Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008170

Physical Location & Seq

Genomic Coordinates Forward (+)

31414643 .. 31423140

Gene Structure 8498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTACCCAGAATCCAAAAGGGTCTGGAATCCTTGAATAAAAATACACTCTTTGGGTTTCTCTATCCAAGGGGTTTGGCATCAACCCCACTAAGCCAAATCACTAGAAAAAGAGAAGAACTCGAGAAGCTGCGGCGACATTGGGATTGGCGCGGCAGCTGGTGGAGTCGGGCCAGGAAAGAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTCAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGGTGAAAAGGTTCAAACCTAAATTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAAGACAAGCCTGAGATCACTCATAGGGAGCAAGGAGTCATTGAGTTGTCAAGTCCACTATCCAAGGGGCCGCTAAATGTTCAGTCTCAGGACCTTGTGAGGAATGATAGTAGATGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCTTGCAGGAGAATATCTTACTTCTGCCTTGAATGATTTTGACCCTGAACTACATGACAGTCTTGCTGCCATTTCAGATGGTGCAAACAAACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGCTGGGGCTTTTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGCTGTTTTCTCTTTTATTCGTAAAATGGAAGCGCAGAGGGTAATGGACACCATGCTTGTATTCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCAGTTGAAAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCCTGGAAGAAGTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

315

Amino Acids

35.1

Weight (kDa)

