Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Reverse (-)

49054340 .. 49057522

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTCCAAAAGCCTAGTTCTGTTGTTGGATCTACTGGTTCCATTGGAACCCAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGGTGAAAAGGTTCAAACCCAAATTAGTTGCAGTTCGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAAGACAAGCCTGAGATCACTCCTAGGGAGCAAGGAGTCATTGAGTTGTCAAGTCCACTATCCAAGGGGCCGCTAAATGTTCAGTCTCAGGACCTTGTGAGGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAATTACCCCTGCAGGAGAATATCTTACTTCTGCCTTGAATGACTTTGACCCTGAACAACATGACAGTCTTGCTACCATTTCAGATGGTGCAAACAAACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGCTGGGGCTTCTAGGGAGCATGAAATGCTTGCTGAAATAAGAGATGCTGTTTTCTCTTTTATTCGTAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAATCCATCAAGGTTTCTCCCGTTGAGAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCCTGGAAGAAGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

271

Amino Acids

29.23

Weight (kDa)

5.31

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	8 - 91	3.9e-23	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	2 cut(s)	293, 632
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	86, 672, 742
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	154, 463
AjnI	CCWGG	1 cut(s)	798
AluBI	AGCT	5 cut(s)	110, 362, 557, 712, 779
AluI	AGCT	5 cut(s)	110, 362, 557, 712, 779
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	99, 290
ApeKI	GCWGC	3 cut(s)	542, 712, 794
ApoI	RAATTY	3 cut(s)	86, 672, 742
Asp700I	GAANNNNTTC	2 cut(s)	86, 149
AspA2I	CCTAGG	1 cut(s)	245
AspS9I	GGNCC	5 cut(s)	4, 100, 290, 313, 410
AsuHPI	GGTGA	3 cut(s)	154, 412, 696
AsuII	TTCGAA	1 cut(s)	175
AvaII	GGWCC	3 cut(s)	4, 313, 410
AvrII	CCTAGG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	529, 699, 806
BccI	CCATC	3 cut(s)	377, 503, 728
BciT130I	CCWGG	1 cut(s)	800
BciVI	GTATCC	1 cut(s)	670
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	8 cut(s)	15, 104, 221, 246, 359, 567, 699, 749
BfmI	CTRYAG	3 cut(s)	369, 435, 543
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	4 cut(s)	293, 543, 713, 795
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	4 cut(s)	294, 544, 714, 796
Bme1390I	CCNGG	1 cut(s)	800
Bme18I	GGWCC	3 cut(s)	4, 313, 410
BmgT120I	GGNCC	5 cut(s)	4, 100, 290, 313, 410
BmiI	GGNNCC	4 cut(s)	40, 49, 291, 630
BmrFI	CCNGG	1 cut(s)	800
BmsI	GCATC	2 cut(s)	519, 589
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	765
Bpu14I	TTCGAA	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	245, 285, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	40, 768, 782
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	3 cut(s)	245, 285, 798
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	225, 323, 405
BseNI	ACTGG	3 cut(s)	40, 768, 782
BseXI	GCAGC	3 cut(s)	529, 699, 806
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	2 cut(s)	101, 292
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	101, 292
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	29, 136, 237, 701
BspACI	CCGC	2 cut(s)	293, 632
BspANI	GGCC	2 cut(s)	101, 292
BspCNI	CTCAG	3 cut(s)	226, 322, 406
BspLI	GGNNCC	4 cut(s)	40, 49, 291, 630
BspMAI	CTGCAG	3 cut(s)	373, 439, 547
BspPI	GGATC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	40, 768, 782
BssECI	CCNNGG	3 cut(s)	245, 285, 798
BssMI	GATC	4 cut(s)	29, 136, 237, 701
BssT1I	CCWWGG	2 cut(s)	245, 285
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	2 cut(s)	391, 491
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	112, 585, 696
BstDEI	CTNAG	3 cut(s)	234, 309, 414
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	4 cut(s)	32, 139, 240, 704
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	4 cut(s)	29, 136, 237, 701
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 368, 580
BstNI	CCWGG	1 cut(s)	800
BstSCI	CCNGG	1 cut(s)	798
BstSFI	CTRYAG	3 cut(s)	369, 435, 543
BstV1I	GCAGC	3 cut(s)	529, 699, 806
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	2 cut(s)	101, 292
BtsCI	GGATG	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	112, 585, 696
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	5 cut(s)	4, 100, 290, 313, 410
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	3 cut(s)	485, 575, 652
