pycom01g11740

calcium-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
12792706 .. 12796071
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11740.8

Sequence Viewer

Length: 1464 bp
ATGTTGGTATCTAAGAAAATGGGTACTCGGGAAATCGGTTTTTGGATATTGGGTAATGAAGATTTTGAGAATTTGCAGGGTTTAGGTGGAGGTTCTAATGTGGCAAAGGTCAATCGCAGAGAAATTGAGAGCCTTTCAAGGAGCTATAGCGGCAGCTGCACTTCGTTTCCGTCGATATCAGAGCCAAAGCCAGAGACTTTGGCAGGGCCTTGCTTAGTTTCGTGCACGACTTTCAATATTTTGGCTCCAATCTATAAACGACTCGATCAACAGAATCAAAGCCTTCGAGAGAGCAACTACAGGGAGTTTTGGGTGGCCAGGAACCAGAGGATTTTGGATTGGTTGCTCTATGAATCATCCGCCATTATTTGTCTGCAGGAGTTCTGGGTTGGAAATGAAGAATTTGTGAATATGTACCTGGACAGGCTTGGTGATGCAGGCTATACTACCTTCAAGCTTGCCCGAACTAACAACCGGGGTGACGGTTTGCTGACTGCTGTGCGGAGGGATTGCTTTAGTGTTCTAAACTATCGAGAGTTGCATTTTAATGATTTTGGAGATCGTGTTGCTCAGCTGTTACATGTTCAGTTAGCTTCCCCATTTTCACAAAACCAGAGAGGAAACGTTCAGCAAGAAATGCTAATTGTGAATACTCACTTGTTATTTCCTCACGATTCCAGTCTCTCTATAGTGCGATTGCATCAGGTTTACAAAATTTTGCAATTTGTGGAGTCATATCAGAATGAAAACAAGCTAAACCCGATGCCCATTGTACTCTGTGGTGACTGGAATGGAAGTAAACGTGGCCATGTGTACAAATTCCTTAGATCGCAGGGGTTTGAATCAACATATGATGCTGCTCATCAATATACTGATGCGGATGCTCACAAGTGGGTTAGCCACCGTAATCATAGGGGAAACATCTGCGGTGTTGACTTCATTTGGCTTTGTAATCCCAATAAGTCACGAAAACCACTAAAGACTAGTTGGTGCGAAGCTGTTTTTGGAATATTACGGCGCCAGCTCCGAAAAGCTTCGATGGCTGAAAATGATGCATTTACCTTTCTAAAGGGTGATAGTCATGGTGATTTTATTACGACCTCAGCTTTCTGTGAAGGACTACATCAGGTTAACTTAATTGGTCATCCTACGGGACTAGGTTTCCAGGAGACGAGGGATCTCTGGATCCAAGCAGATGCCGACGCAAATGGTTTCTTTGATTACGAAGAATTTAAGAGTAGAATCTGGAGTTCGACAGCGTCAGAGGAAAAGGAAAGCCTTAACGCTAGTAGAGAGGAGTCCAAACGAGGCACGCAGGGCGCCCTTGGATTCAATGTGAAGAATGCAGTTCTATACCCCCGTGAGGCGGAGAAGGGAATATGGCCCGATGATTACACTCTCTCTGACCATGCGGGACTATCGGTTGTACTTTCACCAGAAAGGATGTGGTGTTGCCAGTCGTAA
Functional Annotation

Protein Analysis

488

Amino Acids

55.54

Weight (kDa)

