Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006501

Physical Location & Seq

Genomic Coordinates Forward (+)

13402439 .. 13407582

Gene Structure 5144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGCTTCTTCCTACCAGCTGCATTCTCTTAATTTGTTTCTTTCTCTCTGCTCTCTCTAGAGCTTCTTACTCCTTCAACCTCTCCCTCCCTCACGAGCACCCAGACCCTGATGCAGTTGCTCATGAAGTTCAAAGGAGTGTCAATGCGTCTGTTTCCAGGTGCCAAAAGCTGTCCATTGACGTCAAGGACCAAAGCCAGTGCCTTGTCGGCAACCCAATCGACGATTGCTGGCGCTGCGAGGACTGGAGCAACAACCGCCAAAAGCTCGCCGATTGCGGCATCGGGTTCGGCATGGACGCCATGGGAGGTAAAGGAGGCCTGATCTACATAGTCACCGACTCGTCGGATTCCAACCCGGCCAACCCAACTCCGGGCACGCTCCGCCACGCCGTCATCCAAACCGAGCCCCGCTCGATCATCTTCTCCGCTGACATGACCATCAAGCTCAAATGTGAGCTCATCGTCAACAGCTTCAAGACCATCGACGGCCGCGGCTACAGCGTCCACGTCACCGGTGGCGGATGCATAACCCTCCAGTACGTCTCCAACATCATCATCCACAATATCCACGTCCACCATTGCAAGCCCGCCGGCAACACCAACGTCGCCTCCAGCCCCACCCACGTCGGCTGGCGTGGCGAGTCGGACGGCGACGGCATCTCCCTCTTCGGCGCTCACAAAATCTGGATCGACCACTGCTCCCTCTCGTTCTGCGCTGACGGATTAATCGACGCCATCATGGGGTCGACCGGAATCACGATTTCCAACAACTACTTCGCCCACCATGACGAGGTGATGCTGTTGGGCCACAACGACAAGTACTTGCCGGACTCCGGGATGCAGGTGACGATAGCGTTTAACCACTTCGGTGTGGCGCTGGTGCAGCGTATGCCGCGGTGCAGACGTGGGTACATCCACGTGGTGAACAACGACTTCACGCGGTGGGAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGGAACCGGTACACCGCTCCTCAGGACCCGAACGCGAAGGAGGTGACGAAGCGCGTGGACACGAACGAGGGGGATTGGTCCGACTGGAACTGGAGGACGGAGGGGGACGTAATGGTAAATGGCGCGTTTTTCGTACCGTCCGGCGCGGGAATGAGCGCTCAGTACGCCAAGGCCTCAAGCATCGAGCCCAAGTCCGTGACTCTCATTGAACAAATCACGGCCAACGCCGGTGTCTTTGGTGACCCAAGGGAGGAAAGCAGTCGCGTAACGAGCCCCGATGACGGGACCATCACCGATGGCGGCAGTGGAGGATCCAACGGCCACGGCAACGGCAATGACGATGACTTTTTTGGAATGATATTTGGGAACAGTGCTCGACCAAGCCCAAACACAATATTCTTGTCTCTTTCAATTATTTTTATTTTGTACTTTACCACCAAACATGGTGATGCTCTATTATCATTACTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0009825 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045229 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

489

Amino Acids

52.93

Weight (kDa)

5.62

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectate_lyase_4	PF00544	150 - 353	7.4e-20	Pectate lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54920 AT5G04310 AT5G04310 AT5G04310
fragaria_vesca	FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400 FvH4_7g18400
malus_domestica	MD01G1100600.v1.1
prunus_persica	Prupe.2G206100_v2.0.a1 Prupe.2G206100_v2.0.a1
pyrus_communis	pycom01g12750 pycom07g16230
