Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Reverse (-)

32331394 .. 32333570

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG271400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTCCAAAAGCCTAGTTCTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTAACTCTTCTTGTTGATCAGGTGAAAAGGTTCAAACCGAAATTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAGAAGACAAGCCTGAGATCACTCCTAGGGAGCAAGGAGTCATTGAGGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTAGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATATCTTACTTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTCAGATGGTGCAAACAGACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGCTGGGGCTTCTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGTTGTTTTCTCTTTTATTCGTAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCGTTGAGAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCCTGGAAGAAGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

253

Amino Acids

27.27

Weight (kDa)

6.22

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	8 - 85	8.5e-22	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	86, 618, 688
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	154, 409
AjnI	CCWGG	1 cut(s)	744
AluBI	AGCT	5 cut(s)	110, 308, 503, 658, 725
AluI	AGCT	5 cut(s)	110, 308, 503, 658, 725
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	4 cut(s)	443, 488, 658, 740
ApoI	RAATTY	3 cut(s)	86, 618, 688
Asp700I	GAANNNNTTC	2 cut(s)	86, 149
AspA2I	CCTAGG	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	4, 100, 356
AsuHPI	GGTGA	2 cut(s)	154, 642
AvaII	GGWCC	2 cut(s)	4, 356
AvrII	CCTAGG	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	4 cut(s)	430, 475, 645, 752
BccI	CCATC	3 cut(s)	323, 449, 674
BciT130I	CCWGG	1 cut(s)	746
BciVI	GTATCC	1 cut(s)	616
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	9 cut(s)	15, 104, 221, 248, 305, 344, 513, 645, 695
BfmI	CTRYAG	4 cut(s)	315, 381, 489, 659
BfuI	GTATCC	1 cut(s)	616
BisI	GCNGC	4 cut(s)	444, 489, 659, 741
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	4 cut(s)	445, 490, 660, 742
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	4, 356
BmgT120I	GGNCC	3 cut(s)	4, 100, 356
BmiI	GGNNCC	3 cut(s)	40, 49, 576
BmrFI	CCNGG	1 cut(s)	746
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	711
BsaJI	CCNNGG	2 cut(s)	247, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	40, 714, 728
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	2 cut(s)	247, 744
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	227, 351
BseNI	ACTGG	3 cut(s)	40, 714, 728
BseXI	GCAGC	4 cut(s)	430, 475, 645, 752
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	29, 136, 239, 647
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	228, 352
BspLI	GGNNCC	3 cut(s)	40, 49, 576
BspMAI	CTGCAG	4 cut(s)	319, 385, 493, 663
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	40, 714, 728
BssECI	CCNNGG	2 cut(s)	247, 744
BssMI	GATC	4 cut(s)	29, 136, 239, 647
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	2 cut(s)	337, 437
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	112, 642
BstDEI	CTNAG	2 cut(s)	236, 360
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	32, 139, 242, 650
BstMBI	GATC	4 cut(s)	29, 136, 239, 647
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 314
BstNI	CCWGG	1 cut(s)	746
BstSCI	CCNGG	1 cut(s)	744
BstSFI	CTRYAG	4 cut(s)	315, 381, 489, 659
BstV1I	GCAGC	4 cut(s)	430, 475, 645, 752
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	112, 642
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	4, 100, 356
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	3 cut(s)	431, 521, 598
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	236, 360
DpnI	GATC	4 cut(s)	31, 138, 241, 649
DpnII	GATC	4 cut(s)	29, 136, 239, 647
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	4, 356
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	3 cut(s)	434, 524, 601
FaiI	YATR	4 cut(s)	432, 522, 599, 627
FatI	CATG	3 cut(s)	430, 520, 597
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	444, 489, 659, 741
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	4 cut(s)	444, 489, 659, 741
FspBI	CTAG	9 cut(s)	15, 104, 221, 248, 305, 344, 513, 645, 695
GluI	GCNGC	4 cut(s)	444, 489, 659, 741
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	434, 524, 601
HinfI	GANTC	2 cut(s)	182, 260
HphI	GGTGA	2 cut(s)	154, 642
Hpy188I	TCNGA	2 cut(s)	92, 454
Hpy188III	TCNNGA	3 cut(s)	221, 359, 695
HpyAV	CCTTC	2 cut(s)	306, 694
HpyCH4III	ACNGT	2 cut(s)	337, 437
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	7 cut(s)	71, 170, 317, 383, 461, 491, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 314
HpyF3I	CTNAG	2 cut(s)	236, 360
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	3 cut(s)	434, 524, 601
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	29, 136, 239, 647
LmnI	GCTCC	3 cut(s)	252, 517, 730
Lsp1109I	GCAGC	4 cut(s)	430, 475, 645, 752
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	9 cut(s)	15, 104, 221, 248, 305, 344, 513, 645, 695
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	2 cut(s)	121, 310
MalI	GATC	4 cut(s)	31, 138, 241, 649
MboI	GATC	4 cut(s)	29, 136, 239, 647
MboII	GAAGA	3 cut(s)	119, 238, 761
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	5 cut(s)	86, 161, 495, 618, 688
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	199, 261, 275, 576
MroXI	GAANNNNTTC	2 cut(s)	86, 149
MseI	TTAA	4 cut(s)	192, 201, 369, 498
MspR9I	CCNGG	1 cut(s)	746
MvaI	CCWGG	1 cut(s)	746
MwoI	GCNNNNNNNGC	2 cut(s)	107, 314
NdeII	GATC	4 cut(s)	29, 136, 239, 647
NlaIII	CATG	3 cut(s)	434, 524, 601
NlaIV	GGNNCC	3 cut(s)	40, 49, 576
NmuCI	GTSAC	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	86, 149
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	445, 490, 660, 742
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	3 cut(s)	40, 49, 576
PspPI	GGNCC	3 cut(s)	4, 100, 356
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	4 cut(s)	319, 385, 493, 663
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	192, 201, 369, 498
SatI	GCNGC	4 cut(s)	444, 489, 659, 741
Sau3AI	GATC	4 cut(s)	29, 136, 239, 647
Sau96I	GGNCC	3 cut(s)	4, 100, 356
SbfI	CCTGCAGG	1 cut(s)	385
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	746
SdaI	CCTGCAGG	1 cut(s)	385
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	4 cut(s)	315, 381, 489, 659
SinI	GGWCC	2 cut(s)	4, 356
Sse8387I	CCTGCAGG	1 cut(s)	385
Sse9I	AATT	5 cut(s)	86, 161, 495, 618, 688
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	9 cut(s)	15, 104, 221, 248, 305, 344, 513, 645, 695
StyD4I	CCNGG	1 cut(s)	744
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	337, 437
TaiI	ACGT	1 cut(s)	717
TasI	AATT	5 cut(s)	86, 161, 495, 618, 688
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	4 cut(s)	192, 201, 369, 498
Tru9I	TTAA	4 cut(s)	192, 201, 369, 498
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	4 cut(s)	443, 488, 658, 740
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	195, 210, 288, 537
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	4, 356
XapI	RAATTY	3 cut(s)	86, 618, 688
XbaI	TCTAGA	2 cut(s)	220, 694
XmaJI	CCTAGG	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	86, 149
XspI	CTAG	9 cut(s)	15, 104, 221, 248, 305, 344, 513, 645, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.