6.41

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013430)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1017, 1319
AciI CCGC 7 cut(s) 150, 360, 502, 878, 927, 1367, 1412
AclI AACGTT 1 cut(s) 624
AclWI GGATC 3 cut(s) 1180, 1185, 1193
AcoI YGGCCR 2 cut(s) 315, 805
AcsI RAATTY 5 cut(s) 70, 401, 714, 818, 1229
AcyI GRCGYC 2 cut(s) 1018, 1320
AfaI GTAC 5 cut(s) 25, 416, 774, 815, 1428
AfiI CCNNNNNNNGG 2 cut(s) 1363, 1366
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 5 cut(s) 138, 235, 454, 842, 1333
AhlI ACTAGT 1 cut(s) 983
AjnI CCWGG 3 cut(s) 317, 417, 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 3 cut(s) 188, 686, 1163
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 3 cut(s) 1180, 1185, 1193
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 4 cut(s) 206, 315, 805, 1382
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 153, 156, 857
ApoI RAATTY 5 cut(s) 70, 401, 714, 818, 1229
Asp700I GAANNNNTTC 1 cut(s) 1033
AspLEI GCGC 2 cut(s) 1020, 1322
AspS9I GGNCC 2 cut(s) 206, 1383
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 6 cut(s) 443, 491, 794, 1085, 1097, 1425
AvaI CYCGRG 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 2 cut(s) 317, 807
BamHI GGATCC 1 cut(s) 1185
BanI GGYRCC 2 cut(s) 1017, 1319
Bbv12I GWGCWC 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 1102
BbvI GCAGC 3 cut(s) 143, 165, 844
BccI CCATC 1 cut(s) 1033
BceAI ACGGC 1 cut(s) 1031
BciT130I CCWGG 3 cut(s) 319, 419, 1166
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 3 cut(s) 188, 686, 1163
BcuI ACTAGT 1 cut(s) 983
BfaI CTAG 3 cut(s) 984, 1157, 1287
BfmI CTRYAG 4 cut(s) 145, 298, 374, 687
BfoI RGCGCY 2 cut(s) 1021, 1323
BisI GCNGC 4 cut(s) 151, 154, 157, 858
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 4 cut(s) 152, 155, 158, 859
Bme1390I CCNGG 4 cut(s) 319, 419, 476, 1166
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 206, 1383
BmiI GGNNCC 5 cut(s) 246, 323, 1019, 1187, 1321
BmrFI CCNGG 4 cut(s) 319, 419, 476, 1166
BmsI GCATC 8 cut(s) 424, 709, 753, 844, 865, 871, 1042, 1186
BpmI CTGGAG 1 cut(s) 1267
Bpu10I CCTNAGC 1 cut(s) 1102
Bpu1102I GCTNAGC 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 476
BsaHI GRCGYC 2 cut(s) 1018, 1320
BsaJI CCNNGG 2 cut(s) 475, 1324
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 1363, 1366
Bse1I ACTGG 3 cut(s) 678, 791, 1456
BseBI CCWGG 3 cut(s) 319, 419, 1166
BseDI CCNNGG 2 cut(s) 475, 1324
BseGI GGATG 4 cut(s) 356, 886, 1144, 1449
BseLI CCNNNNNNNGG 2 cut(s) 1363, 1366
BseMII CTCAG 2 cut(s) 584, 1116
BseNI ACTGG 3 cut(s) 678, 791, 1456
BseRI GAGGAG 1 cut(s) 1310
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 3 cut(s) 143, 165, 844
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 4 cut(s) 208, 317, 807, 1384
BshNI GGYRCC 2 cut(s) 1017, 1319