rosa_chinensis	RchiOBHm_Chr1g0362211
rosa_laevigata	RLG00000027666
rosa_multiflora	Rmu_co8314571.1_g000001 Rmu_sc0001237.1_g000010
rosa_roxburghii	Rroxscaffold_4G00294430
rosa_rugosa	Rorug01G0295600 Rorug01G0295700 Rorug01G0295800.1
rosa_samantha	Rh1AG305100 Rh1BG267900 Rh1CG286100 Rh1DG297900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	832
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	159
AccBSI	CCGCTC	2 cut(s)	411, 1010
AccI	GTMKAC	1 cut(s)	746
AccII	CGCG	8 cut(s)	492, 895, 940, 1028, 1047, 1118, 1139, 1257
AclWI	GGATC	3 cut(s)	695, 1299, 1312
AcoI	YGGCCR	4 cut(s)	357, 487, 1212, 1312
AcvI	CACGTG	1 cut(s)	919
AcyI	GRCGYC	3 cut(s)	180, 297, 732
AdeI	CACNNNGTG	2 cut(s)	922, 942
AfaI	GTAC	7 cut(s)	539, 821, 911, 1004, 1128, 1157, 1421
AfeI	AGCGCT	2 cut(s)	970, 1150
AfiI	CCNNNNNNNGG	8 cut(s)	370, 371, 741, 790, 833, 1243, 1274, 1275
AgeI	ACCGGT	2 cut(s)	512, 999
AgsI	TTSAA	5 cut(s)	76, 131, 475, 1202, 1404
AjiI	CACGTC	4 cut(s)	508, 571, 625, 905
AjnI	CCWGG	2 cut(s)	155, 990
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AleI	CACNNNNGTG	1 cut(s)	867
AluBI	AGCT	7 cut(s)	18, 62, 169, 265, 445, 457, 471
AluI	AGCT	7 cut(s)	18, 62, 169, 265, 445, 457, 471
Alw21I	GWGCWC	3 cut(s)	99, 459, 1369
Alw26I	GTCTC	2 cut(s)	547, 1401
AlwI	GGATC	3 cut(s)	695, 1299, 1312
AlwNI	CAGNNNCTG	1 cut(s)	107
Aor51HI	AGCGCT	2 cut(s)	970, 1150
AoxI	GGCC	7 cut(s)	316, 357, 487, 805, 1164, 1212, 1312
ApeKI	GCWGC	3 cut(s)	18, 234, 883
AseI	ATTAAT	1 cut(s)	725
AsiGI	ACCGGT	2 cut(s)	512, 999
AspLEI	GCGC	9 cut(s)	234, 674, 716, 877, 971, 1047, 1118, 1139, 1151
AspS9I	GGNCC	5 cut(s)	187, 805, 1018, 1071, 1278
AsuC2I	CCSGG	3 cut(s)	356, 372, 835
AsuHPI	GGTGA	9 cut(s)	325, 502, 805, 856, 934, 1048, 1244, 1276, 1451
AvaII	GGWCC	4 cut(s)	187, 1018, 1071, 1278
AxyI	CCTNAGG	1 cut(s)	1014
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	1304
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	4 cut(s)	408, 459, 1182, 1268
BauI	CACGAG	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	919
Bbv12I	GWGCWC	3 cut(s)	99, 459, 1369
BbvI	GCAGC	3 cut(s)	5, 221, 895
BccI	CCATC	6 cut(s)	446, 488, 743, 989, 1283, 1289
BceAI	ACGGC	8 cut(s)	374, 502, 664, 670, 1227, 1327, 1333, 1339
BcgI	CGANNNNNNTGC	4 cut(s)	199, 233, 268, 302
BciT130I	CCWGG	2 cut(s)	157, 992
BcnI	CCSGG	3 cut(s)	356, 372, 835
