Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Reverse (-)

52020703 .. 52024208

Gene Structure 3506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTCCAAAAGCCTAGTTTTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGACATTGGACATTGTTGCAAAGAACCCGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGGTGAAAAGGTTCAAACCGAAATTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAGAAGACAAGCCTAAGATCACTCCTAGGGAGCAAGGAGTCATTGAGTTGTCAAGTCCACTATCCAAGGGGCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

99

Amino Acids

10.75

Weight (kDa)

10.24

Isoelectric Point (pI)

19.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	8 - 86	6.7e-23	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	2 cut(s)	99, 292
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	2 cut(s)	86, 149
AspA2I	CCTAGG	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	4, 100, 292
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	4 cut(s)	15, 104, 221, 248
BisI	GCNGC	1 cut(s)	295
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 100, 292
BmiI	GGNNCC	3 cut(s)	40, 49, 293
BpiI	GAAGAC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	247, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	247, 287
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	101, 294
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	2 cut(s)	101, 294
Bsp143I	GATC	3 cut(s)	29, 136, 239
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	101, 294
BspLI	GGNNCC	3 cut(s)	40, 49, 293
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	247, 287
BssMI	GATC	3 cut(s)	29, 136, 239
BssT1I	CCWWGG	2 cut(s)	247, 287
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	236
BstKTI	GATC	3 cut(s)	32, 139, 242
BstMBI	GATC	3 cut(s)	29, 136, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	101, 294
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	4, 100, 292
CviJI	RGCY	7 cut(s)	13, 101, 110, 114, 209, 234, 294
CviKI_1	RGCY	7 cut(s)	13, 101, 110, 114, 209, 234, 294
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	3 cut(s)	31, 138, 241
DpnII	GATC	3 cut(s)	29, 136, 239
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	247, 287
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	247, 287
ErhI	CCWWGG	2 cut(s)	247, 287
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	4 cut(s)	15, 104, 221, 248
GluI	GCNGC	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	101, 294
HinfI	GANTC	3 cut(s)	124, 182, 260
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	71, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	29, 136, 239
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	5 cut(s)	21, 65, 96, 125, 201
MaeI	CTAG	4 cut(s)	15, 104, 221, 248
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	31, 138, 241
MboI	GATC	3 cut(s)	29, 136, 239
MboII	GAAGA	2 cut(s)	119, 238
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	2 cut(s)	86, 161
MlyI	GAGTC	2 cut(s)	118, 269
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	199
MroXI	GAANNNNTTC	2 cut(s)	86, 149
MseI	TTAA	2 cut(s)	192, 201
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	3 cut(s)	29, 136, 239
NlaIV	GGNNCC	3 cut(s)	40, 49, 293
NmuCI	GTSAC	1 cut(s)	121
PdmI	GAANNNNTTC	2 cut(s)	86, 149
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	2 cut(s)	118, 268
PpsI	GAGTC	2 cut(s)	118, 268
PspN4I	GGNNCC	3 cut(s)	40, 49, 293
PspPI	GGNCC	3 cut(s)	4, 100, 292
PsuI	RGATCY	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	192, 201
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	3 cut(s)	29, 136, 239
Sau96I	GGNCC	3 cut(s)	4, 100, 292
SchI	GAGTC	2 cut(s)	118, 269
SetI	ASST	3 cut(s)	112, 144, 152
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	86, 161
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	4 cut(s)	15, 104, 221, 248
StyI	CCWWGG	2 cut(s)	247, 287
TasI	AATT	2 cut(s)	86, 161
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	192, 201
Tru9I	TTAA	2 cut(s)	192, 201
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	195, 210
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	86, 149
XspI	CTAG	4 cut(s)	15, 104, 221, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.