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	3 cut(s)	234, 309, 414
DpnI	GATC	4 cut(s)	31, 138, 239, 703
DpnII	GATC	4 cut(s)	29, 136, 237, 701
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	245, 285
Eco47I	GGWCC	3 cut(s)	4, 313, 410
EcoO109I	RGGNCCY	2 cut(s)	313, 410
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	2 cut(s)	245, 285
ErhI	CCWWGG	2 cut(s)	245, 285
FaeI	CATG	3 cut(s)	488, 578, 655
FaiI	YATR	4 cut(s)	486, 576, 653, 681
FatI	CATG	3 cut(s)	484, 574, 651
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	293, 543, 713, 795
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	4 cut(s)	293, 543, 713, 795
FspBI	CTAG	8 cut(s)	15, 104, 221, 246, 359, 567, 699, 749
GluI	GCNGC	4 cut(s)	293, 543, 713, 795
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	2 cut(s)	101, 292
Hin1II	CATG	3 cut(s)	488, 578, 655
HinfI	GANTC	3 cut(s)	124, 182, 258
HphI	GGTGA	3 cut(s)	154, 412, 696
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	92, 508
Hpy188III	TCNNGA	4 cut(s)	221, 311, 413, 749
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	360, 748
HpyCH4III	ACNGT	2 cut(s)	391, 491
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	7 cut(s)	71, 170, 371, 437, 515, 545, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 368, 580
HpyF3I	CTNAG	3 cut(s)	234, 309, 414
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	3 cut(s)	488, 578, 655
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	29, 136, 237, 701
LmnI	GCTCC	3 cut(s)	250, 571, 784
Lsp1109I	GCAGC	3 cut(s)	529, 699, 806
LweI	GCATC	2 cut(s)	519, 589
MaeI	CTAG	8 cut(s)	15, 104, 221, 246, 359, 567, 699, 749
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	121, 364
MalI	GATC	4 cut(s)	31, 138, 239, 703
MboI	GATC	4 cut(s)	29, 136, 237, 701
MboII	GAAGA	3 cut(s)	119, 236, 815
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	6 cut(s)	86, 161, 426, 549, 672, 742
MlyI	GAGTC	2 cut(s)	118, 267
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	199, 315, 329, 630
MroXI	GAANNNNTTC	2 cut(s)	86, 149
MseI	TTAA	4 cut(s)	192, 201, 423, 552
MspR9I	CCNGG	1 cut(s)	800
MvaI	CCWGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	3 cut(s)	107, 368, 580
NdeII	GATC	4 cut(s)	29, 136, 237, 701
NlaIII	CATG	3 cut(s)	488, 578, 655
NlaIV	GGNNCC	4 cut(s)	40, 49, 291, 630
NmuCI	GTSAC	2 cut(s)	121, 364
NspV	TTCGAA	1 cut(s)	175
PdmI	GAANNNNTTC	2 cut(s)	86, 149
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	294, 544, 714, 796
PleI	GAGTC	2 cut(s)	118, 266
PpsI	GAGTC	2 cut(s)	118, 266
PpuMI	RGGWCCY	2 cut(s)	313, 410
Psp5II	RGGWCCY	2 cut(s)	313, 410
Psp6I	CCWGG	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	798
PspN4I	GGNNCC	4 cut(s)	40, 49, 291, 630
PspPI	GGNCC	5 cut(s)	4, 100, 290, 313, 410
PspPPI	RGGWCCY	2 cut(s)	313, 410
PstI	CTGCAG	3 cut(s)	373, 439, 547
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	192, 201, 423, 552
SatI	GCNGC	4 cut(s)	293, 543, 713, 795
Sau3AI	GATC	4 cut(s)	29, 136, 237, 701
Sau96I	GGNCC	5 cut(s)	4, 100, 290, 313, 410
SbfI	CCTGCAGG	1 cut(s)	439
SchI	GAGTC	2 cut(s)	118, 267
ScrFI	CCNGG	1 cut(s)	800
SdaI	CCTGCAGG	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	519, 589
SfcI	CTRYAG	3 cut(s)	369, 435, 543
SfuI	TTCGAA	1 cut(s)	175
SinI	GGWCC	3 cut(s)	4, 313, 410
Sse8387I	CCTGCAGG	1 cut(s)	439
Sse9I	AATT	6 cut(s)	86, 161, 426, 549, 672, 742
SsiI	CCGC	2 cut(s)	293, 632
SspMI	CTAG	8 cut(s)	15, 104, 221, 246, 359, 567, 699, 749
StyD4I	CCNGG	1 cut(s)	798
StyI	CCWWGG	2 cut(s)	245, 285
TaaI	ACNGT	2 cut(s)	391, 491
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	1 cut(s)	175
TasI	AATT	6 cut(s)	86, 161, 426, 549, 672, 742
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	4 cut(s)	192, 201, 423, 552
Tru9I	TTAA	4 cut(s)	192, 201, 423, 552
TseFI	GTSAC	2 cut(s)	121, 364
TseI	GCWGC	3 cut(s)	542, 712, 794
Tsp45I	GTSAC	2 cut(s)	121, 364
TspDTI	ATGAA	4 cut(s)	195, 210, 342, 591
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	3 cut(s)	4, 313, 410
XapI	RAATTY	3 cut(s)	86, 672, 742
XbaI	TCTAGA	2 cut(s)	220, 748
XmaJI	CCTAGG	1 cut(s)	245
XmnI	GAANNNNTTC	2 cut(s)	86, 149
XspI	CTAG	8 cut(s)	15, 104, 221, 246, 359, 567, 699, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.