Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013158

Physical Location & Seq

Genomic Coordinates Forward (+)

4863806 .. 4865143

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCGCCTTTTCCCTCCAGACATCGACCTCCAGCATTGCCCGTCCCAGTTTCGAAACCCGAATCCCCGGATCCGATTTGGGTTCAAACCCAAAATCCATATGTTTCCCTTGTCAGTCTCGTTTGCTTCCTCTCACGTGTCGGAGCAACAGTAAGAGTAGATCAAGAGGAGGAGTTGTGATGGCGGTGGCAGTGACTGGCAATGACCAGTCCCAAGTGGAAGTCGACGTCTCTCTGAGCCCACGAGTCAACTCCGTCAAGCCTTCGAAGACAGTCGCCATTACTGACCAGGCCACGGCTCTCGTGCAAGCCGGAGTGCCCGTCATTCGATTAGCTGCTGGCGAACCCGATTTCGATACCCCTTCCATCATAGCTGAGGCGGGTATCAATGCGATTCGCGAAGGCTTCACCAGGTACACACCAAATGCAGGGACTTTGGAGCTGCGCCAAGCAATTTGTCATAAGCTCAAAGAGGAGAATGGGATCTCTTACACACCGGATCAGATTGTAGTTAGCAATGGAGCCAAGCAGAGCATTGTTCAAGCTGTGCTTGCAGTTTGTTCCCCAGGGGATGAGGTTATAATTCCAGCTCCATTTTGGGTGAGTTACCCTGAAATGGCAAGGATGGCCGATGCAACTCCTGTGATTCTTCCAACGAGCATCTCCAATGATTTTCTCTTAAGCCGGTCCGCCGATCGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004069 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016769 GO:0019438 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0033853 GO:0033854 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

235

Amino Acids

24.79

Weight (kDa)