BcoDI	GTCTC	2 cut(s)	547, 1401
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	496
BfoI	RGCGCY	5 cut(s)	235, 675, 878, 972, 1152
BfuAI	ACCTGC	1 cut(s)	832
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	8 cut(s)	19, 235, 277, 490, 493, 884, 893, 1294
BlsI	GCNGC	8 cut(s)	20, 236, 278, 491, 494, 885, 894, 1295
BmcAI	AGTACT	1 cut(s)	821
Bme1390I	CCNGG	5 cut(s)	157, 356, 372, 835, 992
Bme18I	GGWCC	4 cut(s)	187, 1018, 1071, 1278
BmgBI	CACGTC	4 cut(s)	508, 571, 625, 905
BmgT120I	GGNCC	5 cut(s)	187, 805, 1018, 1071, 1278
BmiI	GGNNCC	5 cut(s)	161, 998, 1020, 1279, 1306
BmrFI	CCNGG	5 cut(s)	157, 356, 372, 835, 992
BmsI	GCATC	8 cut(s)	100, 288, 512, 666, 786, 828, 1182, 1432
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	4 cut(s)	265, 518, 595, 1105
BpuEI	CTTGAG	1 cut(s)	1153
BpuMI	CCSGG	3 cut(s)	356, 372, 835
BsaAI	YACGTR	1 cut(s)	919
BsaHI	GRCGYC	3 cut(s)	180, 297, 732
BsaJI	CCNNGG	7 cut(s)	300, 490, 893, 991, 1161, 1238, 1315
BsaWI	WCCGGW	3 cut(s)	512, 749, 999
BsaXI	ACNNNNNCTCC	6 cut(s)	593, 623, 644, 674, 683, 713
Bsc4I	CCNNNNNNNGG	8 cut(s)	370, 371, 741, 790, 833, 1243, 1274, 1275
Bse118I	RCCGGY	4 cut(s)	512, 590, 999, 1220
Bse1I	ACTGG	5 cut(s)	196, 248, 535, 1082, 1088
Bse21I	CCTNAGG	1 cut(s)	1014
Bse3DI	GCAATG	2 cut(s)	577, 1333
BseBI	CCWGG	2 cut(s)	157, 992
BseDI	CCNNGG	7 cut(s)	300, 490, 893, 991, 1161, 1238, 1315
BseGI	GGATG	5 cut(s)	393, 527, 555, 843, 912
BseLI	CCNNNNNNNGG	8 cut(s)	370, 371, 741, 790, 833, 1243, 1274, 1275
BseMI	GCAATG	2 cut(s)	577, 1333
BseMII	CTCAG	2 cut(s)	1028, 1166
BseNI	ACTGG	5 cut(s)	196, 248, 535, 1082, 1088
BseRI	GAGGAG	1 cut(s)	1002
BseSI	GKGCMC	1 cut(s)	377
BseX3I	CGGCCG	1 cut(s)	487
BseXI	GCAGC	3 cut(s)	5, 221, 895
BsgI	GTGCAG	2 cut(s)	902, 919
Bsh1236I	CGCG	8 cut(s)	492, 895, 940, 1028, 1047, 1118, 1139, 1257
Bsh1285I	CGRYCG	2 cut(s)	490, 750
BshFI	GGCC	7 cut(s)	318, 359, 489, 807, 1166, 1214, 1314
BshNI	GGYRCC	1 cut(s)	159
BshTI	ACCGGT	2 cut(s)	512, 999
BsiEI	CGRYCG	2 cut(s)	490, 750
BsiHKAI	GWGCWC	3 cut(s)	99, 459, 1369
BslFI	GGGAC	2 cut(s)	1112, 1291
BslI	CCNNNNNNNGG	8 cut(s)	370, 371, 741, 790, 833, 1243, 1274, 1275
BsmAI	GTCTC	2 cut(s)	547, 1401
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	1112, 1291
BsmI	GAATGC	1 cut(s)	21
BsnI	GGCC	7 cut(s)	318, 359, 489, 807, 1166, 1214, 1314
