Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000082.1

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Reverse (-)

75579 .. 78619

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000082.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgctttcaattcaatggcgaggtcattcgtgcgagtttcattctgtccgagcgcaatttcgattcaactcggatgctttctcttctctgctgacggagagtacgcgtcttgggtgggaagtgcttttccggagccgggccagaggacttgagatggtccaaaagcctagttctgttgttggatctactggttccattggaacccagacattggacattgttgcagagaacccgaaaaaattcagagttgtggccctagtagctggctcaaatgtgactcttcttgttgatcaggtgaaaaggttcaaacccaaattagttgcagttagaaatgaatcattagttaatgaacttaaagagactctatctggtctagaagacaagcatgagatcactcctagggagcaaggagtcattgagtgtaggattccaagatgccattggctgttacaatgctgctattcaggtgagatagaagatgaacctaaatttcaatttccaaattttcaactaagggaagagagggatatgaagcctgagacttttgttagactcgtctcagctattatctattatctacgagaaaaggctaaggccatggctggtgatactgttgtaaggtcattgctagaaaagatggctgaatgtgctagcaatgtgtacctggagtattgtgtttgtgggtgggtctatgaaggagtcattgatgtcccttatggtgaatttttcattgctgagaacaaatctcttcaaaaggaaagcctcaagattatgaagccaagtattggaggcaacgttacagccttaaggatggaagtcctagctttcttgcaaatattgttgggacaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

284

Amino Acids

32.28

Weight (kDa)

