pycom01g05360

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011027
Physical Location & Seq
Forward (+)
5079872 .. 5080793
922 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGGATGTTCGTTTCAGAAGACCTACCACCACCAGAGAATTGAGAGAAAACAGCAGCAGTAGCAGCACAGACGGAGCCAAAGTTATGCAGCAGCCAAGAGCCATAAAAAACCTTCAAGTTGTCTACTATCTCTCAAGAAATGGCCATCTCGAGCATCCCCATTACATGGAAATCACCCACTTTGCCAATCACCCGCTTCGTTTGAGAGATGTAATGGATCGGCTGACTGCTCTTAGAGGCAAAGGCATGCCCGCATTGTACTCTTGGTCTTGCAAAAGGAGCTACAAAAATGGTTATGTGTGGAACGATTTAGCCGAAAACGATATAATTTATCCAGCAGAAGGAGCTGAGTATGTACTCAAGGGATCAGAGCTAGTTGAAGGCTGCTCTGCAGAAAGATTAGATCAACTTCAAATGAGAAGCAACCAACAGATGATGCAGCAGCAAGACTCAAACTTTGGGTCCAAAAGGAGATCTCCACTCGCTCCGACTCGAAGCAGAGGACATCGATCATCATCATCGAGAAGCAGACAAGTATCGGGAGGAGGACGGTCAAGACCAAGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

190

Amino Acids

21.7

Weight (kDa)

10.26

Isoelectric Point (pI)