Bsp1286I	GDGCHC	7 cut(s)	99, 377, 408, 459, 1182, 1268, 1369
Bsp143I	GATC	4 cut(s)	321, 414, 687, 1304
Bsp19I	CCATGG	1 cut(s)	300
BspANI	GGCC	7 cut(s)	318, 359, 489, 807, 1166, 1214, 1314
BspCNI	CTCAG	2 cut(s)	1027, 1165
BspFNI	CGCG	8 cut(s)	492, 895, 940, 1028, 1047, 1118, 1139, 1257
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	5 cut(s)	161, 998, 1020, 1279, 1306
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	3 cut(s)	695, 1299, 1312
BspT107I	GGYRCC	1 cut(s)	159
BsrBI	CCGCTC	2 cut(s)	411, 1010
BsrDI	GCAATG	2 cut(s)	577, 1333
BsrFI	RCCGGY	4 cut(s)	512, 590, 999, 1220
BsrI	ACTGG	5 cut(s)	196, 248, 535, 1082, 1088
BssAI	RCCGGY	4 cut(s)	512, 590, 999, 1220
BssECI	CCNNGG	7 cut(s)	300, 490, 893, 991, 1161, 1238, 1315
BssMI	GATC	4 cut(s)	321, 414, 687, 1304
BssNI	GRCGYC	3 cut(s)	180, 297, 732
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	3 cut(s)	300, 1161, 1238
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	2 cut(s)	157, 992
Bst4CI	ACNGT	3 cut(s)	1131, 1364, 1461
Bst6I	CTCTTC	1 cut(s)	671
BstACI	GRCGYC	3 cut(s)	180, 297, 732
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstBAI	YACGTR	1 cut(s)	919
BstC8I	GCNNGC	7 cut(s)	230, 267, 377, 584, 588, 592, 632
BstDEI	CTNAG	2 cut(s)	1014, 1152
BstDSI	CCRYGG	4 cut(s)	300, 490, 893, 1315
BstEII	GGTNACC	1 cut(s)	1232
BstF5I	GGATG	5 cut(s)	393, 527, 555, 843, 912
BstFNI	CGCG	8 cut(s)	492, 895, 940, 1028, 1047, 1118, 1139, 1257
BstH2I	RGCGCY	5 cut(s)	235, 675, 878, 972, 1152
BstHHI	GCGC	9 cut(s)	234, 674, 716, 877, 971, 1047, 1118, 1139, 1151
BstKTI	GATC	4 cut(s)	324, 417, 690, 1307
BstMAI	GTCTC	2 cut(s)	547, 1401
BstMBI	GATC	4 cut(s)	321, 414, 687, 1304
BstMCI	CGRYCG	2 cut(s)	490, 750
BstNI	CCWGG	2 cut(s)	157, 992
BstPI	GGTNACC	1 cut(s)	1232
BstSCI	CCNGG	5 cut(s)	155, 354, 370, 833, 990
BstSFI	CTRYAG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	8 cut(s)	492, 895, 940, 1028, 1047, 1118, 1139, 1257
BstV1I	GCAGC	3 cut(s)	5, 221, 895
BstX2I	RGATCY	1 cut(s)	1304
BstYI	RGATCY	1 cut(s)	1304
BstZI	CGGCCG	1 cut(s)	487
Bsu36I	CCTNAGG	1 cut(s)	1014
BsuRI	GGCC	7 cut(s)	318, 359, 489, 807, 1166, 1214, 1314
BtgI	CCRYGG	4 cut(s)	300, 490, 893, 1315
BtrI	CACGTC	4 cut(s)	508, 571, 625, 905
BtsCI	GGATG	5 cut(s)	393, 527, 555, 843, 912
BtsI	GCAGTG	2 cut(s)	694, 1303
BtsIMutI	CAGTG	4 cut(s)	203, 694, 1303, 1369