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 475
BslFI GGGAC 2 cut(s) 1167, 1428
BslI CCNNNNNNNGG 2 cut(s) 1363, 1366
BsmAI GTCTC 3 cut(s) 188, 686, 1163
BsmBI CGTCTC 1 cut(s) 1163
BsmFI GGGAC 2 cut(s) 1167, 1428
BsmI GAATGC 1 cut(s) 1348
BsnI GGCC 4 cut(s) 208, 317, 807, 1384
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 227
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 5 cut(s) 265, 559, 827, 1177, 1185
Bsp1720I GCTNAGC 1 cut(s) 570
BspACI CCGC 7 cut(s) 150, 360, 502, 878, 927, 1367, 1412
BspANI GGCC 4 cut(s) 208, 317, 807, 1384
BspCNI CTCAG 2 cut(s) 583, 1115
BspLI GGNNCC 5 cut(s) 246, 323, 1019, 1187, 1321
BspMAI CTGCAG 1 cut(s) 378
BspPI GGATC 3 cut(s) 1180, 1185, 1193
BspT107I GGYRCC 2 cut(s) 1017, 1319
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 3 cut(s) 678, 791, 1456
BssECI CCNNGG 2 cut(s) 475, 1324
BssMI GATC 5 cut(s) 265, 559, 827, 1177, 1185
BssNI GRCGYC 2 cut(s) 1018, 1320
BssT1I CCWWGG 1 cut(s) 1324
Bst2UI CCWGG 3 cut(s) 319, 419, 1166
Bst4CI ACNGT 2 cut(s) 485, 905
BstACI GRCGYC 2 cut(s) 1018, 1320
BstAPI GCANNNNNTGC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 813
BstC8I GCNNGC 4 cut(s) 439, 459, 1022, 1313
BstDEI CTNAG 5 cut(s) 12, 214, 570, 824, 1102
BstF5I GGATG 4 cut(s) 356, 886, 1144, 1449
BstH2I RGCGCY 2 cut(s) 1021, 1323
BstHHI GCGC 2 cut(s) 1020, 1322
BstKTI GATC 5 cut(s) 268, 562, 830, 1180, 1188
BstMAI GTCTC 3 cut(s) 188, 686, 1163
BstMBI GATC 5 cut(s) 265, 559, 827, 1177, 1185
BstMWI GCNNNNNNNGC 5 cut(s) 150, 156, 637, 1040, 1317
BstNI CCWGG 3 cut(s) 319, 419, 1166
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 4 cut(s) 317, 417, 474, 1164
BstSFI CTRYAG 4 cut(s) 145, 298, 374, 687
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 143, 165, 844
BstX2I RGATCY 2 cut(s) 1177, 1185
BstYI RGATCY 2 cut(s) 1177, 1185
BsuRI GGCC 4 cut(s) 208, 317, 807, 1384
BtsCI GGATG 4 cut(s) 356, 886, 1144, 1449
Cac8I GCNNGC 4 cut(s) 439, 459, 1022, 1313
CfoI GCGC 2 cut(s) 1020, 1322
Cfr13I GGNCC 2 cut(s) 206, 1383
CseI GACGC 2 cut(s) 1211, 1248
Csp6I GTAC 5 cut(s) 24, 415, 773, 814, 1427
CviAII CATG 4 cut(s) 581, 809, 1082, 1409
CviQI GTAC 5 cut(s) 24, 415, 773, 814, 1427
DdeI CTNAG 5 cut(s) 12, 214, 570, 824, 1102
DinI GGCGCC 2 cut(s) 1019, 1321
DpnI GATC 5 cut(s) 267, 561, 829, 1179, 1187
DpnII GATC 5 cut(s) 265, 559, 827, 1177, 1185
EaeI YGGCCR 2 cut(s) 315, 805
EciI GGCGGA 2 cut(s) 349, 1382
Eco130I CCWWGG 1 cut(s) 1324
Eco32I GATATC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 317, 417, 1164
EcoRV GATATC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 1324
EcoT22I ATGCAT 1 cut(s) 1057
EgeI GGCGCC 2 cut(s) 1019, 1321
EheI GGCGCC 2 cut(s) 1019, 1321
ErhI CCWWGG 1 cut(s) 1324
Esp3I CGTCTC 1 cut(s) 1163
FaeI CATG 4 cut(s) 584, 812, 1085, 1412
