Rh6CG357700

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013616
Physical Location & Seq
Reverse (-)
54656801 .. 54657875
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG357700.1

Sequence Viewer

Length: 447 bp
ATGAGGTGCTTACTTGGCTGGATTGGTTCTGATTCTGCTGGTTCAGATGTAAAGCCTTTGATTGTTCTTGATCGATTTCGTGAATTCGCTGAGAGAGAGGAGCGCATTGAGCTTAAGTTCAGGATTTATGATGGAACAGATATTGGGCACAGTTCTTATGCGCCTTCCATGACTGTAGCTACTCTTAAGAAAAGGCTACTTTCTGAGTGGCCTCAAGCCAAAACAGTGACACCCAAGACAGTGAATGAAGTGAAACTGATACATGGTGGGAGAGTTTTAGAGAATAGTAAGACACTTGCTGATTCCAAAATAATGTCCTTTGGTAACTTACCTGGTGGTGTTATAACCATGCATGTGGTAGTTCAGCCTACTGTTGCTAAAGAGAAAAAAGCTAAAAACCAGAAGGATATGCAAAAGATGAATTCATGCTCGTGTACCATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

148

Amino Acids

16.49

Weight (kDa)

9.45

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 34 - 146 1.8e-37 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AcsI RAATTY 2 cut(s) 83, 421
AfaI GTAC 1 cut(s) 436
AflII CTTAAG 2 cut(s) 113, 185
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 3 cut(s) 112, 179, 392
AluI AGCT 3 cut(s) 112, 179, 392
AoxI GGCC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 83, 421
AspLEI GCGC 2 cut(s) 105, 163
BaeGI GKGCMC 1 cut(s) 150
BauI CACGAG 1 cut(s) 430
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 174
BfrI CTTAAG 2 cut(s) 113, 185
Bme1390I CCNGG 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 73
BseBI CCWGG 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 73
BseMII CTCAG 2 cut(s) 81, 195
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 150
BshFI GGCC 1 cut(s) 211
BshVI ATCGAT 1 cut(s) 73
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 82, 196
BspDI ATCGAT 1 cut(s) 73
BspTI CTTAAG 2 cut(s) 113, 185
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 5 cut(s) 152, 175, 226, 241, 373
BstAFI CTTAAG 2 cut(s) 113, 185
BstDEI CTNAG 2 cut(s) 90, 204
BstHHI GCGC 2 cut(s) 105, 163
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 15, 109
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 355
Bsu15I ATCGAT 1 cut(s) 73
BsuRI GGCC 1 cut(s) 211
BsuTUI ATCGAT 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 231, 246
CfoI GCGC 2 cut(s) 105, 163
ClaI ATCGAT 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 1 cut(s) 435
CviAII CATG 5 cut(s) 169, 263, 349, 353, 426
CviJI RGCY 9 cut(s) 18, 55, 112, 179, 196, 211, 218, 367, 392
CviKI_1 RGCY 9 cut(s) 18, 55, 112, 179, 196, 211, 218, 367, 392
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 2 cut(s) 90, 204
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EcoRI GAATTC 2 cut(s) 83, 421
EcoRII CCWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 354
FaeI CATG 5 cut(s) 172, 266, 352, 356, 429
FaiI YATR 9 cut(s) 129, 159, 170, 264, 344, 350, 354, 410, 427
FatI CATG 5 cut(s) 168, 262, 348, 352, 425
GlaI GCGC 2 cut(s) 104, 162
HaeIII GGCC 1 cut(s) 211
HhaI GCGC 2 cut(s) 105, 163
Hin1II CATG 5 cut(s) 172, 266, 352, 356, 429
Hin6I GCGC 2 cut(s) 103, 161
HinP1I GCGC 2 cut(s) 103, 161
HinfI GANTC 2 cut(s) 32, 302
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 3 cut(s) 31, 46, 205
Hpy188III TCNNGA 3 cut(s) 68, 80, 121
Hpy8I GTNNAC 1 cut(s) 435
HpyAV CCTTC 2 cut(s) 174, 397
HpyCH4III ACNGT 5 cut(s) 152, 175, 226, 241, 373
HpyCH4V TGCA 2 cut(s) 352, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 109
HpyF3I CTNAG 2 cut(s) 90, 204
Hsp92II CATG 5 cut(s) 172, 266, 352, 356, 429
HspAI GCGC 2 cut(s) 103, 161
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 4, 24, 106, 318, 345, 413
MabI ACCWGGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 226, 323
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 83, 421
MnlI CCTC 2 cut(s) 91, 222
Mph1103I ATGCAT 1 cut(s) 354
MseI TTAA 3 cut(s) 114, 186, 445
MslI CAYNNNNRTG 2 cut(s) 353, 430
MspCI CTTAAG 2 cut(s) 113, 185
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 15, 109
NdeII GATC 1 cut(s) 70
NlaIII CATG 5 cut(s) 172, 266, 352, 356, 429
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 354
NspI RCATGY 1 cut(s) 356
PfeI GAWTC 2 cut(s) 32, 302
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 353, 430
SaqAI TTAA 3 cut(s) 114, 186, 445
Sau3AI GATC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 150
SetI ASST 5 cut(s) 8, 114, 181, 334, 394
SexAI ACCWGGT 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 353, 430
SmlI CTYRAG 3 cut(s) 113, 185, 213
SmoI CTYRAG 3 cut(s) 113, 185, 213
Sse9I AATT 2 cut(s) 83, 421
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 5 cut(s) 152, 175, 226, 241, 373
TaqI TCGA 1 cut(s) 73
TasI AATT 2 cut(s) 83, 421
TfiI GAWTC 2 cut(s) 32, 302
Tru1I TTAA 3 cut(s) 114, 186, 445
Tru9I TTAA 3 cut(s) 114, 186, 445
TscAI CASTG 2 cut(s) 231, 246
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 261, 414, 434
TspRI CASTG 2 cut(s) 231, 246
Vha464I CTTAAG 2 cut(s) 113, 185
XapI RAATTY 2 cut(s) 83, 421
XceI RCATGY 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.