Rh6BG350700

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013616
Physical Location & Seq
Reverse (-)
58142654 .. 58145080
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG350700.1

Sequence Viewer

Length: 312 bp
ATGTCTCAGAGAGAGGAGCGCATTGAGCTTAAGTTCAGGATTTATGATGGAACAGATATTGGGCACAGTTCTTATGCGCCTTCCATGACTGTAGCTACTCTTAAGAAAAGGCTACTTTCTGAGTGGCCTCAAGCCAAAACAGTGACACCCAAGACAGTGAATGAAGTGAAACTGATACATGGTGGGAGAGTTTTAGAGAATAGTAAGACACTTGCTGATTCCAAAATAATGTCCTTTGGTAACTTACCTGGTGGTGTTATAACCATGCATGTGGTAGTTCAGCCTACTGTTGCTAAAGAGAAGAAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

9.79

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 6 - 102 2.6e-33 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AflII CTTAAG 2 cut(s) 29, 101
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 28, 95
AluI AGCT 2 cut(s) 28, 95
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 125
AspLEI GCGC 2 cut(s) 21, 79
BaeGI GKGCMC 1 cut(s) 66
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 90
BfrI CTTAAG 2 cut(s) 29, 101
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 20, 111
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 66
BshFI GGCC 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 66
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 19, 112
BspTI CTTAAG 2 cut(s) 29, 101
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 5 cut(s) 68, 91, 142, 157, 289
BstAFI CTTAAG 2 cut(s) 29, 101
BstDEI CTNAG 2 cut(s) 6, 120
BstHHI GCGC 2 cut(s) 21, 79
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 271
BsuRI GGCC 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 147, 162
CfoI GCGC 2 cut(s) 21, 79
CsiI ACCWGGT 1 cut(s) 247
CviAII CATG 4 cut(s) 85, 179, 265, 269
CviJI RGCY 6 cut(s) 28, 95, 112, 127, 134, 283
CviKI_1 RGCY 6 cut(s) 28, 95, 112, 127, 134, 283
DdeI CTNAG 2 cut(s) 6, 120
EcoRII CCWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 270
FaeI CATG 4 cut(s) 88, 182, 268, 272
FaiI YATR 7 cut(s) 45, 75, 86, 180, 260, 266, 270
FatI CATG 4 cut(s) 84, 178, 264, 268
GlaI GCGC 2 cut(s) 20, 78
HaeIII GGCC 1 cut(s) 127
HhaI GCGC 2 cut(s) 21, 79
Hin1II CATG 4 cut(s) 88, 182, 268, 272
Hin6I GCGC 2 cut(s) 19, 77
HinP1I GCGC 2 cut(s) 19, 77
HinfI GANTC 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 9, 121
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 5 cut(s) 68, 91, 142, 157, 289
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 6, 120
Hsp92II CATG 4 cut(s) 88, 182, 268, 272
HspAI GCGC 2 cut(s) 19, 77
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 22, 234, 261
MabI ACCWGGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 142, 239
MhlI GDGCHC 1 cut(s) 66
MnlI CCTC 2 cut(s) 7, 138
Mph1103I ATGCAT 1 cut(s) 270
MseI TTAA 2 cut(s) 30, 102
MslI CAYNNNNRTG 1 cut(s) 269
MspCI CTTAAG 2 cut(s) 29, 101
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 88, 182, 268, 272
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 1 cut(s) 272
PfeI GAWTC 1 cut(s) 218
PsiI TTATAA 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 2 cut(s) 30, 102
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 66
SetI ASST 4 cut(s) 30, 97, 250, 310
SexAI ACCWGGT 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 29, 101, 129
SmoI CTYRAG 3 cut(s) 29, 101, 129
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 5 cut(s) 68, 91, 142, 157, 289
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 30, 102
Tru9I TTAA 2 cut(s) 30, 102
TscAI CASTG 2 cut(s) 147, 162
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 147, 162
Vha464I CTTAAG 2 cut(s) 29, 101
XceI RCATGY 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.