pycom01g12730

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016393
Physical Location & Seq
Reverse (-)
13380870 .. 13381845
976 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGTGTAGGGTACAGAAAATGCACTCGGCGCGCAATTCACCTTCTATAAATGCTTTTGGCCTTGAGTGTTTTGTTCAACGTCCATCATATATATCACAAGAACTACAAACCAAACTACATACTTGTAAGCAACCGACACTACCAGTAATGGAGGTTCAGTGCAGCCCCTTTAGCTGGGAATTCGTCTATCAGGAAGAGGTACCGGATCTCGGGATAGAAGAGCTAAAGCATTCTCTTTCGTGCACAACTTTGGAGCTTGAGATGACAATTTTATCAGCAAAAGAGAAGATTTCGACAAGAGAAGAAGAAATTGCTCGTCTCAAAGATCTCCTAAGCAAAGCCCTCCAAGAGAGAGATGAAGCAGAAGCAAAATGCCAAACCCTAGTTTTGGACAAACTCATGCTCCAACAAGAGCTACAAAAGCAGCAGCAACAAAATGAGGATAATGGATCAAACAAACACTTTGCCTCTTCTGACTCCGAGATCATCGTTCCATCTCCGAATGCAGACCCTATTATGATGCCGCTGGCGCCATTGTCATCACCGCCGCCACTGCCACAGGCTGCTTTGAAATTGGGAGCTGAGAAGCCGTTGCCGGAAAAAGGGAAGCTACTTCAAGCAGTGATTGAAGCCGGACCTCTGCTTCAAACCCTTTTCCTAGCTGGACCGTTGCCTCAGTGGCAGCACCCTCCTCCCCAACTAAAGTCCATTGAGATCCCACCGGTTGCCATTTCTCCTCCACCACGGCGACTTCTAAACCAAGACTCTTGCATTAGCAGTAGTAATACTAGTTGTTTCAGTAACAAGAGAAGTCTGGTAAACTCTGATGGTTCTGGTTCTGATTCTCCGCCCAACACCAAGCACCAAAGGACCGTTCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

295

Amino Acids

32.62

Weight (kDa)

5.85

Isoelectric Point (pI)