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	7 cut(s)	230, 267, 377, 584, 588, 592, 632
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	9 cut(s)	234, 674, 716, 877, 971, 1047, 1118, 1139, 1151
Cfr10I	RCCGGY	4 cut(s)	512, 590, 999, 1220
Cfr13I	GGNCC	5 cut(s)	187, 805, 1018, 1071, 1278
Cfr42I	CCGCGG	2 cut(s)	493, 896
CseI	GACGC	4 cut(s)	135, 305, 490, 740
Csp6I	GTAC	7 cut(s)	538, 820, 910, 1003, 1127, 1156, 1420
CspAI	ACCGGT	2 cut(s)	512, 999
CviAII	CATG	7 cut(s)	122, 292, 301, 433, 739, 785, 1436
CviQI	GTAC	7 cut(s)	538, 820, 910, 1003, 1127, 1156, 1420
DdeI	CTNAG	2 cut(s)	1014, 1152
DpnI	GATC	4 cut(s)	323, 416, 689, 1306
DpnII	GATC	4 cut(s)	321, 414, 687, 1304
DraIII	CACNNNGTG	2 cut(s)	922, 942
EaeI	YGGCCR	4 cut(s)	357, 487, 1212, 1312
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
EciI	GGCGGA	2 cut(s)	371, 534
Ecl136II	GAGCTC	1 cut(s)	457
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	3 cut(s)	300, 1161, 1238
Eco147I	AGGCCT	2 cut(s)	318, 1166
Eco24I	GRGCYC	4 cut(s)	408, 459, 1182, 1268
Eco47I	GGWCC	4 cut(s)	187, 1018, 1071, 1278
Eco47III	AGCGCT	2 cut(s)	970, 1150
Eco52I	CGGCCG	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	457
Eco72I	CACGTG	1 cut(s)	919
Eco81I	CCTNAGG	1 cut(s)	1014
Eco91I	GGTNACC	1 cut(s)	1232
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	1018
EcoO65I	GGTNACC	1 cut(s)	1232
EcoRII	CCWGG	2 cut(s)	155, 990
EcoT14I	CCWWGG	3 cut(s)	300, 1161, 1238
EcoT22I	ATGCAT	1 cut(s)	527
EcoT38I	GRGCYC	4 cut(s)	408, 459, 1182, 1268
ErhI	CCWWGG	3 cut(s)	300, 1161, 1238
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	7 cut(s)	125, 295, 304, 436, 742, 788, 1439
FaqI	GGGAC	2 cut(s)	1112, 1291
FatI	CATG	7 cut(s)	121, 291, 300, 432, 738, 784, 1435
FauI	CCCGC	3 cut(s)	416, 595, 1132
FblI	GTMKAC	1 cut(s)	746
Fnu4HI	GCNGC	8 cut(s)	19, 235, 277, 490, 493, 884, 893, 1294
FokI	GGATG	5 cut(s)	380, 534, 542, 850, 899
FriOI	GRGCYC	4 cut(s)	408, 459, 1182, 1268
Fsp4HI	GCNGC	8 cut(s)	19, 235, 277, 490, 493, 884, 893, 1294
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	9 cut(s)	233, 673, 715, 876, 970, 1046, 1117, 1138, 1150
GluI	GCNGC	8 cut(s)	19, 235, 277, 490, 493, 884, 893, 1294
GsuI	CTGGAG	4 cut(s)	265, 518, 595, 1105
HaeII	RGCGCY	5 cut(s)	235, 675, 878, 972, 1152
HaeIII	GGCC	7 cut(s)	318, 359, 489, 807, 1166, 1214, 1314
