Prupe.8G254100_v2.0.a1

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013616
Physical Location & Seq
Reverse (-)
21735132 .. 21737027
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G254100.2

Sequence Viewer

Length: 399 bp
ATGGGTCAAAGAGAGGAGATAGAGCTTAAGTTCAGGATTTATGATGGGACAGATATAGGACACCATTCTTATGCACCATCTATGACAGTAGCAAATCTAAAGAAAAGGCTACTTGCTGAGTGGCCTCAAGGTAATATAGCCACAGCCAAATTGGATTTTGATGAACCGAAAACAGTGACACCCAAGTCTGCAAATGAAGTTAAACTCATACATAGTGGCAGAATTTTAGAGAATAACAAAACACTTGCTGATTCCAGAATAACCTCTGCTAACCAGCCTGGTGGTGGGGCTGTAATCATGCATGCAGTAGTGCAGCCCCTTGTACCCAAACAAAAGAAGACAGATAAAAACCAGAAAGATATGCAAAAGATGAATTCATGCTCGTGCACCCTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

133

Amino Acids

14.63

Weight (kDa)

9.3

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 184
AcsI RAATTY 2 cut(s) 222, 373
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 284
AflII CTTAAG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 389
Alw44I GTGCAC 1 cut(s) 385
AoxI GGCC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 2 cut(s) 222, 373
BaeGI GKGCMC 1 cut(s) 389
BauI CACGAG 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 325
BccI CCATC 2 cut(s) 38, 85
BciT130I CCWGG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 389
BseXI GCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 332
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 389
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 389
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 26
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 88, 175
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 117
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuRI GGCC 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 298, 302, 378
CviJI RGCY 8 cut(s) 25, 109, 124, 140, 146, 277, 290, 316
CviKI_1 RGCY 8 cut(s) 25, 109, 124, 140, 146, 277, 290, 316
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 303
FaeI CATG 3 cut(s) 301, 305, 381
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 297, 301, 377
Fnu4HI GCNGC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 3 cut(s) 301, 305, 381
HinfI GANTC 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 387
Hpy188III TCNNGA 2 cut(s) 34, 255
Hpy8I GTNNAC 1 cut(s) 387
HpyCH4III ACNGT 2 cut(s) 88, 175
HpyCH4V TGCA 7 cut(s) 74, 191, 301, 305, 313, 364, 387
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 3 cut(s) 301, 305, 381
LpnPI CCDG 6 cut(s) 19, 264, 268, 287, 291, 365
Lsp1109I GCAGC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 3 cut(s) 149, 222, 373
MnlI CCTC 3 cut(s) 7, 135, 274
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 3 cut(s) 27, 201, 397
MslI CAYNNNNRTG 2 cut(s) 69, 382
MspCI CTTAAG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
NlaIII CATG 3 cut(s) 301, 305, 381
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 2 cut(s) 69, 382
SaqAI TTAA 3 cut(s) 27, 201, 397
SatI GCNGC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 389
SetI ASST 3 cut(s) 27, 133, 266
SmiMI CAYNNNNRTG 2 cut(s) 69, 382
SmlI CTYRAG 2 cut(s) 26, 126
SmoI CTYRAG 2 cut(s) 26, 126
SphI GCATGC 1 cut(s) 305
Sse9I AATT 3 cut(s) 149, 222, 373
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 88, 175
TasI AATT 3 cut(s) 149, 222, 373
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 27, 201, 397
Tru9I TTAA 3 cut(s) 27, 201, 397
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 177, 210, 366, 386
TspRI CASTG 1 cut(s) 180
Vha464I CTTAAG 1 cut(s) 26
VneI GTGCAC 1 cut(s) 385
XapI RAATTY 2 cut(s) 222, 373
XceI RCATGY 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 281
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.