77.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 72 - 290 8.8e-68 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016393)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18380
malus_domestica MD01G1100200.v1.1 MD07G1167100.v1.1
prunus_persica Prupe.2G205900_v2.0.a1
pyrus_communis pycom01g12730 pycom07g16210
rosa_chinensis RchiOBHm_Chr1g0362191
rosa_laevigata RLG00000027668
rosa_roxburghii Rroxscaffold_4G00294450
rosa_rugosa Rorug01G0295300
rosa_samantha Rh1AG304900 Rh1BG267700 Rh1CG285900 Rh1DG297700
rosa_wichuraiana Rw1G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 2 cut(s) 199, 529
AccII CGCG 1 cut(s) 31
AciI CCGC 4 cut(s) 524, 545, 548, 848
AclWI GGATC 3 cut(s) 213, 457, 709
AcsI RAATTY 1 cut(s) 179
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 2 cut(s) 12, 201
AfiI CCNNNNNNNGG 4 cut(s) 174, 209, 388, 602
AgeI ACCGGT 1 cut(s) 721
AgsI TTSAA 5 cut(s) 77, 571, 617, 629, 647
AhlI ACTAGT 1 cut(s) 788
AjuI GAANNNNNNNTTGG 1 cut(s) 858
AluBI AGCT 7 cut(s) 174, 223, 256, 415, 581, 610, 662
AluI AGCT 7 cut(s) 174, 223, 256, 415, 581, 610, 662
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 241
AlwI GGATC 3 cut(s) 213, 457, 709
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 241
ApeKI GCWGC 5 cut(s) 162, 424, 427, 563, 682
ApoI RAATTY 1 cut(s) 179
AsiGI ACCGGT 1 cut(s) 721
Asp718I GGTACC 1 cut(s) 199
AspLEI GCGC 3 cut(s) 31, 33, 532
AspS9I GGNCC 3 cut(s) 635, 665, 870
AsuHPI GGTGA 2 cut(s) 30, 534
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 3 cut(s) 635, 665, 870
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 2 cut(s) 199, 529
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 5 cut(s) 174, 436, 439, 550, 694
BccI CCATC 3 cut(s) 91, 502, 821
BceAI ACGGC 2 cut(s) 574, 761
BcoDI GTCTC 1 cut(s) 323
BcuI ACTAGT 1 cut(s) 788
BfaI CTAG 3 cut(s) 383, 659, 789
BfoI RGCGCY 1 cut(s) 533
BglI GCCNNNNNGGC 1 cut(s) 679
BglII AGATCT 1 cut(s) 325
BisI GCNGC 7 cut(s) 163, 425, 428, 524, 548, 564, 683
BlsI GCNGC 7 cut(s) 164, 426, 429, 525, 549, 565, 684
Bme18I GGWCC 3 cut(s) 635, 665, 870
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 635, 665, 870
BmiI GGNNCC 2 cut(s) 201, 531
BmsI GCATC 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 83, 278
BsaHI GRCGYC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 743
BsaWI WCCGGW 2 cut(s) 202, 721
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 387, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 209, 388, 602
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 743
BseLI CCNNNNNNNGG 4 cut(s) 174, 209, 388, 602
BseMII CTCAG 2 cut(s) 573, 689
BseNI ACTGG 1 cut(s) 143
BsePI GCGCGC 1 cut(s) 29
BseRI GAGGAG 2 cut(s) 681, 726
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 5 cut(s) 174, 436, 439, 550, 694
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 2 cut(s) 199, 529
BshTI ACCGGT 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 4 cut(s) 203, 596, 633, 722
BslI CCNNNNNNNGG 4 cut(s) 174, 209, 388, 602
BsmAI GTCTC 1 cut(s) 323
BsmBI CGTCTC 1 cut(s) 323
BsmI GAATGC 2 cut(s) 229, 508
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 5 cut(s) 205, 325, 449, 483, 714
BspACI CCGC 4 cut(s) 524, 545, 548, 848
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 574, 688
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 201, 531
BspPI GGATC 3 cut(s) 213, 457, 709
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 2 cut(s) 199, 529
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 1 cut(s) 743
BssHII GCGCGC 1 cut(s) 29
BssMI GATC 5 cut(s) 205, 325, 449, 483, 714
BssNI GRCGYC 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 669, 874
Bst6I CTCTTC 3 cut(s) 189, 213, 475
BstACI GRCGYC 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 31, 528
BstDEI CTNAG 3 cut(s) 332, 582, 675
BstDSI CCRYGG 1 cut(s) 743
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 3 cut(s) 31, 33, 532
BstKTI GATC 5 cut(s) 208, 328, 452, 486, 717
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 5 cut(s) 205, 325, 449, 483, 714
BstMWI GCNNNNNNNGC 6 cut(s) 28, 171, 421, 529, 553, 679
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 5 cut(s) 174, 436, 439, 550, 694
BstX2I RGATCY 3 cut(s) 205, 325, 714
BstYI RGATCY 3 cut(s) 205, 325, 714
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 743
BtsI GCAGTG 2 cut(s) 551, 627
BtsIMutI CAGTG 4 cut(s) 164, 551, 627, 683
Cac8I GCNNGC 2 cut(s) 31, 528
CfoI GCGC 3 cut(s) 31, 33, 532
