pycom03g22120

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013616
Physical Location & Seq
Reverse (-)
22298836 .. 22299270
435 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g22120.2

Sequence Viewer

Length: 312 bp
ATGGGGCAAAGAGGGGAGCATATAGCACTCAAGTTCCGGATTTACGACGGGACAGATATAGGACACAACAGTTATGCACCATCTATGACAGTATCATCTCTTAAGAAAAGGCTACTTGCTGAGTGGCCTCAAGCAAAAACAGTGACGCCGAAGTCAGTAGACGAAGTGAAAATCATACATGGTGGCAGAGTTTTAGAGAATAGCAAGACACTTGCTGATTCCAGAATAACCGCGGGTAATGAGACCGGTGAGGCTGTGATCATGCATGCCGTAGTACAGCCTCTTGTACCCAAAAACAAAAAGACAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

104

Amino Acids

11.22

Weight (kDa)

9.7

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 233
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 2 cut(s) 231, 233
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 2 cut(s) 276, 288
AflII CTTAAG 1 cut(s) 101
AgeI ACCGGT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 1 cut(s) 125
AsiGI ACCGGT 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 260
BccI CCATC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 254
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 236
BfrI CTTAAG 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 14, 114
BsaHI GRCGYC 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 2 cut(s) 36, 245
Bse118I RCCGGY 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 127
BshTI ACCGGT 1 cut(s) 245
BsiSI CCGG 2 cut(s) 37, 246
BslFI GGGAC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 236
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 2 cut(s) 231, 233
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 258
BssNI GRCGYC 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 71, 91, 142
BstACI GRCGYC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 269
BstUI CGCG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 245
Cfr42I CCGCGG 1 cut(s) 234
CseI GACGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 275, 287
CspAI ACCGGT 1 cut(s) 245
CviAII CATG 3 cut(s) 179, 262, 266
CviJI RGCY 4 cut(s) 112, 127, 254, 280
CviKI_1 RGCY 4 cut(s) 112, 127, 254, 280
CviQI GTAC 2 cut(s) 275, 287
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 267
FaeI CATG 3 cut(s) 182, 265, 269
FaiI YATR 9 cut(s) 21, 23, 59, 75, 86, 176, 180, 263, 267
FaqI GGGAC 1 cut(s) 64
FatI CATG 3 cut(s) 178, 261, 265
FauI CCCGC 1 cut(s) 226
FbaI TGATCA 1 cut(s) 258
FblI GTMKAC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 127
HapII CCGG 2 cut(s) 37, 246
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 3 cut(s) 182, 265, 269
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 37, 246
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 37, 222
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 3 cut(s) 71, 91, 142
HpyCH4V TGCA 2 cut(s) 77, 265
HpyF3I CTNAG 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 3 cut(s) 182, 265, 269
Kpn2I TCCGGA 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 258
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 50, 235, 259, 291
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MnlI CCTC 4 cut(s) 5, 138, 244, 291
Mph1103I ATGCAT 1 cut(s) 267
MroI TCCGGA 1 cut(s) 36
MseI TTAA 2 cut(s) 102, 310
MspA1I CMGCKG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 2 cut(s) 37, 246
MvnI CGCG 1 cut(s) 233
NdeII GATC 1 cut(s) 258
NlaIII CATG 3 cut(s) 182, 265, 269
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 245
RsaI GTAC 2 cut(s) 276, 288
RsaNI GTAC 2 cut(s) 275, 287
SacII CCGCGG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 102, 310
Sau3AI GATC 1 cut(s) 258
SetI ASST 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SmlI CTYRAG 3 cut(s) 29, 101, 129
SmoI CTYRAG 3 cut(s) 29, 101, 129
SphI GCATGC 1 cut(s) 269
SsiI CCGC 2 cut(s) 231, 233
TaaI ACNGT 3 cut(s) 71, 91, 142
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 102, 310
Tru9I TTAA 2 cut(s) 102, 310
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspRI CASTG 1 cut(s) 147
Vha464I CTTAAG 1 cut(s) 101
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.