FaqI GGGAC 2 cut(s) 1167, 1428
FatI CATG 4 cut(s) 580, 808, 1081, 1408
FauI CCCGC 1 cut(s) 1405
FauNDI CATATG 1 cut(s) 850
Fnu4HI GCNGC 4 cut(s) 151, 154, 157, 858
FokI GGATG 4 cut(s) 343, 893, 1131, 1456
Fsp4HI GCNGC 4 cut(s) 151, 154, 157, 858
FspBI CTAG 3 cut(s) 984, 1157, 1287
GlaI GCGC 2 cut(s) 1019, 1321
GluI GCNGC 4 cut(s) 151, 154, 157, 858
GsuI CTGGAG 1 cut(s) 1267
HaeII RGCGCY 2 cut(s) 1021, 1323
HaeIII GGCC 4 cut(s) 208, 317, 807, 1384
HapII CCGG 1 cut(s) 475
HgaI GACGC 2 cut(s) 1211, 1248
HhaI GCGC 2 cut(s) 1020, 1322
Hin1I GRCGYC 2 cut(s) 1018, 1320
Hin1II CATG 4 cut(s) 584, 812, 1085, 1412
Hin6I GCGC 2 cut(s) 1018, 1320
HinP1I GCGC 2 cut(s) 1018, 1320
HincII GTYRAC 2 cut(s) 934, 1132
HindII GTYRAC 2 cut(s) 934, 1132
HindIII AAGCTT 2 cut(s) 455, 1032
HinfI GANTC 9 cut(s) 261, 274, 353, 674, 731, 842, 1242, 1298, 1329
HpaI GTTAAC 1 cut(s) 1132
HpaII CCGG 1 cut(s) 475
HphI GGTGA 6 cut(s) 443, 491, 794, 1085, 1097, 1425
Hpy166II GTNNAC 6 cut(s) 225, 709, 800, 814, 934, 1132
Hpy188I TCNGA 5 cut(s) 181, 741, 1028, 1264, 1405
Hpy188III TCNNGA 7 cut(s) 29, 287, 533, 671, 966, 1183, 1246
Hpy8I GTNNAC 6 cut(s) 225, 709, 800, 814, 934, 1132
Hpy99I CGWCG 2 cut(s) 175, 1205
HpyAV CCTTC 4 cut(s) 293, 460, 1109, 1366
HpyCH4III ACNGT 2 cut(s) 485, 905
HpyCH4IV ACGT 2 cut(s) 624, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 156, 637, 1040, 1317
HpyF3I CTNAG 5 cut(s) 12, 214, 570, 824, 1102
HpySE526I ACGT 2 cut(s) 624, 802
Hsp92I GRCGYC 2 cut(s) 1018, 1320
Hsp92II CATG 4 cut(s) 584, 812, 1085, 1412
HspAI GCGC 2 cut(s) 1018, 1320
KasI GGCGCC 2 cut(s) 1017, 1319
KspAI GTTAAC 1 cut(s) 1132
Kzo9I GATC 5 cut(s) 265, 559, 827, 1177, 1185
LmnI GCTCC 3 cut(s) 141, 250, 1029
Lsp1109I GCAGC 3 cut(s) 143, 165, 844
LweI GCATC 8 cut(s) 424, 709, 753, 844, 865, 871, 1042, 1186
MaeI CTAG 3 cut(s) 984, 1157, 1287
MaeII ACGT 2 cut(s) 624, 802
MaeIII GTNAC 4 cut(s) 479, 576, 782, 963
MalI GATC 5 cut(s) 267, 561, 829, 1179, 1187
MboI GATC 5 cut(s) 265, 559, 827, 1177, 1185
MboII GAAGA 4 cut(s) 71, 410, 1238, 1351
MflI RGATCY 2 cut(s) 1177, 1185
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 2 cut(s) 317, 807
MluCI AATT 9 cut(s) 70, 123, 401, 642, 714, 722, 818, 1137, 1229
MluNI TGGCCA 2 cut(s) 317, 807
Mly113I GGCGCC 2 cut(s) 1018, 1320
MlyI GAGTC 3 cut(s) 255, 740, 1307
MmeI TCCRAC 1 cut(s) 370
Mox20I TGGCCA 2 cut(s) 317, 807
Mph1103I ATGCAT 1 cut(s) 1057
MroXI GAANNNNTTC 1 cut(s) 1033
MscI TGGCCA 2 cut(s) 317, 807
MseI TTAA 5 cut(s) 546, 1131, 1136, 1233, 1281
MslI CAYNNNNRTG 1 cut(s) 546
Msp20I TGGCCA 2 cut(s) 317, 807
MspA1I CMGCKG 2 cut(s) 156, 574
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 4 cut(s) 319, 419, 476, 1166
Mva1269I GAATGC 1 cut(s) 1348
MvaI CCWGG 3 cut(s) 319, 419, 1166
MwoI GCNNNNNNNGC 5 cut(s) 150, 156, 637, 1040, 1317
