RLG00000011987

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013616
Physical Location & Seq
Forward (+)
14351662 .. 14352745
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011987

Sequence Viewer

Length: 477 bp
ATGAGGTGCTTACTTGGCTGGATTGGTTCTGATTCTGCTGATTCAGATGTAAAGCCTTTGATTGTTCTTGATCGATTTCGTGAATTCGCTGAGGTGGGTTGGGGGAGATTGGATTTTTTGAGTGGGAATTGTGTGGTTAGGGTTTCAATTTGGGAGTGGAGGGGGAGGGATATTGGGCACAGTTCTTATGCGCCTTCCATGACTGTAGCTACTCTTAAGAAAAGGCTACTTTCTGAGTGGCCTCAAGCCAAAACAGTGACACCCAAGACAGTGAATGAAGTGAAACTGATACATGGTGGGAGAATTTTAGAGAATAGTAAGACACTTGCTGATTCCAAAATAATGTCCTTTGGTAACTTACCTGGTGGTGTTATAACCATGCATGTGGTAGTTCAGCCTACTGTTGCTAAAGAGAAGAAAGCTAAAAACCAGAAGGATATGCAAAAGATGAATTCATGCTCGTGTACCATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

159

Amino Acids

17.59

Weight (kDa)

9.54

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 53 - 156 2.1e-32 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AcsI RAATTY 3 cut(s) 83, 303, 451
AfaI GTAC 1 cut(s) 466
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 147
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 2 cut(s) 209, 422
AluI AGCT 2 cut(s) 209, 422
AoxI GGCC 1 cut(s) 239
ApoI RAATTY 3 cut(s) 83, 303, 451
AspLEI GCGC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 180
BauI CACGAG 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 73
BseBI CCWGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 73
BseMII CTCAG 2 cut(s) 81, 225
BseSI GKGCMC 1 cut(s) 180
BshFI GGCC 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 73
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 2 cut(s) 82, 226
BspDI ATCGAT 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 215
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 460
Bst2BI CACGAG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 5 cut(s) 182, 205, 256, 271, 403
BstAFI CTTAAG 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 90, 234
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 73
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 261, 276
CfoI GCGC 1 cut(s) 193
ClaI ATCGAT 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 1 cut(s) 465
CviAII CATG 5 cut(s) 199, 293, 379, 383, 456
CviJI RGCY 8 cut(s) 18, 55, 209, 226, 241, 248, 397, 422
CviKI_1 RGCY 8 cut(s) 18, 55, 209, 226, 241, 248, 397, 422
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 2 cut(s) 90, 234
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EcoRI GAATTC 2 cut(s) 83, 451
EcoRII CCWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 384
FaeI CATG 5 cut(s) 202, 296, 382, 386, 459
FaiI YATR 8 cut(s) 189, 200, 294, 374, 380, 384, 440, 457
FatI CATG 5 cut(s) 198, 292, 378, 382, 455
GlaI GCGC 1 cut(s) 192
HaeIII GGCC 1 cut(s) 241
HhaI GCGC 1 cut(s) 193
Hin1II CATG 5 cut(s) 202, 296, 382, 386, 459
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 3 cut(s) 32, 41, 332
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 3 cut(s) 31, 46, 235
Hpy188III TCNNGA 2 cut(s) 68, 80
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 2 cut(s) 204, 427
HpyCH4III ACNGT 5 cut(s) 182, 205, 256, 271, 403
HpyCH4V TGCA 2 cut(s) 382, 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 90, 234
Hsp92II CATG 5 cut(s) 202, 296, 382, 386, 459
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 4, 348, 375, 443
MabI ACCWGGT 1 cut(s) 361
MaeIII GTNAC 2 cut(s) 256, 353
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 5 cut(s) 83, 127, 147, 303, 451
MnlI CCTC 4 cut(s) 85, 153, 159, 252
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 2 cut(s) 216, 475
MslI CAYNNNNRTG 2 cut(s) 383, 460
MspCI CTTAAG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 1 cut(s) 70
NlaIII CATG 5 cut(s) 202, 296, 382, 386, 459
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 384
NspI RCATGY 1 cut(s) 386
PfeI GAWTC 3 cut(s) 32, 41, 332
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 2 cut(s) 383, 460
SaqAI TTAA 2 cut(s) 216, 475
Sau3AI GATC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 8, 96, 211, 364, 424
SexAI ACCWGGT 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 383, 460
SmlI CTYRAG 2 cut(s) 215, 243
SmoI CTYRAG 2 cut(s) 215, 243
Sse9I AATT 5 cut(s) 83, 127, 147, 303, 451
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 5 cut(s) 182, 205, 256, 271, 403
TaqI TCGA 1 cut(s) 73
TasI AATT 5 cut(s) 83, 127, 147, 303, 451
TfiI GAWTC 3 cut(s) 32, 41, 332
Tru1I TTAA 2 cut(s) 216, 475
Tru9I TTAA 2 cut(s) 216, 475
TscAI CASTG 2 cut(s) 261, 276
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 291, 444, 464
TspRI CASTG 2 cut(s) 261, 276
Vha464I CTTAAG 1 cut(s) 215
XapI RAATTY 3 cut(s) 83, 303, 451
XceI RCATGY 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.