Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Reverse (-)

10965177 .. 10967984

Gene Structure 2808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG137200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGCCATGTAGAGTTGGACACTAGTAGCCAAACCTACTCTTCTTTGTCTTGCATTGGAGGCATACGTGTGAAGAGGTTCAAACCCAAACTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTTTCTGGTCTAGAAGACAAGCCTGAGATCATTCCTGGGGAGCAAGGAGTCATTGAGGTTGCTCGGCACCCAGATGCAGTCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGACTGAAGGTAATTGCATTGTCATTTTGTTTTGGTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

97

Amino Acids

10.29

Weight (kDa)

6.27

Isoelectric Point (pI)

22.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	24 - 87	1.1e-12	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	82
AhlI	ACTAGT	2 cut(s)	23, 91
AjnI	CCWGG	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	289
AoxI	GGCC	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	174
BcuI	ACTAGT	2 cut(s)	23, 91
BfaI	CTAG	3 cut(s)	24, 92, 149
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	6
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	2 cut(s)	46, 68
BstBAI	YACGTR	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	4 cut(s)	6, 30, 137, 160
CviKI_1	RGCY	4 cut(s)	6, 30, 137, 160
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	46, 68
EarI	CTCTTC	2 cut(s)	46, 68
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	11
FaiI	YATR	2 cut(s)	9, 65
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	7
FspBI	CTAG	3 cut(s)	24, 92, 149
HaeIII	GGCC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	11
HinfI	GANTC	2 cut(s)	110, 186
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	54, 98, 215, 248, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	7 cut(s)	129, 159, 174, 186, 216, 222, 234
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	24, 92, 149
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	217, 226
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	33, 85, 164
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	53, 69, 127, 187
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	120, 129
MslI	CAYNNNNRTG	2 cut(s)	68, 210
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	68, 210
SaqAI	TTAA	2 cut(s)	120, 129
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	5 cut(s)	38, 70, 80, 198, 261
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	68, 210
SpeI	ACTAGT	2 cut(s)	23, 91
Sse9I	AATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	24, 92, 149
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	70
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	120, 129
Tru9I	TTAA	2 cut(s)	120, 129
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	123, 138
XbaI	TCTAGA	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	3 cut(s)	24, 92, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.