pycom01g07570

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012773
Physical Location & Seq
Forward (+)
8501672 .. 8502841
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
ATGGGTGCTAGTTTATCGGGTGGCGTTTCGGATGGGGAGGGTTTAGTGCAGCCAAGGCTTGGGGATGTACCGGAGAGCTGTGTGGCATTGATTTTGATGCAGATGGACCCGACGGAGATTTGTAAGTTGGCCCGGTTGAACCGGGCGTTTCGGGGTGCTTCCTTGGCCGATTTCATCTGGGAATCCAAGTTGCCGCCGAATTATCGGTTTATTGTAGACAGGGTGTTTGATGAAAGTACTAAGAGCAAGATTTCAGGGAAGAGGGATACCTATGCCAGGCTTTGCAGGTCTAATTCCTTTGATGATGGCACAAAGGTGATTTGGCTTGATAAGCACAAGGGTGGTATTTGTTTGTCGATTTCTTCAAGGGCGTTGTCGATTACTGGGATAGATGATAGGAGGTATTGGAATTTCATAGCAAATGATGAATCCAGATTCCAGACAGTTGCCTATCTCCAACAAATCTGGTGGTTTGAAGTCAATGGGGAGTTTGAGTTTCAATTTCCGTTAGGGAAATATGGCCTGTTCTTTAGGCTCCACCTTGGCAGATCCTTGAAGAGGCTAGGTCGCCGCGTCTGCAACTCCGAGCATGTTCATGGCTGGGACATAAAACCAGTGAGGTTTGAGCTATCAACTTCTAATGGTCACCGTGCTGTATCCCAATGTTACTTGGACAATCCTGGAAACTGGATCAATTACCATGTGGGAGATTTTGTTGTTGACAATCCTCATGATTTGATCAAGATCAAGTACTCGATGACTCAGATCGATTGCACCCACACTAAAGGCGGTGTCTGCGTGGATTCGGTGTTGATATACCCTAGTAGTGTAGCGAAAGAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

282

Amino Acids

31.89

Weight (kDa)

