pycom01g01660

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0008514
Physical Location & Seq
Forward (+)
1549115 .. 1556941
7827 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1206 bp
ATGGCTATAAATTGGTTTAGAGCAGTGCCCAAATTACGACATTCAGAGCCCGAATTCATCAGGTCACACGCATTCTCGCTTTCTTTCTCACCTACCAAAAGGGCCTTCTCTGGAAGTGGAAGAATAGCAACAGCTTTATCTTCTTCTTCTTCTTCAATGTCCTACGCAAAGGAGCTCGCTGCTGCCAAAAAAGCTGCCTCGCTCGCTGCTCTCCTCTGCCAGAAGGTGCAAAAGGCCCTTTTGCAGTCAGACGTTCATTCAAAATCAGATAAAAGTCCAGTTACAGTGGCGGATTACGGTTCACAGGCTATTGTGAGTTTGGTACTGGAAAGGGAAATTCCTTGTGAATCGTTCTCGCTTGTGGCCGAGGAGGACTCGGGAGATCTTCGGAAGGAAAGTGGGCAGGAAACACTAGAGCGCATAACAAAACTTGTTAATGATACTCTTGCCAATAGTGACTTTTCCAGTGTTTCTAATTTAACCACTGAAGATGTGCTCAGAGCTATTGACAATGGGAAATCTGAAGGTGGTTCTAGCGGCCAGCACTGGGTTCTAGATCCCATAGATGGAACCAAAGGGTTTGTTAGAGGAGATCAATATGCCATAGCATTGGGATTGCTGGATGAAGGAAAAGTTGTGTTGGGTGTCCTGGCCTGTCCGAATCTTCCTCTCGCATCCATTAGTGGCAATAATCAGCATTCTTCATATGATAAAGTTGGTTGTCTTTTCTTTGCTACAGTTGGTACCGGAACATATATGCAGCCATTGGATGGTTCTTCCCTGATAAAAGTGCATGTTAGTGCTACTGAAAATCCTGAAGAAGCTTCGTTTTTCGAATCTTTTGAAGCAGCACACTCCTTGCATGACTTGTCTAGCAGCATTGCTCAGAAACTTGGTGTCAAAGCCCCGCCAGTAAGAATTGACAGCCAGGCAAAGTATGGAGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGTGAAAAAATATGGGATCATGCTGCTGGGTGCATTGTCGTGACTGAAGCTGGGGGTGTGGTCGCAGATGCTGCGGGGAACCCGTTGGATTTCTCAAAGGGGAAGTATCTTGATCTTGATACGGGCATAATCGTCACAAATCAGAAACTAATGCCATTACTATTGAAGGCAGTTAAAGAATCCCTGGACGAAAAAGTTTCATCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

402

Amino Acids

42.81

Weight (kDa)