8.63

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DXP_reductoisom	PF02670	60 - 134	5.2e-15	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360281
rosa_laevigata	RLG00000018534 RLG00000022811 RLG00000029560
rosa_multiflora	Rmu_co8335897.1_g000001 Rmu_sc0000082.1_g000021
rosa_roxburghii	Rroxscaffold_4G00320420 Rroxscaffold_5G00346690
rosa_rugosa	Rorug03G0178600 Rorug05G0448700.1 Rorug06G0217900 Rorug06G0217900
rosa_samantha	Rh2AG271400 Rh2AG444000 Rh2CG372200 Rh3BG356100 Rh4CG185900 Rh5AG263200 Rh5BG273100 Rh5CG578900 Rh5DG281100 Rh6AG351000 Rh6BG096600 Rh7AG137200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	133, 153, 422
AcsI	RAATTY	3 cut(s)	215, 801, 871
AfaI	GTAC	1 cut(s)	517
AgsI	TTSAA	4 cut(s)	37, 283, 592, 869
AjnI	CCWGG	2 cut(s)	173, 927
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	7 cut(s)	130, 159, 239, 491, 686, 841, 908
AluI	AGCT	7 cut(s)	130, 159, 239, 491, 686, 841, 908
Alw26I	GTCTC	2 cut(s)	176, 441
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	171, 228, 419
ApeKI	GCWGC	6 cut(s)	130, 156, 626, 671, 841, 923
ApoI	RAATTY	3 cut(s)	215, 801, 871
Asp700I	GAANNNNTTC	3 cut(s)	215, 278, 873
AspLEI	GCGC	2 cut(s)	153, 763
AspS9I	GGNCC	5 cut(s)	171, 229, 419, 442, 539
AsuHPI	GGTGA	3 cut(s)	283, 541, 825
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	442, 539
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	6 cut(s)	117, 168, 613, 658, 828, 935
BccI	CCATC	4 cut(s)	459, 506, 632, 857
BciT130I	CCWGG	2 cut(s)	175, 929
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	176, 441
BfaI	CTAG	6 cut(s)	105, 233, 350, 488, 828, 878
BfmI	CTRYAG	3 cut(s)	498, 672, 842
BisI	GCNGC	9 cut(s)	131, 134, 154, 157, 422, 627, 672, 842, 924
BlsI	GCNGC	9 cut(s)	132, 135, 155, 158, 423, 628, 673, 843, 925
Bme1390I	CCNGG	2 cut(s)	175, 929
Bme18I	GGWCC	2 cut(s)	442, 539
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	5 cut(s)	171, 229, 419, 442, 539
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	2 cut(s)	175, 929
BmsI	GCATC	3 cut(s)	89, 648, 718
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	2 cut(s)	846, 894
BsaJI	CCNNGG	3 cut(s)	68, 414, 927
Bse1I	ACTGG	3 cut(s)	863, 897, 911
BseBI	CCWGG	2 cut(s)	175, 929
BseDI	CCNNGG	3 cut(s)	68, 414, 927
BseGI	GGATG	1 cut(s)	478
BseMII	CTCAG	3 cut(s)	354, 452, 534
BseNI	ACTGG	3 cut(s)	863, 897, 911
BseXI	GCAGC	6 cut(s)	117, 168, 613, 658, 828, 935
BseYI	CCCAGC	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	173, 230, 421
BsiHKCI	CYCGRG	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	176, 441
BsnI	GGCC	3 cut(s)	173, 230, 421
BsoBI	CYCGRG	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	265, 366, 830
BspACI	CCGC	3 cut(s)	133, 153, 422
BspANI	GGCC	3 cut(s)	173, 230, 421
BspCNI	CTCAG	3 cut(s)	355, 451, 535
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	3 cut(s)	502, 676, 846
BsrI	ACTGG	3 cut(s)	863, 897, 911
BssECI	CCNNGG	3 cut(s)	68, 414, 927
BssMI	GATC	3 cut(s)	265, 366, 830
BssT1I	CCWWGG	2 cut(s)	68, 414
Bst2UI	CCWGG	2 cut(s)	175, 929
Bst4CI	ACNGT	2 cut(s)	520, 620
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	241, 825
BstDEI	CTNAG	4 cut(s)	92, 363, 438, 543
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	153, 763
BstKTI	GATC	3 cut(s)	268, 369, 833
BstMAI	GTCTC	2 cut(s)	176, 441
BstMBI	GATC	3 cut(s)	265, 366, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 497
BstNI	CCWGG	2 cut(s)	175, 929
BstSCI	CCNGG	2 cut(s)	173, 927
BstSFI	CTRYAG	3 cut(s)	498, 672, 842
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	6 cut(s)	117, 168, 613, 658, 828, 935
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	173, 230, 421
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	241, 825
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	153, 763
Cfr13I	GGNCC	5 cut(s)	171, 229, 419, 442, 539
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	3 cut(s)	614, 704, 781
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	4 cut(s)	92, 363, 438, 543
DpnI	GATC	3 cut(s)	267, 368, 832
DpnII	GATC	3 cut(s)	265, 366, 830
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	68, 414
Eco47I	GGWCC	2 cut(s)	442, 539
Eco88I	CYCGRG	1 cut(s)	122
EcoO109I	RGGNCCY	2 cut(s)	442, 539
EcoRII	CCWGG	2 cut(s)	173, 927