72.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 39 - 126 3.5e-48 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 166
AccI GTMKAC 1 cut(s) 123
AciI CCGC 2 cut(s) 194, 252
AclWI GGATC 2 cut(s) 225, 373
AcoI YGGCCR 1 cut(s) 142
AfaI GTAC 2 cut(s) 260, 357
AfiI CCNNNNNNNGG 2 cut(s) 166, 341
AgsI TTSAA 3 cut(s) 116, 380, 413
AluBI AGCT 3 cut(s) 282, 347, 373
AluI AGCT 3 cut(s) 282, 347, 373
AlwI GGATC 2 cut(s) 225, 373
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 7 cut(s) 54, 63, 88, 91, 384, 439, 442
ArsI GACNNNNNNTTYG 4 cut(s) 440, 446, 472, 478
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 166, 182
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 462
BalI TGGCCA 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 7 cut(s) 66, 75, 100, 103, 371, 451, 454
BccI CCATC 1 cut(s) 153
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 390
BglII AGATCT 1 cut(s) 473
BisI GCNGC 7 cut(s) 55, 64, 89, 92, 385, 440, 443
BlsI GCNGC 7 cut(s) 56, 65, 90, 93, 386, 441, 444
Bme18I GGWCC 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 2 cut(s) 76, 463
BmsI GCATC 2 cut(s) 163, 426
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 118, 344
Bsa29I ATCGAT 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 514
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 341
Bse8I GATNNNNATC 1 cut(s) 514
BseCI ATCGAT 1 cut(s) 508
BseGI GGATG 2 cut(s) 10, 154
BseJI GATNNNNATC 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 166, 341
BseMII CTCAG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 7 cut(s) 66, 75, 100, 103, 371, 451, 454
BshFI GGCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 166, 341
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 5 cut(s) 217, 365, 403, 473, 509
BspACI CCGC 2 cut(s) 194, 252
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 76, 463
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 2 cut(s) 225, 373
BssMI GATC 5 cut(s) 217, 365, 403, 473, 509
Bst4CI ACNGT 1 cut(s) 552
BstC8I GCNNGC 2 cut(s) 248, 252
BstDEI CTNAG 2 cut(s) 233, 348
BstF5I GGATG 2 cut(s) 10, 154
BstKTI GATC 5 cut(s) 220, 368, 406, 476, 512
BstMBI GATC 5 cut(s) 217, 365, 403, 473, 509
BstMWI GCNNNNNNNGC 4 cut(s) 60, 63, 279, 344
BstNSI RCATGY 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 7 cut(s) 66, 75, 100, 103, 371, 451, 454
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 473
BstYI RGATCY 1 cut(s) 473
Bsu15I ATCGAT 1 cut(s) 508
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 508
BtsCI GGATG 2 cut(s) 10, 154
Cac8I GCNNGC 2 cut(s) 248, 252
Cfr13I GGNCC 1 cut(s) 462
ClaI ATCGAT 1 cut(s) 508
Csp6I GTAC 2 cut(s) 259, 356
CviAII CATG 2 cut(s) 166, 247
CviQI GTAC 2 cut(s) 259, 356
DdeI CTNAG 2 cut(s) 233, 348
DpnI GATC 5 cut(s) 219, 367, 405, 475, 511
DpnII GATC 5 cut(s) 217, 365, 403, 473, 509
EaeI YGGCCR 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 149
FaeI CATG 2 cut(s) 169, 250
FaiI YATR 7 cut(s) 86, 104, 167, 248, 297, 326, 354
FatI CATG 2 cut(s) 165, 246
FauI CCCGC 2 cut(s) 201, 259
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 7 cut(s) 55, 64, 89, 92, 385, 440, 443
FokI GGATG 2 cut(s) 17, 141
Fsp4HI GCNGC 7 cut(s) 55, 64, 89, 92, 385, 440, 443
FspBI CTAG 1 cut(s) 374
GluI GCNGC 7 cut(s) 55, 64, 89, 92, 385, 440, 443
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 2 cut(s) 169, 250
HinfI GANTC 3 cut(s) 449, 490, 564
HphI GGTGA 2 cut(s) 166, 182
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 4 cut(s) 17, 370, 489, 569
Hpy188III TCNNGA 5 cut(s) 135, 149, 522, 540, 555
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 122, 335, 374
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4V TGCA 4 cut(s) 88, 273, 392, 439
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 63, 279, 344
HpyF3I CTNAG 2 cut(s) 233, 348
Hsp92II CATG 2 cut(s) 169, 250
Kzo9I GATC 5 cut(s) 217, 365, 403, 473, 509
LmnI GCTCC 4 cut(s) 74, 279, 344, 490
LpnPI CCDG 2 cut(s) 46, 348
Lsp1109I GCAGC 7 cut(s) 66, 75, 100, 103, 371, 451, 454
LweI GCATC 2 cut(s) 163, 426
MaeI CTAG 1 cut(s) 374
MalI GATC 5 cut(s) 219, 367, 405, 475, 511
MboI GATC 5 cut(s) 217, 365, 403, 473, 509
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 473
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 2 cut(s) 38, 327
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 3 cut(s) 443, 484, 558
MmeI TCCRAC 1 cut(s) 512
MnlI CCTC 4 cut(s) 230, 494, 536, 539
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 60, 63, 279, 344
NdeII GATC 5 cut(s) 217, 365, 403, 473, 509
NlaIII CATG 2 cut(s) 169, 250
NlaIV GGNNCC 2 cut(s) 76, 463
NspI RCATGY 1 cut(s) 250
PaeI GCATGC 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 7 cut(s) 56, 65, 90, 93, 386, 441, 444
PleI GAGTC 3 cut(s) 443, 484, 558
PpsI GAGTC 3 cut(s) 443, 484, 558
PspN4I GGNNCC 2 cut(s) 76, 463
PspPI GGNCC 1 cut(s) 462
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 473
RsaI GTAC 2 cut(s) 260, 357
RsaNI GTAC 2 cut(s) 259, 356
SatI GCNGC 7 cut(s) 55, 64, 89, 92, 385, 440, 443
Sau3AI GATC 5 cut(s) 217, 365, 403, 473, 509
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 3 cut(s) 443, 484, 558
SetI ASST 5 cut(s) 25, 114, 284, 349, 375
SfaNI GCATC 2 cut(s) 163, 426
SfcI CTRYAG 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 462
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 3 cut(s) 133, 149, 359
SmoI CTYRAG 3 cut(s) 133, 149, 359
SphI GCATGC 1 cut(s) 250
Sse9I AATT 2 cut(s) 38, 327
SsiI CCGC 2 cut(s) 194, 252
SspMI CTAG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 552
TaqI TCGA 4 cut(s) 150, 493, 508, 521
TasI AATT 2 cut(s) 38, 327
TatI WGTACW 2 cut(s) 258, 355
TseI GCWGC 7 cut(s) 54, 63, 88, 91, 384, 439, 442
TspGWI ACGGA 1 cut(s) 87
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 462
XceI RCATGY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.