5.96

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 90 - 393 4.6e-49 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 743
AccB7I CCANNNNNTGG 1 cut(s) 770
AciI CCGC 4 cut(s) 290, 537, 908, 1070
AclWI GGATC 2 cut(s) 551, 1020
AcoI YGGCCR 2 cut(s) 363, 538
AcsI RAATTY 2 cut(s) 53, 336
AcuI CTGAAG 4 cut(s) 507, 543, 837, 1062
AfaI GTAC 2 cut(s) 324, 745
AfiI CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
AgsI TTSAA 4 cut(s) 156, 261, 845, 1162
AjnI CCWGG 3 cut(s) 648, 927, 1179
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 6 cut(s) 134, 175, 194, 503, 824, 1046
AluI AGCT 6 cut(s) 134, 175, 194, 503, 824, 1046
Alw21I GWGCWC 3 cut(s) 177, 498, 946
AlwI GGATC 2 cut(s) 551, 1020
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 5 cut(s) 102, 234, 363, 538, 651
ApeKI GCWGC 9 cut(s) 179, 182, 194, 206, 760, 848, 876, 1019, 1067
ApoI RAATTY 2 cut(s) 53, 336
Asp718I GGTACC 1 cut(s) 743
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 102, 235
AsuHPI GGTGA 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 834
AvaI CYCGRG 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 2 cut(s) 51, 177
Bbv12I GWGCWC 3 cut(s) 177, 498, 946
BbvI GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
BccI CCATC 3 cut(s) 560, 764, 953
BciT130I CCWGG 3 cut(s) 650, 929, 1181
BfaI CTAG 4 cut(s) 413, 534, 554, 873
BfmI CTRYAG 1 cut(s) 735
BglII AGATCT 1 cut(s) 382
Bme1390I CCNGG 3 cut(s) 650, 929, 1181
BmeT110I CYCGRG 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 102, 235
BmiI GGNNCC 3 cut(s) 571, 745, 1076
BmrFI CCNGG 3 cut(s) 650, 929, 1181
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 683, 1054
BmuI ACTGGG 1 cut(s) 556
BplI GAGNNNNNCTC 2 cut(s) 359, 391
Bpu14I TTCGAA 1 cut(s) 834
BsaJI CCNNGG 2 cut(s) 366, 1179
BsaWI WCCGGW 1 cut(s) 746
Bsc4I CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
Bse1I ACTGG 5 cut(s) 278, 330, 465, 551, 911
Bse3DI GCAATG 1 cut(s) 879
BseBI CCWGG 3 cut(s) 650, 929, 1181
BseDI CCNNGG 2 cut(s) 366, 1179
BseGI GGATG 3 cut(s) 628, 674, 775
BseLI CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 2 cut(s) 511, 899
BseNI ACTGG 5 cut(s) 278, 330, 465, 551, 911
BseRI GAGGAG 4 cut(s) 203, 383, 603, 969
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
BseYI CCCAGC 2 cut(s) 1022, 1046
BshFI GGCC 5 cut(s) 104, 236, 365, 540, 653
BshNI GGYRCC 1 cut(s) 743
BsiHKAI GWGCWC 3 cut(s) 177, 498, 946
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 1 cut(s) 747
BslI CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
BsmI GAATGC 2 cut(s) 71, 697
BsnI GGCC 5 cut(s) 104, 236, 365, 540, 653
BsoBI CYCGRG 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 5 cut(s) 30, 51, 177, 498, 946
Bsp143I GATC 5 cut(s) 382, 556, 592, 1012, 1108
BspACI CCGC 4 cut(s) 290, 537, 908, 1070
BspANI GGCC 5 cut(s) 104, 236, 365, 540, 653
BspCNI CTCAG 2 cut(s) 510, 898
BspLI GGNNCC 3 cut(s) 571, 745, 1076
BspPI GGATC 2 cut(s) 551, 1020
BspT104I TTCGAA 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 879
BsrI ACTGG 5 cut(s) 278, 330, 465, 551, 911
BssECI CCNNGG 2 cut(s) 366, 1179
BssMI GATC 5 cut(s) 382, 556, 592, 1012, 1108
Bst2UI CCWGG 3 cut(s) 650, 929, 1181
Bst4CI ACNGT 3 cut(s) 286, 299, 739
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstBI TTCGAA 1 cut(s) 834
BstC8I GCNNGC 3 cut(s) 177, 204, 542
BstDEI CTNAG 2 cut(s) 497, 885
BstF5I GGATG 3 cut(s) 628, 674, 775
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 5 cut(s) 385, 559, 595, 1015, 1111
BstMBI GATC 5 cut(s) 382, 556, 592, 1012, 1108
BstMWI GCNNNNNNNGC 3 cut(s) 191, 203, 1067
BstNI CCWGG 3 cut(s) 650, 929, 1181
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 3 cut(s) 648, 927, 1179
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
BstX2I RGATCY 2 cut(s) 382, 556
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 2 cut(s) 382, 556
BsuRI GGCC 5 cut(s) 104, 236, 365, 540, 653
BtsCI GGATG 3 cut(s) 628, 674, 775
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 5 cut(s) 30, 291, 472, 483, 544
Cac8I GCNNGC 3 cut(s) 177, 204, 542
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 102, 235
Csp6I GTAC 2 cut(s) 323, 744
CviAII CATG 3 cut(s) 794, 863, 1016
CviQI GTAC 2 cut(s) 323, 744
DdeI CTNAG 2 cut(s) 497, 885
DpnI GATC 5 cut(s) 384, 558, 594, 1014, 1110
DpnII GATC 5 cut(s) 382, 556, 592, 1012, 1108
EaeI YGGCCR 2 cut(s) 363, 538
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 51, 177