NarI GGCGCC 2 cut(s) 1018, 1320
NciI CCSGG 1 cut(s) 476
NdeI CATATG 1 cut(s) 850
NdeII GATC 5 cut(s) 265, 559, 827, 1177, 1185
NlaIII CATG 4 cut(s) 584, 812, 1085, 1412
NlaIV GGNNCC 5 cut(s) 246, 323, 1019, 1187, 1321
NmuCI GTSAC 3 cut(s) 479, 782, 963
NsiI ATGCAT 1 cut(s) 1057
NspI RCATGY 1 cut(s) 584
PciI ACATGT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PctI GAATGC 1 cut(s) 1348
PdmI GAANNNNTTC 1 cut(s) 1033
PfeI GAWTC 6 cut(s) 274, 353, 674, 842, 1242, 1329
PflFI GACNNNGTC 1 cut(s) 1258
PfoI TCCNGGA 1 cut(s) 1164
PkrI GCNGC 4 cut(s) 152, 155, 158, 859
PleI GAGTC 3 cut(s) 255, 739, 1306
PluTI GGCGCC 2 cut(s) 1021, 1323
PpsI GAGTC 3 cut(s) 255, 739, 1306
PscI ACATGT 1 cut(s) 580
Psp1406I AACGTT 1 cut(s) 624
Psp6I CCWGG 3 cut(s) 317, 417, 1164
PspGI CCWGG 3 cut(s) 317, 417, 1164
PspN4I GGNNCC 5 cut(s) 246, 323, 1019, 1187, 1321
PspPI GGNCC 2 cut(s) 206, 1383
PstI CTGCAG 1 cut(s) 378
PsuI RGATCY 2 cut(s) 1177, 1185
PsyI GACNNNGTC 1 cut(s) 1258
PvuII CAGCTG 2 cut(s) 156, 574
RsaI GTAC 5 cut(s) 25, 416, 774, 815, 1428
RsaNI GTAC 5 cut(s) 24, 415, 773, 814, 1427
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 5 cut(s) 546, 1131, 1136, 1233, 1281
SatI GCNGC 4 cut(s) 151, 154, 157, 858
Sau3AI GATC 5 cut(s) 265, 559, 827, 1177, 1185
Sau96I GGNCC 2 cut(s) 206, 1383
SchI GAGTC 3 cut(s) 255, 740, 1307
ScrFI CCNGG 4 cut(s) 319, 419, 476, 1166
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 8 cut(s) 424, 709, 753, 844, 865, 871, 1042, 1186
SfcI CTRYAG 4 cut(s) 145, 298, 374, 687
SfoI GGCGCC 2 cut(s) 1019, 1321
SmiMI CAYNNNNRTG 1 cut(s) 546
SpeI ACTAGT 1 cut(s) 983
Sse9I AATT 9 cut(s) 70, 123, 401, 642, 714, 722, 818, 1137, 1229
SsiI CCGC 7 cut(s) 150, 360, 502, 878, 927, 1367, 1412
SspDI GGCGCC 2 cut(s) 1017, 1319
SspI AATATT 2 cut(s) 238, 1011
SspMI CTAG 3 cut(s) 984, 1157, 1287
StyD4I CCNGG 4 cut(s) 317, 417, 474, 1164
StyI CCWWGG 1 cut(s) 1324
TaaI ACNGT 2 cut(s) 485, 905
TaiI ACGT 2 cut(s) 627, 805
TaqI TCGA 6 cut(s) 173, 264, 286, 532, 1037, 1253
TasI AATT 9 cut(s) 70, 123, 401, 642, 714, 722, 818, 1137, 1229
TatI WGTACW 3 cut(s) 772, 813, 1426
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 6 cut(s) 274, 353, 674, 842, 1242, 1329
Tru1I TTAA 5 cut(s) 546, 1131, 1136, 1233, 1281
Tru9I TTAA 5 cut(s) 546, 1131, 1136, 1233, 1281
TseFI GTSAC 3 cut(s) 479, 782, 963
TseI GCWGC 3 cut(s) 153, 156, 857
Tsp45I GTSAC 3 cut(s) 479, 782, 963
TspDTI ATGAA 5 cut(s) 72, 366, 411, 759, 928
TspGWI ACGGA 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 1258
VneI GTGCAC 1 cut(s) 223
XapI RAATTY 5 cut(s) 70, 401, 714, 818, 1229
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 1443
XmnI GAANNNNTTC 1 cut(s) 1033
XspI CTAG 3 cut(s) 984, 1157, 1287
Zsp2I ATGCAT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.