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 635, 665, 870
Csp6I GTAC 2 cut(s) 11, 200
CspAI ACCGGT 1 cut(s) 721
CviAII CATG 1 cut(s) 400
CviQI GTAC 2 cut(s) 11, 200
DdeI CTNAG 3 cut(s) 332, 582, 675
DinI GGCGCC 1 cut(s) 531
DpnI GATC 5 cut(s) 207, 327, 451, 485, 716
DpnII GATC 5 cut(s) 205, 325, 449, 483, 714
Eam1104I CTCTTC 3 cut(s) 189, 213, 475
EarI CTCTTC 3 cut(s) 189, 213, 475
EciI GGCGGA 1 cut(s) 837
Eco47I GGWCC 3 cut(s) 635, 665, 870
Eco88I CYCGRG 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 179
EgeI GGCGCC 1 cut(s) 531
EheI GGCGCC 1 cut(s) 531
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 1 cut(s) 403
FaiI YATR 7 cut(s) 47, 88, 90, 92, 120, 401, 518
FatI CATG 1 cut(s) 399
Fnu4HI GCNGC 7 cut(s) 163, 425, 428, 524, 548, 564, 683
Fsp4HI GCNGC 7 cut(s) 163, 425, 428, 524, 548, 564, 683
FspBI CTAG 3 cut(s) 383, 659, 789
GlaI GCGC 3 cut(s) 30, 32, 531
GluI GCNGC 7 cut(s) 163, 425, 428, 524, 548, 564, 683
GsaI CCCAGC 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 1 cut(s) 60
HapII CCGG 4 cut(s) 203, 596, 633, 722
HhaI GCGC 3 cut(s) 31, 33, 532
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 1 cut(s) 403
Hin6I GCGC 3 cut(s) 29, 31, 530
HinP1I GCGC 3 cut(s) 29, 31, 530
HinfI GANTC 3 cut(s) 476, 764, 842
HpaII CCGG 4 cut(s) 203, 596, 633, 722
HphI GGTGA 2 cut(s) 30, 534
Hpy166II GTNNAC 2 cut(s) 243, 820
Hpy188I TCNGA 5 cut(s) 475, 481, 501, 826, 841
Hpy188III TCNNGA 2 cut(s) 191, 211
Hpy8I GTNNAC 2 cut(s) 243, 820
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 2 cut(s) 669, 874
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 5 cut(s) 22, 162, 243, 506, 771
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 171, 421, 529, 553, 679
HpyF3I CTNAG 3 cut(s) 332, 582, 675
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 1 cut(s) 403
HspAI GCGC 3 cut(s) 29, 31, 530
KasI GGCGCC 1 cut(s) 529
KpnI GGTACC 1 cut(s) 203
Kzo9I GATC 5 cut(s) 205, 325, 449, 483, 714
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 3 cut(s) 253, 408, 578
Lsp1109I GCAGC 5 cut(s) 174, 436, 439, 550, 694
LweI GCATC 1 cut(s) 510
MaeI CTAG 3 cut(s) 383, 659, 789
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 800
MalI GATC 5 cut(s) 207, 327, 451, 485, 716
MboI GATC 5 cut(s) 205, 325, 449, 483, 714
MboII GAAGA 6 cut(s) 206, 230, 298, 314, 317, 462
MflI RGATCY 3 cut(s) 205, 325, 714
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 5 cut(s) 34, 179, 267, 309, 572
Mly113I GGCGCC 1 cut(s) 530
MlyI GAGTC 2 cut(s) 470, 758
MmeI TCCRAC 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 4 cut(s) 203, 596, 633, 722
Mva1269I GAATGC 2 cut(s) 229, 508
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 6 cut(s) 28, 171, 421, 529, 553, 679
NarI GGCGCC 1 cut(s) 530
NdeII GATC 5 cut(s) 205, 325, 449, 483, 714
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 2 cut(s) 201, 531
NmeAIII GCCGAG 1 cut(s) 5
PauI GCGCGC 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 213
PctI GAATGC 2 cut(s) 229, 508
PfeI GAWTC 1 cut(s) 842
PinAI ACCGGT 1 cut(s) 721
PkrI GCNGC 7 cut(s) 164, 426, 429, 525, 549, 565, 684
PleI GAGTC 2 cut(s) 470, 758
PluTI GGCGCC 1 cut(s) 533
PpsI GAGTC 2 cut(s) 470, 758
PspFI CCCAGC 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 201, 531
PspPI GGNCC 3 cut(s) 635, 665, 870
PsrI GAACNNNNNNTAC 2 cut(s) 138, 170
PsuI RGATCY 3 cut(s) 205, 325, 714
PteI GCGCGC 1 cut(s) 29
RsaI GTAC 2 cut(s) 12, 201
RsaNI GTAC 2 cut(s) 11, 200
SapI GCTCTTC 1 cut(s) 213
SatI GCNGC 7 cut(s) 163, 425, 428, 524, 548, 564, 683
Sau3AI GATC 5 cut(s) 205, 325, 449, 483, 714
Sau96I GGNCC 3 cut(s) 635, 665, 870
SchI GAGTC 2 cut(s) 470, 758
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 1 cut(s) 510
SfoI GGCGCC 1 cut(s) 531
SinI GGWCC 3 cut(s) 635, 665, 870
SmlI CTYRAG 2 cut(s) 62, 257
SmoI CTYRAG 2 cut(s) 62, 257
SpeI ACTAGT 1 cut(s) 788
Sse9I AATT 5 cut(s) 34, 179, 267, 309, 572
SsiI CCGC 4 cut(s) 524, 545, 548, 848
SspDI GGCGCC 1 cut(s) 529
SspMI CTAG 3 cut(s) 383, 659, 789
TaaI ACNGT 2 cut(s) 669, 874
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 293
TasI AATT 5 cut(s) 34, 179, 267, 309, 572
TauI GCSGC 2 cut(s) 526, 550
TfiI GAWTC 1 cut(s) 842
TscAI CASTG 4 cut(s) 164, 558, 627, 683
TseI GCWGC 5 cut(s) 162, 424, 427, 563, 682
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 4 cut(s) 164, 558, 627, 683
VneI GTGCAC 1 cut(s) 241
VpaK11BI GGWCC 3 cut(s) 635, 665, 870
XapI RAATTY 1 cut(s) 179
XspI CTAG 3 cut(s) 383, 659, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.