Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

65646028 .. 65648205

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG444000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTCCAAAAGCCTAGTTCTGTTGTTGGATCTACTAGTTCCATTGGAACCCAGACATTGGACATTGTTGCAGAGAACCTGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGTTGTCAAGTCCACTATCCAAGGGGCCGCTAAATGTTCAGTCTCAGGACCTTGTGAGGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATATCTTACTTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTTCAGATGGTGCAAACAAACTTTTGATGCTGTAATTAAAGTTGGGGCTTCTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGCTGTTTTCTCTTTTATTCATAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCGTTGAGAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCCTGGAAGACGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

225

Amino Acids

24.35

Weight (kDa)

5.28

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	8 - 49	1e-10	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	2 cut(s)	167, 494
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	86, 534, 604
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	337
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	4 cut(s)	110, 236, 574, 641
AluI	AGCT	4 cut(s)	110, 236, 574, 641
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	99, 164
ApeKI	GCWGC	3 cut(s)	371, 574, 656
ApoI	RAATTY	3 cut(s)	86, 534, 604
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	5 cut(s)	4, 100, 164, 187, 284
AsuHPI	GGTGA	2 cut(s)	286, 558
AvaII	GGWCC	3 cut(s)	4, 187, 284
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	358, 561, 668
BccI	CCATC	3 cut(s)	251, 378, 590
BciT130I	CCWGG	1 cut(s)	662
BciVI	GTATCC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	186
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	7 cut(s)	15, 36, 104, 233, 429, 561, 611
BfmI	CTRYAG	3 cut(s)	243, 309, 575
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	4 cut(s)	167, 372, 575, 657
BlsI	GCNGC	4 cut(s)	168, 373, 576, 658
Bme1390I	CCNGG	1 cut(s)	662
Bme18I	GGWCC	3 cut(s)	4, 187, 284
BmgT120I	GGNCC	5 cut(s)	4, 100, 164, 187, 284
BmiI	GGNNCC	3 cut(s)	49, 165, 492
BmrFI	CCNGG	1 cut(s)	662
BmsI	GCATC	2 cut(s)	394, 451
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	159, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	630, 644
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	2 cut(s)	159, 660
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	197, 279
BseNI	ACTGG	2 cut(s)	630, 644
BseXI	GCAGC	3 cut(s)	358, 561, 668
BshFI	GGCC	2 cut(s)	101, 166
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	101, 166
Bsp143I	GATC	3 cut(s)	29, 136, 563
BspACI	CCGC	2 cut(s)	167, 494
BspANI	GGCC	2 cut(s)	101, 166
BspCNI	CTCAG	2 cut(s)	196, 280
BspLI	GGNNCC	3 cut(s)	49, 165, 492
BspMAI	CTGCAG	3 cut(s)	247, 313, 579
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	630, 644
BssECI	CCNNGG	2 cut(s)	159, 660
BssMI	GATC	3 cut(s)	29, 136, 563
BssNI	GRCGYC	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	2 cut(s)	265, 365
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	112, 558
BstDEI	CTNAG	2 cut(s)	183, 288
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	3 cut(s)	32, 139, 566
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	29, 136, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 242
BstNI	CCWGG	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	660
BstSFI	CTRYAG	3 cut(s)	243, 309, 575
BstV1I	GCAGC	3 cut(s)	358, 561, 668
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	101, 166
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	112, 558
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	5 cut(s)	4, 100, 164, 187, 284
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	3 cut(s)	359, 437, 514
