	4 cut(s)	53, 113, 170, 223
StyD4I	CCNGG	1 cut(s)	193
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	141, 150
Tru9I	TTAA	2 cut(s)	141, 150
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	28, 144, 159
XapI	RAATTY	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	4 cut(s)	53, 113, 170, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.