7.54

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	211, 785
AccII	CGCG	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	129
AclI	AACGTT	1 cut(s)	795
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	4 cut(s)	239, 488, 502, 722
AfaI	GTAC	2 cut(s)	103, 662
AfiI	CCNNNNNNNGG	3 cut(s)	136, 211, 785
AflII	CTTAAG	1 cut(s)	805
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	7 cut(s)	9, 14, 67, 307, 494, 509, 752
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	3 cut(s)	263, 563, 824
AluI	AGCT	3 cut(s)	263, 563, 824
Alw26I	GTCTC	3 cut(s)	353, 533, 562
AlwI	GGATC	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	129
AoxI	GGCC	3 cut(s)	138, 252, 594
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	4 cut(s)	239, 488, 502, 722
Asp700I	GAANNNNTTC	2 cut(s)	239, 302
AspA2I	CCTAGG	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	3 cut(s)	138, 157, 253
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	4 cut(s)	307, 479, 617, 731
AsuNHI	GCTAGC	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	157
AvrII	CCTAGG	1 cut(s)	398
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	148, 631, 805
BciT130I	CCWGG	1 cut(s)	665
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	353, 533, 562
BfaI	CTAG	7 cut(s)	168, 257, 374, 399, 629, 651, 821
BfrI	CTTAAG	1 cut(s)	805
BisI	GCNGC	1 cut(s)	457
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	137, 665
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	3 cut(s)	138, 157, 253
BmiI	GGNNCC	3 cut(s)	134, 193, 202
BmrFI	CCNGG	2 cut(s)	137, 665
BmsI	GCATC	2 cut(s)	64, 425
BmtI	GCTAGC	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	170, 749
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	398, 597
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 211, 785
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	3 cut(s)	623, 661, 729
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	398, 597
BseGI	GGATG	2 cut(s)	79, 816
BseLI	CCNNNNNNNGG	3 cut(s)	136, 211, 785
BseMI	GCAATG	3 cut(s)	623, 661, 729
BseMII	CTCAG	3 cut(s)	528, 573, 726
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	140, 254, 596
BsiSI	CCGG	2 cut(s)	130, 136
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	3 cut(s)	136, 211, 785
BsmAI	GTCTC	3 cut(s)	353, 533, 562
BsmBI	CGTCTC	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	140, 254, 596
Bsp13I	TCCGGA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	182, 289, 390
Bsp19I	CCATGG	1 cut(s)	597
BspANI	GGCC	3 cut(s)	140, 254, 596
BspCNI	CTCAG	3 cut(s)	529, 572, 727
BspEI	TCCGGA	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	3 cut(s)	134, 193, 202
BspOI	GCTAGC	1 cut(s)	654
BspPI	GGATC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	805
BsrDI	GCAATG	3 cut(s)	623, 661, 729
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	398, 597
BssMI	GATC	3 cut(s)	182, 289, 390
BssT1I	CCWWGG	2 cut(s)	398, 597
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	4 cut(s)	88, 285, 513, 753
BstAFI	CTTAAG	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	265, 652
BstDEI	CTNAG	5 cut(s)	512, 537, 559, 591, 735
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	79, 816
BstFNI	CGCG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	185, 292, 393
BstMAI	GTCTC	3 cut(s)	353, 533, 562
BstMBI	GATC	3 cut(s)	182, 289, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 647
BstNI	CCWGG	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	135, 663
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	140, 254, 596
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	79, 816
Cac8I	GCNNGC	2 cut(s)	265, 652
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	138, 157, 253
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	102, 661
CviAII	CATG	2 cut(s)	386, 598
CviQI	GTAC	2 cut(s)	102, 661
DdeI	CTNAG	5 cut(s)	512, 537, 559, 591, 735
DpnI	GATC	3 cut(s)	184, 291, 392
DpnII	GATC	3 cut(s)	182, 289, 390
Eam1104I	CTCTTC	4 cut(s)	88, 285, 513, 753
EarI	CTCTTC	4 cut(s)	88, 285, 513, 753
Eco130I	CCWWGG	2 cut(s)	398, 597
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	2 cut(s)	398, 597
ErhI	CCWWGG	2 cut(s)	398, 597
Esp3I	CGTCTC	1 cut(s)	562
FaeI	CATG	2 cut(s)	389, 601
FaiI	YATR	6 cut(s)	387, 530, 599, 693, 717, 773
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	2 cut(s)	385, 597
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	457
FokI	GGATG	2 cut(s)	86, 823
Fsp4HI	GCNGC	1 cut(s)	457
FspBI	CTAG	7 cut(s)	168, 257, 374, 399, 629, 651, 821
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	3 cut(s)	140, 254, 596
HapII	CCGG	2 cut(s)	130, 136
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	389, 601
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	8 cut(s)	63, 277, 335, 361, 411, 427, 552, 699
HpaII	CCGG	2 cut(s)	130, 136
HphI	GGTGA	4 cut(s)	307, 479, 617, 731
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	3 cut(s)	50, 73, 245
Hpy188III	TCNNGA	3 cut(s)	130, 374, 766
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	1 cut(s)	689
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	3 cut(s)	224, 323, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 647
HpyF3I	CTNAG	5 cut(s)	512, 537, 559, 591, 735
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	2 cut(s)	389, 601
HspAI	GCGC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	182, 289, 390
LmnI	GCTCC	2 cut(s)	132, 403
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	2 cut(s)	64, 425
MaeI	CTAG	7 cut(s)	168, 257, 374, 399, 629, 651, 821
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	3 cut(s)	274, 447, 796
MalI	GATC	3 cut(s)	184, 291, 392
MboI	GATC	3 cut(s)	182, 289, 390
MboII	GAAGA	6 cut(s)	75, 272, 389, 488, 530, 740
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	9 cut(s)	9, 56, 239, 314, 488, 494, 502, 722, 848
MluI	ACGCGT	1 cut(s)	104
MlyI	GAGTC	5 cut(s)	271, 355, 420, 546, 708
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	14, 137, 516, 773, 782
MroI	TCCGGA	1 cut(s)	129
MroXI	GAANNNNTTC	2 cut(s)	239, 302
MseI	TTAA	4 cut(s)	345, 354, 806, 853
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	2 cut(s)	130, 136
MspR9I	CCNGG	2 cut(s)	137, 665
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	260, 647
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	3 cut(s)	182, 289, 390
NheI	GCTAGC	1 cut(s)	650
NlaIII	CATG	2 cut(s)	389, 601
NlaIV	GGNNCC	3 cut(s)	134, 193, 202
NmuCI	GTSAC	1 cut(s)	274
PdmI	GAANNNNTTC	2 cut(s)	239, 302
PfeI	GAWTC	3 cut(s)	63, 335, 427
PflMI	CCANNNNNTGG	2 cut(s)	211, 785
PkrI	GCNGC	1 cut(s)	458
PleI	GAGTC	5 cut(s)	271, 355, 419, 546, 707
PpsI	GAGTC	5 cut(s)	271, 355, 419, 546, 707
Psp1406I	AACGTT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	134, 193, 202
PspPI	GGNCC	3 cut(s)	138, 157, 253
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	2 cut(s)	103, 662
RsaNI	GTAC	2 cut(s)	102, 661
SaqAI	TTAA	4 cut(s)	345, 354, 806, 853
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	3 cut(s)	182, 289, 390
Sau96I	GGNCC	3 cut(s)	138, 157, 253
SchI	GAGTC	5 cut(s)	271, 355, 420, 546, 708
ScrFI	CCNGG	2 cut(s)	137, 665
SfaNI	GCATC	2 cut(s)	64, 425
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	3 cut(s)	149, 764, 805
SmoI	CTYRAG	3 cut(s)	149, 764, 805
Sse9I	AATT	9 cut(s)	9, 56, 239, 314, 488, 494, 502, 722, 848
SspI	AATATT	1 cut(s)	837
SspMI	CTAG	7 cut(s)	168, 257, 374, 399, 629, 651, 821
StyD4I	CCNGG	2 cut(s)	135, 663
StyI	CCWWGG	2 cut(s)	398, 597
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	1 cut(s)	61
TasI	AATT	9 cut(s)	9, 56, 239, 314, 488, 494, 502, 722, 848
TfiI	GAWTC	3 cut(s)	63, 335, 427
Tru1I	TTAA	4 cut(s)	345, 354, 806, 853
Tru9I	TTAA	4 cut(s)	345, 354, 806, 853
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	456
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	8 cut(s)	29, 348, 363, 495, 545, 708, 718, 788
TspGWI	ACGGA	1 cut(s)	110
Van91I	CCANNNNNTGG	2 cut(s)	211, 785
Vha464I	CTTAAG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	4 cut(s)	239, 488, 502, 722
XbaI	TCTAGA	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XmaJI	CCTAGG	1 cut(s)	398
XmnI	GAANNNNTTC	2 cut(s)	239, 302
XspI	CTAG	7 cut(s)	168, 257, 374, 399, 629, 651, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.