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	2 cut(s)	183, 288
DpnI	GATC	3 cut(s)	31, 138, 565
DpnII	GATC	3 cut(s)	29, 136, 563
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	4, 187, 284
EcoO109I	RGGNCCY	2 cut(s)	187, 284
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	362, 440, 517
FaiI	YATR	5 cut(s)	360, 438, 483, 515, 543
FatI	CATG	3 cut(s)	358, 436, 513
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	167, 372, 575, 657
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	4 cut(s)	167, 372, 575, 657
FspBI	CTAG	7 cut(s)	15, 36, 104, 233, 429, 561, 611
GluI	GCNGC	4 cut(s)	167, 372, 575, 657
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	101, 166
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	3 cut(s)	362, 440, 517
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	2 cut(s)	286, 558
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	92, 383
Hpy188III	TCNNGA	3 cut(s)	185, 287, 611
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	234, 610
HpyCH4III	ACNGT	2 cut(s)	265, 365
HpyCH4IV	ACGT	2 cut(s)	630, 669
HpyCH4V	TGCA	5 cut(s)	71, 245, 311, 390, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 242
HpyF3I	CTNAG	2 cut(s)	183, 288
HpySE526I	ACGT	2 cut(s)	630, 669
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	362, 440, 517
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	29, 136, 563
LmnI	GCTCC	2 cut(s)	433, 646
Lsp1109I	GCAGC	3 cut(s)	358, 561, 668
LweI	GCATC	2 cut(s)	394, 451
MaeI	CTAG	7 cut(s)	15, 36, 104, 233, 429, 561, 611
MaeII	ACGT	2 cut(s)	630, 669
MaeIII	GTNAC	2 cut(s)	121, 238
MalI	GATC	3 cut(s)	31, 138, 565
MboI	GATC	3 cut(s)	29, 136, 563
MboII	GAAGA	2 cut(s)	119, 677
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	4 cut(s)	86, 411, 534, 604
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	3 cut(s)	189, 203, 492
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	297, 414
MspR9I	CCNGG	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	2 cut(s)	107, 242
NdeII	GATC	3 cut(s)	29, 136, 563
NlaIII	CATG	3 cut(s)	362, 440, 517
NlaIV	GGNNCC	3 cut(s)	49, 165, 492
NmuCI	GTSAC	2 cut(s)	121, 238
PdmI	GAANNNNTTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	168, 373, 576, 658
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	2 cut(s)	187, 284
Psp5II	RGGWCCY	2 cut(s)	187, 284
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	3 cut(s)	49, 165, 492
PspPI	GGNCC	5 cut(s)	4, 100, 164, 187, 284
PspPPI	RGGWCCY	2 cut(s)	187, 284
PstI	CTGCAG	3 cut(s)	247, 313, 579
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	297, 414
SatI	GCNGC	4 cut(s)	167, 372, 575, 657
Sau3AI	GATC	3 cut(s)	29, 136, 563
Sau96I	GGNCC	5 cut(s)	4, 100, 164, 187, 284
SbfI	CCTGCAGG	1 cut(s)	313
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	662
SdaI	CCTGCAGG	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	394, 451
SfcI	CTRYAG	3 cut(s)	243, 309, 575
SinI	GGWCC	3 cut(s)	4, 187, 284
SpeI	ACTAGT	1 cut(s)	35
Sse8387I	CCTGCAGG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	86, 411, 534, 604
SsiI	CCGC	2 cut(s)	167, 494
SspMI	CTAG	7 cut(s)	15, 36, 104, 233, 429, 561, 611
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	265, 365
TaiI	ACGT	2 cut(s)	633, 672
TasI	AATT	4 cut(s)	86, 411, 534, 604
TauI	GCSGC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	297, 414
Tru9I	TTAA	2 cut(s)	297, 414
TseFI	GTSAC	2 cut(s)	121, 238
TseI	GCWGC	3 cut(s)	371, 574, 656
Tsp45I	GTSAC	2 cut(s)	121, 238
TspDTI	ATGAA	3 cut(s)	216, 453, 470
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	3 cut(s)	4, 187, 284
XapI	RAATTY	3 cut(s)	86, 534, 604
XbaI	TCTAGA	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	7 cut(s)	15, 36, 104, 233, 429, 561, 611
ZraI	GACGTC	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.