EcoT14I	CCWWGG	2 cut(s)	68, 414
ErhI	CCWWGG	2 cut(s)	68, 414
FaeI	CATG	3 cut(s)	617, 707, 784
FaiI	YATR	5 cut(s)	375, 615, 705, 782, 810
FatI	CATG	3 cut(s)	613, 703, 780
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	9 cut(s)	131, 134, 154, 157, 422, 627, 672, 842, 924
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	9 cut(s)	131, 134, 154, 157, 422, 627, 672, 842, 924
FspBI	CTAG	6 cut(s)	105, 233, 350, 488, 828, 878
GlaI	GCGC	2 cut(s)	152, 762
GluI	GCNGC	9 cut(s)	131, 134, 154, 157, 422, 627, 672, 842, 924
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	2 cut(s)	846, 894
HaeIII	GGCC	3 cut(s)	173, 230, 421
HhaI	GCGC	2 cut(s)	153, 763
Hin1II	CATG	3 cut(s)	617, 707, 784
Hin6I	GCGC	2 cut(s)	151, 761
HinP1I	GCGC	2 cut(s)	151, 761
HinfI	GANTC	6 cut(s)	12, 29, 166, 253, 311, 387
HphI	GGTGA	3 cut(s)	283, 541, 825
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	221, 637
Hpy188III	TCNNGA	6 cut(s)	26, 124, 350, 440, 542, 878
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	489, 877
HpyCH4III	ACNGT	2 cut(s)	520, 620
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	7 cut(s)	200, 299, 500, 566, 644, 674, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 497
HpyF3I	CTNAG	4 cut(s)	92, 363, 438, 543
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	3 cut(s)	617, 707, 784
HspAI	GCGC	2 cut(s)	151, 761
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	265, 366, 830
LmnI	GCTCC	3 cut(s)	379, 700, 913
Lsp1109I	GCAGC	6 cut(s)	117, 168, 613, 658, 828, 935
LweI	GCATC	3 cut(s)	89, 648, 718
MaeI	CTAG	6 cut(s)	105, 233, 350, 488, 828, 878
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	2 cut(s)	250, 493
MalI	GATC	3 cut(s)	267, 368, 832
MboI	GATC	3 cut(s)	265, 366, 830
MboII	GAAGA	4 cut(s)	128, 248, 365, 944
MluCI	AATT	5 cut(s)	215, 290, 678, 801, 871
MlyI	GAGTC	3 cut(s)	175, 247, 396
MnlI	CCTC	3 cut(s)	328, 444, 759
MroXI	GAANNNNTTC	3 cut(s)	215, 278, 873
MseI	TTAA	4 cut(s)	321, 330, 552, 681
MspA1I	CMGCKG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	175, 929
MvaI	CCWGG	2 cut(s)	175, 929
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	236, 497
NdeII	GATC	3 cut(s)	265, 366, 830
NlaIII	CATG	3 cut(s)	617, 707, 784
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	250, 493
PaeR7I	CTCGAG	1 cut(s)	122
PdmI	GAANNNNTTC	3 cut(s)	215, 278, 873
PfeI	GAWTC	3 cut(s)	12, 29, 311
PkrI	GCNGC	9 cut(s)	132, 135, 155, 158, 423, 628, 673, 843, 925
PleI	GAGTC	3 cut(s)	174, 247, 395
PpsI	GAGTC	3 cut(s)	174, 247, 395
PpuMI	RGGWCCY	2 cut(s)	442, 539
Psp5II	RGGWCCY	2 cut(s)	442, 539
Psp6I	CCWGG	2 cut(s)	173, 927
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	173, 927
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	5 cut(s)	171, 229, 419, 442, 539
PspPPI	RGGWCCY	2 cut(s)	442, 539
PstI	CTGCAG	3 cut(s)	502, 676, 846
PstNI	CAGNNNCTG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SaqAI	TTAA	4 cut(s)	321, 330, 552, 681
SatI	GCNGC	9 cut(s)	131, 134, 154, 157, 422, 627, 672, 842, 924
Sau3AI	GATC	3 cut(s)	265, 366, 830
Sau96I	GGNCC	5 cut(s)	171, 229, 419, 442, 539
SchI	GAGTC	3 cut(s)	175, 247, 396
ScrFI	CCNGG	2 cut(s)	175, 929
SfaNI	GCATC	3 cut(s)	89, 648, 718
SfcI	CTRYAG	3 cut(s)	498, 672, 842
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	442, 539
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	5 cut(s)	215, 290, 678, 801, 871
SsiI	CCGC	3 cut(s)	133, 153, 422
SspMI	CTAG	6 cut(s)	105, 233, 350, 488, 828, 878
StyD4I	CCNGG	2 cut(s)	173, 927
StyI	CCWWGG	2 cut(s)	68, 414
TaaI	ACNGT	2 cut(s)	520, 620
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	1 cut(s)	123
TasI	AATT	5 cut(s)	215, 290, 678, 801, 871
TauI	GCSGC	3 cut(s)	136, 156, 424
TfiI	GAWTC	3 cut(s)	12, 29, 311
Tru1I	TTAA	4 cut(s)	321, 330, 552, 681
Tru9I	TTAA	4 cut(s)	321, 330, 552, 681
TseFI	GTSAC	2 cut(s)	250, 493
TseI	GCWGC	6 cut(s)	130, 156, 626, 671, 841, 923
Tsp45I	GTSAC	2 cut(s)	250, 493
TspDTI	ATGAA	4 cut(s)	324, 339, 471, 720
TspGWI	ACGGA	1 cut(s)	782
VpaK11BI	GGWCC	2 cut(s)	442, 539
XapI	RAATTY	3 cut(s)	215, 801, 871
XbaI	TCTAGA	2 cut(s)	349, 877
XhoI	CTCGAG	1 cut(s)	122
XmnI	GAANNNNTTC	3 cut(s)	215, 278, 873
XspI	CTAG	6 cut(s)	105, 233, 350, 488, 828, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.