Rorug06G0230200

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013616
Physical Location & Seq
Forward (+)
37093364 .. 37094783
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0230200.1

Sequence Viewer

Length: 585 bp
ATGCTGAGCCTAAGCCTCTCTCTCAGTCCAGCTCCTGGCTTCTATTCTGTCTTCCCCGATATACCAACCCAAATCCTCTACCCTAATTCACCGGTTGTTCTTAGTCTCCAGCGAGAAATTAGGGTTCGAATTGGGGCTCGCTCTTCACTTCTCCAATTCTCCAAATCAGCCTCCGACTCCATCTACCTAGTCGATAATCGAAGCTCCGCTTTGCATTACCCAAATCAATTCAAGGCTTCTCGATTCGGTAAGCTGACCCGCCAATTCGCCAGACGGACCCAACTCAGTTGCTTCCACAACGAGAACCAACCCGCTCTCTCCAAGGATGAACAAGGCCCGCCTCAGGAGGTCGTTCTCAAAGCTATTTCAGGTTTCGTTTTCAGGGAAGCTTCAACCTTTTTGAAAGTCGGAGGCACTGACATAGCTCATTATCTAGCCAAGGGTCAGGGTGAATCAGAATTATTGACGAGAGCACCAAAGGATCCTGTTGAACCCGAAAAGGTTCTTAAAGCAGCCCAAGTCAAACTCGTCCTCACCACTCAAGTCAGTCATCACCATTGTGATCCTTCGAGCTGTTTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

194

Amino Acids

21.41

Weight (kDa)

9.35

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 314
AciI CCGC 4 cut(s) 207, 259, 312, 338
AclWI GGATC 3 cut(s) 476, 489, 557
AfiI CCNNNNNNNGG 2 cut(s) 35, 343
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 4 cut(s) 232, 393, 403, 491
AjnI CCWGG 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 558
AluBI AGCT 7 cut(s) 32, 204, 253, 362, 389, 425, 573
AluI AGCT 7 cut(s) 32, 204, 253, 362, 389, 425, 573
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 476, 489, 557
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 512
AsiGI ACCGGT 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 501
AspS9I GGNCC 2 cut(s) 276, 335
AsuHPI GGTGA 4 cut(s) 81, 461, 526, 545
AsuII TTCGAA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 276
AxyI CCTNAGG 1 cut(s) 342
BamHI GGATCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 524
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 188, 434
BisI GCNGC 1 cut(s) 513
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 514
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 2 cut(s) 276, 335
BmiI GGNNCC 2 cut(s) 278, 483
BmrFI CCNGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 321, 438
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 343
Bse118I RCCGGY 1 cut(s) 91
Bse21I CCTNAGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 321, 438
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 35, 343
BseMII CTCAG 3 cut(s) 37, 298, 356
BseXI GCAGC 1 cut(s) 524
BshFI GGCC 1 cut(s) 336
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 35, 343
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 139, 475
Bsp143I GATC 2 cut(s) 481, 562
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 4 cut(s) 207, 259, 312, 338
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 3 cut(s) 36, 297, 355
BspLI GGNNCC 2 cut(s) 278, 483
BspPI GGATC 3 cut(s) 476, 489, 557
BspQI GCTCTTC 1 cut(s) 148
BspT104I TTCGAA 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 321, 438
BssMI GATC 2 cut(s) 481, 562
BssT1I CCWWGG 2 cut(s) 321, 438
Bst2UI CCWGG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 139, 338
BstDEI CTNAG 6 cut(s) 5, 11, 23, 101, 284, 342
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 484, 565
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 481, 562
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 139, 338
CaiI CAGNNNCTG 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 276, 335
CspAI ACCGGT 1 cut(s) 91
DdeI CTNAG 6 cut(s) 5, 11, 23, 101, 284, 342
DpnI GATC 2 cut(s) 483, 564
DpnII GATC 2 cut(s) 481, 562
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 321, 438
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 321, 438
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 2 cut(s) 321, 438
FaiI YATR 2 cut(s) 62, 422
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FauI CCCGC 3 cut(s) 266, 319, 345
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 2 cut(s) 188, 434
GluI GCNGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 3 cut(s) 176, 243, 452
HpaII CCGG 1 cut(s) 92
HphI GGTGA 4 cut(s) 81, 461, 526, 545
Hpy188I TCNGA 3 cut(s) 175, 410, 457
Hpy188III TCNNGA 2 cut(s) 240, 344
HpyAV CCTTC 1 cut(s) 576
HpyCH4V TGCA 1 cut(s) 214
HpyF3I CTNAG 6 cut(s) 5, 11, 23, 101, 284, 342
Kzo9I GATC 2 cut(s) 481, 562
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 37, 209
Lsp1109I GCAGC 1 cut(s) 524
MaeI CTAG 2 cut(s) 188, 434
MalI GATC 2 cut(s) 483, 564
MbiI CCGCTC 1 cut(s) 314
MboI GATC 2 cut(s) 481, 562
MboII GAAGA 2 cut(s) 43, 135
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 139, 475
MluCI AATT 7 cut(s) 85, 117, 129, 155, 227, 263, 458
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 198, 388
MnlI CCTC 7 cut(s) 26, 86, 181, 340, 351, 404, 542
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
NdeII GATC 2 cut(s) 481, 562
NlaIV GGNNCC 2 cut(s) 278, 483
NspV TTCGAA 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 558
PciSI GCTCTTC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 243, 452
PflMI CCANNNNNTGG 1 cut(s) 35
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 514
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 278, 483
PspPI GGNCC 2 cut(s) 276, 335
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 558
SapI GCTCTTC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 2 cut(s) 481, 562
Sau96I GGNCC 2 cut(s) 276, 335
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 2 cut(s) 139, 475
SfuI TTCGAA 1 cut(s) 127
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 7 cut(s) 85, 117, 129, 155, 227, 263, 458
SsiI CCGC 4 cut(s) 207, 259, 312, 338
SspMI CTAG 2 cut(s) 188, 434
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 2 cut(s) 321, 438
TaqI TCGA 5 cut(s) 127, 192, 199, 241, 569
TasI AATT 7 cut(s) 85, 117, 129, 155, 227, 263, 458
TfiI GAWTC 2 cut(s) 243, 452
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 421
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 1 cut(s) 421
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 2 cut(s) 188, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.