8.37

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 116 - 274 2.1e-38 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61060 AT3G61060
fragaria_vesca FvH4_7g13220
malus_domestica MD01G1050900.v1.1
prunus_persica Prupe.2G156400_v2.0.a1
pyrus_communis pycom01g07570
rosa_chinensis RchiOBHm_Chr1g0352361
rosa_laevigata RLG00000028336
rosa_multiflora Rmu_co8012550.1_g000001 Rmu_sc0002244.1_g000039 Rmu_ssc0000172.1_g000009
rosa_roxburghii Rroxscaffold_4G00302960
rosa_rugosa Rorug01G0227900 Rorug01G0228000
rosa_samantha Rh1BG212400 Rh1DG238800
rosa_wichuraiana Rw1G020910 Rw1G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 573
AciI CCGC 3 cut(s) 194, 571, 789
AclWI GGATC 2 cut(s) 543, 698
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 3 cut(s) 69, 238, 752
AfiI CCNNNNNNNGG 3 cut(s) 59, 276, 558
AgsI TTSAA 5 cut(s) 139, 366, 476, 500, 556
AjnI CCWGG 2 cut(s) 275, 679
AleI CACNNNNGTG 2 cut(s) 314, 339
AluBI AGCT 2 cut(s) 78, 628
AluI AGCT 2 cut(s) 78, 628
AlwI GGATC 2 cut(s) 543, 698
AoxI GGCC 3 cut(s) 129, 165, 520
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 409
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspS9I GGNCC 2 cut(s) 106, 130
AsuC2I CCSGG 2 cut(s) 133, 143
AsuHPI GGTGA 2 cut(s) 328, 638
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 61
BccI CCATC 3 cut(s) 26, 97, 299
BciT130I CCWGG 2 cut(s) 277, 681
BciVI GTATCC 2 cut(s) 259, 667
BclI TGATCA 1 cut(s) 738
BcnI CCSGG 2 cut(s) 133, 143
BfaI CTAG 3 cut(s) 9, 563, 822
BfuAI ACCTGC 1 cut(s) 276
BfuI GTATCC 2 cut(s) 259, 667
BisI GCNGC 3 cut(s) 50, 194, 571
BlsI GCNGC 3 cut(s) 51, 195, 572
BmcAI AGTACT 2 cut(s) 238, 752
Bme1390I CCNGG 4 cut(s) 133, 143, 277, 681
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 106, 130
BmiI GGNNCC 2 cut(s) 108, 536
BmrFI CCNGG 4 cut(s) 133, 143, 277, 681
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 393
BpuMI CCSGG 2 cut(s) 133, 143
Bsa29I ATCGAT 1 cut(s) 768
BsaBI GATNNNNATC 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 53, 162, 541
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 4 cut(s) 479, 509, 699, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 276, 558
Bse1I ACTGG 3 cut(s) 388, 614, 692
Bse8I GATNNNNATC 1 cut(s) 743
BseBI CCWGG 2 cut(s) 277, 681
BseCI ATCGAT 1 cut(s) 768
BseDI CCNNGG 3 cut(s) 53, 162, 541
BseGI GGATG 2 cut(s) 37, 70
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 3 cut(s) 59, 276, 558
BseMII CTCAG 1 cut(s) 776
BseNI ACTGG 3 cut(s) 388, 614, 692
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 600
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 573
BshFI GGCC 3 cut(s) 131, 167, 522
BshVI ATCGAT 1 cut(s) 768
BsiSI CCGG 3 cut(s) 71, 133, 142
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 3 cut(s) 59, 276, 558
BsmFI GGGAC 1 cut(s) 617
BsnI GGCC 3 cut(s) 131, 167, 522
Bsp143I GATC 5 cut(s) 548, 690, 738, 744, 765
BspACI CCGC 3 cut(s) 194, 571, 789
BspANI GGCC 3 cut(s) 131, 167, 522
BspCNI CTCAG 1 cut(s) 775
BspDI ATCGAT 1 cut(s) 768
BspFNI CGCG 1 cut(s) 573
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 2 cut(s) 108, 536
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 543, 698
BsrI ACTGG 3 cut(s) 388, 614, 692
BssECI CCNNGG 3 cut(s) 53, 162, 541
BssMI GATC 5 cut(s) 548, 690, 738, 744, 765
BssT1I CCWWGG 3 cut(s) 53, 162, 541
Bst2UI CCWGG 2 cut(s) 277, 681
Bst4CI ACNGT 2 cut(s) 445, 650
Bst6I CTCTTC 2 cut(s) 254, 551
BstDEI CTNAG 3 cut(s) 240, 762, 843
BstEII GGTNACC 1 cut(s) 644
BstENI CCTNNNNNAGG 2 cut(s) 274, 556
BstF5I GGATG 2 cut(s) 37, 70
BstFNI CGCG 1 cut(s) 573
BstKTI GATC 5 cut(s) 551, 693, 741, 747, 768
BstMBI GATC 5 cut(s) 548, 690, 738, 744, 765
BstMWI GCNNNNNNNGC 5 cut(s) 55, 164, 331, 576, 795
BstNI CCWGG 2 cut(s) 277, 681
BstNSI RCATGY 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 4 cut(s) 131, 141, 275, 679
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
Bsu15I ATCGAT 1 cut(s) 768
BsuI GTATCC 2 cut(s) 259, 667
BsuRI GGCC 3 cut(s) 131, 167, 522
BsuTUI ATCGAT 1 cut(s) 768
BtsCI GGATG 2 cut(s) 37, 70
BtsIMutI CAGTG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 276
CciI TCATGA 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 106, 130
ClaI ATCGAT 1 cut(s) 768
CseI GACGC 1 cut(s) 562
Csp6I GTAC 3 cut(s) 68, 237, 751
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 4 cut(s) 590, 596, 701, 731