6.59

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	107 - 225	8.1e-22	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22250 AT2G22250 AT2G22250
fragaria_vesca	FvH4_1g21500
malus_domestica	MD01G1024400.v1.1 MD15G1329000.v1.1
prunus_persica	Prupe.6G179700_v2.0.a1
pyrus_communis	pycom01g05210 pycom01g05220 pycom15g29680 pycom15g29690 pycom15g29700
rosa_chinensis	RchiOBHm_Chr2g0115381
rosa_laevigata	RLG00000018181
rosa_multiflora	Rmu_sc0001897.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130870
rosa_rugosa	Rorug02G0196000
rosa_wichuraiana	Rw2G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AatII	GACGTC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	399
AciI	CCGC	4 cut(s)	6, 185, 380, 690
AclWI	GGATC	5 cut(s)	66, 79, 491, 507, 693
AcoI	YGGCCR	2 cut(s)	3, 627
AcvI	CACGTG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	295, 428, 616
AflII	CTTAAG	1 cut(s)	679
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	87, 542
AjnI	CCWGG	3 cut(s)	288, 410, 565
AluBI	AGCT	6 cut(s)	335, 374, 442, 466, 545, 590
AluI	AGCT	6 cut(s)	335, 374, 442, 466, 545, 590
Alw26I	GTCTC	2 cut(s)	123, 235
AlwI	GGATC	5 cut(s)	66, 79, 491, 507, 693
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	3 cut(s)	3, 291, 627
ApeKI	GCWGC	2 cut(s)	335, 442
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	687
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	400, 613
AsuII	TTCGAA	2 cut(s)	54, 266
AvaII	GGWCC	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	242
BauI	CACGAG	2 cut(s)	243, 302
BbrPI	CACGTG	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	322, 429
BccI	CCATC	3 cut(s)	175, 374, 619
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	3 cut(s)	290, 412, 567
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	123, 235
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	3 cut(s)	6, 336, 443
BlsI	GCNGC	3 cut(s)	7, 337, 444
Bme1390I	CCNGG	4 cut(s)	69, 290, 412, 567
Bme18I	GGWCC	1 cut(s)	687
BmgT120I	GGNCC	1 cut(s)	687
BmiI	GGNNCC	2 cut(s)	73, 523
BmrFI	CCNGG	4 cut(s)	69, 290, 412, 567
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	622, 669
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	2 cut(s)	54, 266
BpuMI	CCSGG	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	4 cut(s)	67, 294, 565, 566
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 162, 166, 192, 306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 428, 616
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	3 cut(s)	48, 202, 208
Bse3DI	GCAATG	3 cut(s)	36, 208, 523
BseBI	CCWGG	3 cut(s)	290, 412, 567
BseCI	ATCGAT	1 cut(s)	697
BseDI	CCNNGG	4 cut(s)	67, 294, 565, 566
BseGI	GGATG	2 cut(s)	577, 630
BseLI	CCNNNNNNNGG	3 cut(s)	295, 428, 616
BseMI	GCAATG	3 cut(s)	36, 208, 523
BseMII	CTCAG	2 cut(s)	227, 366
BseNI	ACTGG	3 cut(s)	48, 202, 208
BseRI	GAGGAG	3 cut(s)	183, 186, 488
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	322, 429
Bsh1236I	CGCG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	3 cut(s)	5, 293, 629
BshVI	ATCGAT	1 cut(s)	697
BsiEI	CGRYCG	1 cut(s)	697
BsiSI	CCGG	4 cut(s)	69, 312, 497, 685
BslFI	GGGAC	3 cut(s)	30, 196, 445
BslI	CCNNNNNNNGG	3 cut(s)	295, 428, 616
BsmAI	GTCTC	2 cut(s)	123, 235
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	30, 196, 445
BsnI	GGCC	3 cut(s)	5, 293, 629
Bsp119I	TTCGAA	2 cut(s)	54, 266
Bsp1286I	GDGCHC	2 cut(s)	242, 321
Bsp143I	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	4 cut(s)	6, 185, 380, 690
BspANI	GGCC	3 cut(s)	5, 293, 629
BspCNI	CTCAG	2 cut(s)	228, 367
BspDI	ATCGAT	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	73, 523
BspPI	GGATC	5 cut(s)	66, 79, 491, 507, 693
BspT104I	TTCGAA	2 cut(s)	54, 266
BspTI	CTTAAG	1 cut(s)	679
BsrDI	GCAATG	3 cut(s)	36, 208, 523
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	48, 202, 208
BssAI	RCCGGY	1 cut(s)	684
BssECI	CCNNGG	4 cut(s)	67, 294, 565, 566
BssMI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	2 cut(s)	243, 302
Bst2BI	CACGAG	2 cut(s)	243, 302
Bst2UI	CCWGG	3 cut(s)	290, 412, 567
Bst4CI	ACNGT	2 cut(s)	152, 274
BstACI	GRCGYC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	679
BstBAI	YACGTR	1 cut(s)	138
BstBI	TTCGAA	2 cut(s)	54, 266
BstC8I	GCNNGC	3 cut(s)	309, 340, 552
BstDEI	CTNAG	2 cut(s)	236, 375
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	577, 630
BstFNI	CGCG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	6 cut(s)	74, 164, 486, 502, 697, 701
BstMAI	GTCTC	2 cut(s)	123, 235
BstMBI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 626
BstNI	CCWGG	3 cut(s)	290, 412, 567
BstSCI	CCNGG	4 cut(s)	67, 288, 410, 565
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	322, 429
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	71, 483
