Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

17658148 .. 17664982

Gene Structure 6835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGAGGATTAGAACCAACACTTGTACAAGAGTCTATCCTCCTAGATTGGTGCGACTTCGAGCACCAAATGCAGCGACGGAGGAACCGTACACAACCGCAATGACGACGGCACAACCGACATCGGGTACTCTGTTCTTTGTTTCGGGTGGTTTTGCTTTGAGGAGGAAAAATTGCAGGACAGTTGATTGGAAGAAGAATTCGGTGTTCAGCACAAGCACCACCTCCAGCTTGGTCAAGAAGTGCTTTTCCAAAGCCTATTTCTGTTGTTGGATCTACCGGTTCCATTGGAACCCGTCCCTAGCAGCTGGCTCAAACGTGACTCTTCTTGTTGATCAGGTTAAAAGTTTCAAACCCAAACTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAACGAGGCTCTATTTGGTCTAGAAGACAAGCCCGAGATCATTCCCCGGGGAGCAAGGAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

154

Amino Acids

17.41

Weight (kDa)

9.93

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	3 cut(s)	28, 92, 130
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	352
AhlI	ACTAGT	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	231, 308
AluI	AGCT	2 cut(s)	231, 308
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	2 cut(s)	431, 444
ApeKI	GCWGC	2 cut(s)	74, 305
ApoI	RAATTY	1 cut(s)	199
AsiGI	ACCGGT	1 cut(s)	279
AsuC2I	CCSGG	2 cut(s)	445, 446
AvaI	CYCGRG	2 cut(s)	431, 444
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	86, 317
BceAI	ACGGC	1 cut(s)	126
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	2 cut(s)	445, 446
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	4 cut(s)	45, 302, 362, 419
BisI	GCNGC	2 cut(s)	75, 306
BlsI	GCNGC	2 cut(s)	76, 307
Bme1390I	CCNGG	2 cut(s)	445, 446
BmeT110I	CYCGRG	2 cut(s)	431, 444
BmiI	GGNNCC	3 cut(s)	87, 284, 293
BmrFI	CCNGG	2 cut(s)	445, 446
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	445, 446
BsaJI	CCNNGG	3 cut(s)	443, 444, 445
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	443, 444, 445
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	86, 317
BshTI	ACCGGT	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	2 cut(s)	431, 444
BsiSI	CCGG	2 cut(s)	280, 445
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	283
BsoBI	CYCGRG	2 cut(s)	431, 444
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	273, 334, 435
BspACI	CCGC	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	87, 284, 293
BspPI	GGATC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	279
BsrGI	TGTACA	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	443, 444, 445
BssMI	GATC	3 cut(s)	273, 334, 435
Bst4CI	ACNGT	2 cut(s)	90, 184
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	276, 337, 438
BstMBI	GATC	3 cut(s)	273, 334, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	443, 444
BstV1I	GCAGC	2 cut(s)	86, 317
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	279
Cfr9I	CCCGGG	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	27, 91, 129
CspAI	ACCGGT	1 cut(s)	279
CviJI	RGCY	6 cut(s)	231, 257, 308, 312, 407, 430
CviKI_1	RGCY	6 cut(s)	231, 257, 308, 312, 407, 430
CviQI	GTAC	3 cut(s)	27, 91, 129
DpnI	GATC	3 cut(s)	275, 336, 437
DpnII	GATC	3 cut(s)	273, 334, 435
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco88I	CYCGRG	2 cut(s)	431, 444
EcoRI	GAATTC	1 cut(s)	199
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	75, 306
Fsp4HI	GCNGC	2 cut(s)	75, 306
FspBI	CTAG	4 cut(s)	45, 302, 362, 419
GluI	GCNGC	2 cut(s)	75, 306
GsuI	CTGGAG	1 cut(s)	211
HapII	CCGG	2 cut(s)	280, 445
HinfI	GANTC	4 cut(s)	33, 322, 380, 457
HpaII	CCGG	2 cut(s)	280, 445
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	238, 419
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	2 cut(s)	82, 112
HpyCH4III	ACNGT	2 cut(s)	90, 184
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	74, 177, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	273, 334, 435
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	6 cut(s)	163, 241, 293, 294, 323, 458
Lsp1109I	GCAGC	2 cut(s)	86, 317
MaeI	CTAG	4 cut(s)	45, 302, 362, 419
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	275, 336, 437
MboI	GATC	3 cut(s)	273, 334, 435
MboII	GAAGA	4 cut(s)	205, 208, 317, 434
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	2 cut(s)	172, 199
MlyI	GAGTC	2 cut(s)	42, 316
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	6 cut(s)	51, 76, 156, 159, 235, 397
MseI	TTAA	3 cut(s)	342, 390, 399
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	280, 445
MspR9I	CCNGG	2 cut(s)	445, 446
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	445, 446
NdeII	GATC	3 cut(s)	273, 334, 435
NlaIV	GGNNCC	3 cut(s)	87, 284, 293
NmuCI	GTSAC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 116
PfeI	GAWTC	1 cut(s)	380
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	76, 307
PleI	GAGTC	2 cut(s)	41, 316
PpsI	GAGTC	2 cut(s)	41, 316
PspN4I	GGNNCC	3 cut(s)	87, 284, 293
PsuI	RGATCY	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	28, 92, 130
RsaNI	GTAC	3 cut(s)	27, 91, 129
SaqAI	TTAA	3 cut(s)	342, 390, 399
SatI	GCNGC	2 cut(s)	75, 306
Sau3AI	GATC	3 cut(s)	273, 334, 435
SchI	GAGTC	2 cut(s)	42, 316
ScrFI	CCNGG	2 cut(s)	445, 446
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	5 cut(s)	227, 233, 310, 321, 342
SmaI	CCCGGG	1 cut(s)	446
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	2 cut(s)	172, 199
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	4 cut(s)	45, 302, 362, 419
StyD4I	CCNGG	2 cut(s)	443, 444
TaaI	ACNGT	2 cut(s)	90, 184
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	172, 199
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	342, 390, 399
Tru9I	TTAA	3 cut(s)	342, 390, 399
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	74, 305
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	393, 408
TspGWI	ACGGA	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	444
XapI	RAATTY	1 cut(s)	199
XbaI	TCTAGA	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmaI	CCCGGG	1 cut(s)	444
XspI	CTAG	4 cut(s)	45, 302, 362, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.