Eco32I GATATC 1 cut(s) 995
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 4 cut(s) 507, 543, 837, 1062
Eco88I CYCGRG 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 2 cut(s) 102, 235
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 648, 927, 1179
EcoRV GATATC 1 cut(s) 995
EcoT38I GRGCYC 2 cut(s) 51, 177
FaeI CATG 3 cut(s) 797, 866, 1019
FatI CATG 3 cut(s) 793, 862, 1015
FauI CCCGC 2 cut(s) 915, 1063
FauNDI CATATG 1 cut(s) 706
FokI GGATG 3 cut(s) 635, 661, 782
FriOI GRGCYC 2 cut(s) 51, 177
FspBI CTAG 4 cut(s) 413, 534, 554, 873
GlaI GCGC 1 cut(s) 419
GsaI CCCAGC 2 cut(s) 1026, 1050
HaeIII GGCC 5 cut(s) 104, 236, 365, 540, 653
HapII CCGG 1 cut(s) 747
HhaI GCGC 1 cut(s) 420
Hin1II CATG 3 cut(s) 797, 866, 1019
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 5 cut(s) 347, 374, 661, 836, 1175
HpaII CCGG 1 cut(s) 747
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 302
Hpy188III TCNNGA 9 cut(s) 111, 378, 554, 815, 951, 998, 1036, 1106, 1112
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 6 cut(s) 115, 217, 385, 518, 620, 1156
HpyCH4III ACNGT 3 cut(s) 286, 299, 739
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 229, 244, 760, 793, 862, 1029
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 203, 1067
HpyF3I CTNAG 2 cut(s) 497, 885
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 3 cut(s) 797, 866, 1019
HspAI GCGC 1 cut(s) 418
KpnI GGTACC 1 cut(s) 747
Kzo9I GATC 5 cut(s) 382, 556, 592, 1012, 1108
LmnI GCTCC 3 cut(s) 172, 941, 962
Lsp1109I GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
LweI GCATC 2 cut(s) 683, 1054
MaeI CTAG 4 cut(s) 413, 534, 554, 873
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 5 cut(s) 63, 280, 455, 1036, 1129
MalI GATC 5 cut(s) 384, 558, 594, 1014, 1110
MboI GATC 5 cut(s) 382, 556, 592, 1012, 1108
MflI RGATCY 2 cut(s) 382, 556
MhlI GDGCHC 5 cut(s) 30, 51, 177, 498, 946
MluCI AATT 6 cut(s) 10, 32, 53, 336, 475, 918
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 1062
MnlI CCTC 7 cut(s) 208, 224, 361, 364, 581, 678, 947
MseI TTAA 3 cut(s) 435, 479, 1170
MslI CAYNNNNRTG 2 cut(s) 798, 1034
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 3 cut(s) 650, 929, 1181
Mva1269I GAATGC 2 cut(s) 71, 697
MvaI CCWGG 3 cut(s) 650, 929, 1181
MwoI GCNNNNNNNGC 3 cut(s) 191, 203, 1067
NdeI CATATG 1 cut(s) 706
NdeII GATC 5 cut(s) 382, 556, 592, 1012, 1108
NlaIII CATG 3 cut(s) 797, 866, 1019
NlaIV GGNNCC 3 cut(s) 571, 745, 1076
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 4 cut(s) 63, 455, 1036, 1129
NspI RCATGY 1 cut(s) 797
NspV TTCGAA 1 cut(s) 834
PctI GAATGC 2 cut(s) 71, 697
PfeI GAWTC 4 cut(s) 347, 661, 836, 1175
PflMI CCANNNNNTGG 1 cut(s) 770
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 648, 927, 1179
PspFI CCCAGC 2 cut(s) 1022, 1046
PspGI CCWGG 3 cut(s) 648, 927, 1179
PspN4I GGNNCC 3 cut(s) 571, 745, 1076
PspPI GGNCC 2 cut(s) 102, 235
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 2 cut(s) 382, 556
RsaI GTAC 2 cut(s) 324, 745
RsaNI GTAC 2 cut(s) 323, 744
RseI CAYNNNNRTG 2 cut(s) 798, 1034
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 435, 479, 1170
Sau3AI GATC 5 cut(s) 382, 556, 592, 1012, 1108
Sau96I GGNCC 2 cut(s) 102, 235
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 650, 929, 1181
SduI GDGCHC 5 cut(s) 30, 51, 177, 498, 946
SfaNI GCATC 2 cut(s) 683, 1054
SfcI CTRYAG 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 834
SmiMI CAYNNNNRTG 2 cut(s) 798, 1034
Sse9I AATT 6 cut(s) 10, 32, 53, 336, 475, 918
SsiI CCGC 4 cut(s) 290, 537, 908, 1070
SspMI CTAG 4 cut(s) 413, 534, 554, 873
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 648, 927, 1179
TaaI ACNGT 3 cut(s) 286, 299, 739
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 834
TasI AATT 6 cut(s) 10, 32, 53, 336, 475, 918
TauI GCSGC 1 cut(s) 540
TfiI GAWTC 4 cut(s) 347, 661, 836, 1175
Tru1I TTAA 3 cut(s) 435, 479, 1170
Tru9I TTAA 3 cut(s) 435, 479, 1170
TscAI CASTG 5 cut(s) 30, 291, 472, 490, 551
TseFI GTSAC 4 cut(s) 63, 455, 1036, 1129
TseI GCWGC 9 cut(s) 179, 182, 194, 206, 760, 848, 876, 1019, 1067
Tsp45I GTSAC 4 cut(s) 63, 455, 1036, 1129
TspDTI ATGAA 5 cut(s) 46, 245, 639, 693, 1185
TspRI CASTG 5 cut(s) 30, 291, 472, 490, 551
Van91I CCANNNNNTGG 1 cut(s) 770
XapI RAATTY 2 cut(s) 53, 336
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 935
XspI CTAG 4 cut(s) 413, 534, 554, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.