BstYI	RGATCY	2 cut(s)	71, 483
Bsu15I	ATCGAT	1 cut(s)	697
BsuRI	GGCC	3 cut(s)	5, 293, 629
BsuTUI	ATCGAT	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	577, 630
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BtuMI	TCGCGA	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	309, 340, 552
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	687
ClaI	ATCGAT	1 cut(s)	697
CpoI	CGGWCCG	1 cut(s)	687
CsiI	ACCWGGT	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	415
CspI	CGGWCCG	1 cut(s)	687
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	236, 375
DpnI	GATC	6 cut(s)	73, 163, 485, 501, 696, 700
DpnII	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
EaeI	YGGCCR	2 cut(s)	3, 627
EciI	GGCGGA	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	687
Eco72I	CACGTG	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	288, 410, 565
EcoT38I	GRGCYC	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	235
FaiI	YATR	5 cut(s)	101, 103, 371, 462, 581
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	3 cut(s)	30, 196, 445
FauI	CCCGC	1 cut(s)	373
FauNDI	CATATG	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	6, 336, 443
FokI	GGATG	2 cut(s)	584, 637
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	6, 336, 443
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	3 cut(s)	6, 336, 443
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	5, 293, 629
HapII	CCGG	4 cut(s)	69, 312, 497, 685
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	2 cut(s)	226, 250
HindII	GTYRAC	2 cut(s)	226, 250
HinfI	GANTC	4 cut(s)	63, 246, 394, 646
HpaII	CCGG	4 cut(s)	69, 312, 497, 685
HphI	GGTGA	2 cut(s)	400, 613
Hpy166II	GTNNAC	3 cut(s)	226, 250, 417
Hpy188I	TCNGA	4 cut(s)	76, 144, 237, 504
Hpy188III	TCNNGA	3 cut(s)	19, 165, 398
Hpy8I	GTNNAC	3 cut(s)	226, 250, 417
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	273, 372, 395
HpyCH4III	ACNGT	2 cut(s)	152, 274
HpyCH4IV	ACGT	2 cut(s)	137, 228
HpyCH4V	TGCA	4 cut(s)	307, 428, 554, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 626
HpyF3I	CTNAG	2 cut(s)	236, 375
HpySE526I	ACGT	2 cut(s)	137, 228
Hsp92I	GRCGYC	1 cut(s)	228
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
LmnI	GCTCC	4 cut(s)	144, 439, 521, 595
Lsp1109I	GCAGC	2 cut(s)	322, 429
LweI	GCATC	2 cut(s)	622, 669
MabI	ACCWGGT	1 cut(s)	410
MaeII	ACGT	2 cut(s)	137, 228
MaeIII	GTNAC	2 cut(s)	193, 605
MalI	GATC	6 cut(s)	73, 163, 485, 501, 696, 700
MboI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
MboII	GAAGA	2 cut(s)	280, 641
MflI	RGATCY	2 cut(s)	71, 483
MhlI	GDGCHC	2 cut(s)	242, 321
MluCI	AATT	2 cut(s)	453, 582
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	122, 677
MnlI	CCTC	8 cut(s)	26, 40, 141, 161, 164, 370, 466, 568
MseI	TTAA	1 cut(s)	680
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	4 cut(s)	69, 312, 497, 685
MspR9I	CCNGG	4 cut(s)	69, 290, 412, 567
MvaI	CCWGG	3 cut(s)	290, 412, 567
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	551, 626
NciI	CCSGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	101
NdeII	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
NlaIV	GGNNCC	2 cut(s)	73, 523
NmuCI	GTSAC	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	399
NspV	TTCGAA	2 cut(s)	54, 266
PasI	CCCWGGG	1 cut(s)	566
PfeI	GAWTC	3 cut(s)	63, 394, 646
PkrI	GCNGC	3 cut(s)	7, 337, 444
Ple19I	CGATCG	1 cut(s)	697
PleI	GAGTC	1 cut(s)	254
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	581
Psp6I	CCWGG	3 cut(s)	288, 410, 565
PspCI	CACGTG	1 cut(s)	138
PspGI	CCWGG	3 cut(s)	288, 410, 565
PspN4I	GGNNCC	2 cut(s)	73, 523
PspPI	GGNCC	1 cut(s)	687
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	71, 483
PvuI	CGATCG	1 cut(s)	697
RruI	TCGCGA	1 cut(s)	399
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
Rsr2I	CGGWCCG	1 cut(s)	687
RsrII	CGGWCCG	1 cut(s)	687
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	3 cut(s)	6, 336, 443
Sau3AI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
Sau96I	GGNCC	1 cut(s)	687
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	4 cut(s)	69, 290, 412, 567
SduI	GDGCHC	2 cut(s)	242, 321
SexAI	ACCWGGT	1 cut(s)	410
SfaNI	GCATC	2 cut(s)	622, 669
SfuI	TTCGAA	2 cut(s)	54, 266
SinI	GGWCC	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	2 cut(s)	453, 582
SsiI	CCGC	4 cut(s)	6, 185, 380, 690
StyD4I	CCNGG	4 cut(s)	67, 288, 410, 565
TaaI	ACNGT	2 cut(s)	152, 274
TaiI	ACGT	2 cut(s)	140, 231
TaqI	TCGA	7 cut(s)	26, 54, 225, 266, 328, 354, 697
TasI	AATT	2 cut(s)	453, 582
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	63, 394, 646
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	335, 442
Tsp45I	GTSAC	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	225
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.