Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335897.1

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 804

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

gttctggctgcagtaattaaagctggggcttctagggagcatgaaatacttgctgaaataagagatgctgttttctcttttattcgtaaaatggagccgcagagggtaatggacaccatgcttgtatcccgtgttagaattttgtatattagatctttgcttgctagatcaccagagctgcagtccatcaaggtttctcctgttgagaattttctagagaaggctaatactggacgtagtagaagctccagtcggggtagcagccctggaagaactcctgtgagctatgttgatgtgcaggtccaaggtttcaaagtgaatctaaagccagaaaagaagtccaagttctcatctgttgtatcaaagatacgcggacttgatcaggtagctcctataaactgtggtctgtctctctctctctccttcctggctttggaatttggatataatcatgataataaagcaggagatacaaaagagaattcttccaacacaggcagaagccagaccacagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

172

Amino Acids

18.96

Weight (kDa)

9.94

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccII	CGCG	1 cut(s)	372
AciI	CCGC	2 cut(s)	98, 372
AcsI	RAATTY	4 cut(s)	138, 208, 437, 481
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	265, 426
AluBI	AGCT	5 cut(s)	23, 178, 246, 285, 389
AluI	AGCT	5 cut(s)	23, 178, 246, 285, 389
Alw26I	GTCTC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	8, 178, 261
ApoI	RAATTY	4 cut(s)	138, 208, 437, 481
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	165, 273
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	267, 428
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	3 cut(s)	33, 165, 215
BfmI	CTRYAG	2 cut(s)	9, 179
BfuAI	ACCTGC	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	4 cut(s)	9, 98, 179, 262
BlsI	GCNGC	4 cut(s)	10, 99, 180, 263
Bme1390I	CCNGG	2 cut(s)	267, 428
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	267, 428
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	265, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	235, 249
BseBI	CCWGG	2 cut(s)	267, 428
BseDI	CCNNGG	2 cut(s)	265, 304
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseNI	ACTGG	2 cut(s)	235, 249
BseXI	GCAGC	2 cut(s)	165, 273
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	152, 167, 379
BspACI	CCGC	2 cut(s)	98, 372
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	2 cut(s)	13, 183
BspMI	ACCTGC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	235, 249
BssECI	CCNNGG	2 cut(s)	265, 304
BssMI	GATC	3 cut(s)	152, 167, 379
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	267, 428
Bst4CI	ACNGT	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	3 cut(s)	155, 170, 382
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	3 cut(s)	152, 167, 379
BstNI	CCWGG	2 cut(s)	267, 428
BstSCI	CCNGG	2 cut(s)	265, 426
BstSFI	CTRYAG	2 cut(s)	9, 179
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	165, 273
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	162
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	301
CviAII	CATG	3 cut(s)	41, 118, 452
DpnI	GATC	3 cut(s)	154, 169, 381
DpnII	GATC	3 cut(s)	152, 167, 379
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	265, 426
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	44, 121, 455
FaiI	YATR	7 cut(s)	42, 119, 147, 288, 395, 447, 453
FatI	CATG	3 cut(s)	40, 117, 451
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	9, 98, 179, 262
Fsp4HI	GCNGC	4 cut(s)	9, 98, 179, 262
FspBI	CTAG	3 cut(s)	33, 165, 215
GluI	GCNGC	4 cut(s)	9, 98, 179, 262
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	232
Hin1II	CATG	3 cut(s)	44, 121, 455
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	215, 452
HpyAV	CCTTC	2 cut(s)	214, 433
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	11, 181, 298
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	3 cut(s)	44, 121, 455
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	152, 167, 379
LmnI	GCTCC	4 cut(s)	37, 94, 251, 394
Lsp1109I	GCAGC	2 cut(s)	165, 273
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	3 cut(s)	33, 165, 215
MaeII	ACGT	1 cut(s)	235
MalI	GATC	3 cut(s)	154, 169, 381
MboI	GATC	3 cut(s)	152, 167, 379
MboII	GAAGA	2 cut(s)	282, 477
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	5 cut(s)	15, 138, 208, 437, 481
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	267, 428
MvaI	CCWGG	2 cut(s)	267, 428
MvnI	CGCG	1 cut(s)	372
NdeII	GATC	3 cut(s)	152, 167, 379
NlaIII	CATG	3 cut(s)	44, 121, 455
NlaIV	GGNNCC	1 cut(s)	96
PagI	TCATGA	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	10, 99, 180, 263
Psp6I	CCWGG	2 cut(s)	265, 426
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	265, 426
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	13, 183
PsuI	RGATCY	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	4 cut(s)	9, 98, 179, 262
Sau3AI	GATC	3 cut(s)	152, 167, 379
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	267, 428
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	2 cut(s)	9, 179
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	5 cut(s)	15, 138, 208, 437, 481
SsiI	CCGC	2 cut(s)	98, 372
SspMI	CTAG	3 cut(s)	33, 165, 215
StyD4I	CCNGG	2 cut(s)	265, 426
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	238
TasI	AATT	5 cut(s)	15, 138, 208, 437, 481
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	3 cut(s)	8, 178, 261
TspDTI	ATGAA	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	4 cut(s)	138, 208, 437, 481
XbaI	TCTAGA	1 cut(s)	214
XspI	CTAG	3 cut(s)	33, 165, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.