CviQI GTAC 3 cut(s) 68, 237, 751
DdeI CTNAG 3 cut(s) 240, 762, 843
DpnI GATC 5 cut(s) 550, 692, 740, 746, 767
DpnII GATC 5 cut(s) 548, 690, 738, 744, 765
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 254, 551
EarI CTCTTC 2 cut(s) 254, 551
Eco130I CCWWGG 3 cut(s) 53, 162, 541
Eco47I GGWCC 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 644
EcoNI CCTNNNNNAGG 2 cut(s) 274, 556
EcoO65I GGTNACC 1 cut(s) 644
EcoRII CCWGG 2 cut(s) 275, 679
EcoT14I CCWWGG 3 cut(s) 53, 162, 541
ErhI CCWWGG 3 cut(s) 53, 162, 541
FaeI CATG 4 cut(s) 593, 599, 704, 734
FaiI YATR 9 cut(s) 273, 416, 519, 591, 597, 608, 702, 732, 817
FaqI GGGAC 1 cut(s) 617
FatI CATG 4 cut(s) 589, 595, 700, 730
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 50, 194, 571
FokI GGATG 2 cut(s) 44, 77
Fsp4HI GCNGC 3 cut(s) 50, 194, 571
FspBI CTAG 3 cut(s) 9, 563, 822
GluI GCNGC 3 cut(s) 50, 194, 571
GsaI CCCAGC 1 cut(s) 604
HaeIII GGCC 3 cut(s) 131, 167, 522
HapII CCGG 3 cut(s) 71, 133, 142
HgaI GACGC 1 cut(s) 562
Hin1II CATG 4 cut(s) 593, 599, 704, 734
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 5 cut(s) 182, 428, 435, 760, 803
HpaII CCGG 3 cut(s) 71, 133, 142
HphI GGTGA 2 cut(s) 328, 638
Hpy166II GTNNAC 2 cut(s) 217, 721
Hpy188I TCNGA 3 cut(s) 31, 586, 765
Hpy188III TCNNGA 4 cut(s) 432, 439, 731, 742
Hpy8I GTNNAC 2 cut(s) 217, 721
Hpy99I CGWCG 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 445, 650
HpyCH4V TGCA 5 cut(s) 49, 100, 285, 579, 774
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 164, 331, 576, 795
HpyF3I CTNAG 3 cut(s) 240, 762, 843
Hsp92II CATG 4 cut(s) 593, 599, 704, 734
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 5 cut(s) 548, 690, 738, 744, 765
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 87
MaeI CTAG 3 cut(s) 9, 563, 822
MaeIII GTNAC 2 cut(s) 644, 665
MalI GATC 5 cut(s) 550, 692, 740, 746, 767
MboI GATC 5 cut(s) 548, 690, 738, 744, 765
MboII GAAGA 3 cut(s) 271, 354, 568
MflI RGATCY 1 cut(s) 548
MluCI AATT 5 cut(s) 199, 292, 409, 500, 694
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 6 cut(s) 31, 255, 393, 552, 612, 738
MslI CAYNNNNRTG 3 cut(s) 314, 339, 594
MspI CCGG 3 cut(s) 71, 133, 142
MspR9I CCNGG 4 cut(s) 133, 143, 277, 681
MvaI CCWGG 2 cut(s) 277, 681
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 5 cut(s) 55, 164, 331, 576, 795
NciI CCSGG 2 cut(s) 133, 143
NdeII GATC 5 cut(s) 548, 690, 738, 744, 765
NlaIII CATG 4 cut(s) 593, 599, 704, 734
NlaIV GGNNCC 2 cut(s) 108, 536
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 1 cut(s) 593
OliI CACNNNNGTG 2 cut(s) 314, 339
PagI TCATGA 1 cut(s) 730
PfeI GAWTC 4 cut(s) 182, 428, 435, 803
PflMI CCANNNNNTGG 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 679
PkrI GCNGC 3 cut(s) 51, 195, 572
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Psp6I CCWGG 2 cut(s) 275, 679
PspEI GGTNACC 1 cut(s) 644
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 2 cut(s) 275, 679
PspN4I GGNNCC 2 cut(s) 108, 536
PspPI GGNCC 2 cut(s) 106, 130
PsuI RGATCY 1 cut(s) 548
RsaI GTAC 3 cut(s) 69, 238, 752
RsaNI GTAC 3 cut(s) 68, 237, 751
RseI CAYNNNNRTG 3 cut(s) 314, 339, 594
SatI GCNGC 3 cut(s) 50, 194, 571
Sau3AI GATC 5 cut(s) 548, 690, 738, 744, 765
Sau96I GGNCC 2 cut(s) 106, 130
ScaI AGTACT 2 cut(s) 238, 752
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 4 cut(s) 133, 143, 277, 681
SetI ASST 9 cut(s) 80, 272, 290, 318, 404, 543, 568, 623, 630
SfaNI GCATC 1 cut(s) 87
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 3 cut(s) 314, 339, 594
Sse9I AATT 5 cut(s) 199, 292, 409, 500, 694
SsiI CCGC 3 cut(s) 194, 571, 789
SspMI CTAG 3 cut(s) 9, 563, 822
StyD4I CCNGG 4 cut(s) 131, 141, 275, 679
StyI CCWWGG 3 cut(s) 53, 162, 541
TaaI ACNGT 2 cut(s) 445, 650
TaqI TCGA 4 cut(s) 356, 377, 755, 768
TasI AATT 5 cut(s) 199, 292, 409, 500, 694
TatI WGTACW 2 cut(s) 236, 750
TauI GCSGC 2 cut(s) 196, 573
TfiI GAWTC 4 cut(s) 182, 428, 435, 803
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 5 cut(s) 163, 246, 403, 441, 584
TspGWI ACGGA 2 cut(s) 128, 495
TspRI CASTG 1 cut(s) 621
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 2 cut(s) 274, 556
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 3 cut(s) 9, 563, 822
ZrmI AGTACT 2 cut(s) 238, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.