HgaI	GACGC	4 cut(s)	135, 305, 490, 740
HhaI	GCGC	9 cut(s)	234, 674, 716, 877, 971, 1047, 1118, 1139, 1151
Hin1I	GRCGYC	3 cut(s)	180, 297, 732
Hin1II	CATG	7 cut(s)	125, 295, 304, 436, 742, 788, 1439
Hin6I	GCGC	9 cut(s)	232, 672, 714, 875, 969, 1045, 1116, 1137, 1149
HinP1I	GCGC	9 cut(s)	232, 672, 714, 875, 969, 1045, 1116, 1137, 1149
HincII	GTYRAC	2 cut(s)	466, 747
HindII	GTYRAC	2 cut(s)	466, 747
HinfI	GANTC	6 cut(s)	338, 347, 641, 753, 830, 1192
HphI	GGTGA	9 cut(s)	325, 502, 805, 856, 934, 1048, 1244, 1276, 1451
Hpy166II	GTNNAC	7 cut(s)	466, 505, 574, 747, 925, 1005, 1051
Hpy188I	TCNGA	3 cut(s)	346, 646, 1075
Hpy188III	TCNNGA	7 cut(s)	57, 92, 122, 475, 685, 757, 1016
Hpy8I	GTNNAC	7 cut(s)	466, 505, 574, 747, 925, 1005, 1051
Hpy99I	CGWCG	7 cut(s)	224, 346, 488, 608, 629, 656, 734
HpyAV	CCTTC	2 cut(s)	82, 1024
HpyCH4III	ACNGT	3 cut(s)	1131, 1364, 1461
HpyCH4IV	ACGT	9 cut(s)	180, 507, 540, 570, 603, 624, 904, 918, 1101
HpyCH4V	TGCA	7 cut(s)	21, 113, 525, 582, 841, 883, 900
HpyF3I	CTNAG	2 cut(s)	1014, 1152
HpySE526I	ACGT	9 cut(s)	180, 507, 540, 570, 603, 624, 904, 918, 1101
Hsp92I	GRCGYC	3 cut(s)	180, 297, 732
Hsp92II	CATG	7 cut(s)	125, 295, 304, 436, 742, 788, 1439
HspAI	GCGC	9 cut(s)	232, 672, 714, 875, 969, 1045, 1116, 1137, 1149
KroI	GCCGGC	1 cut(s)	590
KroNI	GCCGGC	1 cut(s)	592
KspI	CCGCGG	2 cut(s)	493, 896
Kzo9I	GATC	4 cut(s)	321, 414, 687, 1304
LmnI	GCTCC	4 cut(s)	246, 384, 704, 1015
Lsp1109I	GCAGC	3 cut(s)	5, 221, 895
LweI	GCATC	8 cut(s)	100, 288, 512, 666, 786, 828, 1182, 1432
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	9 cut(s)	180, 507, 540, 570, 603, 624, 904, 918, 1101
MaeIII	GTNAC	7 cut(s)	331, 508, 844, 1036, 1189, 1232, 1258
MalI	GATC	4 cut(s)	323, 416, 689, 1306
MbiI	CCGCTC	2 cut(s)	411, 1010
MboI	GATC	4 cut(s)	321, 414, 687, 1304
MboII	GAAGA	2 cut(s)	412, 658
MflI	RGATCY	1 cut(s)	1304
MhlI	GDGCHC	7 cut(s)	99, 377, 408, 459, 1182, 1268, 1369
MluCI	AATT	2 cut(s)	30, 1404
MlyI	GAGTC	4 cut(s)	332, 650, 824, 1186
MmeI	TCCRAC	7 cut(s)	324, 375, 570, 624, 789, 1098, 1332
Mph1103I	ATGCAT	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	590
MseI	TTAA	3 cut(s)	29, 725, 858
MslI	CAYNNNNRTG	3 cut(s)	867, 917, 1440
MspA1I	CMGCKG	4 cut(s)	18, 428, 492, 895
MspR9I	CCNGG	5 cut(s)	157, 356, 372, 835, 992
Mva1269I	GAATGC	1 cut(s)	21
MvaI	CCWGG	2 cut(s)	157, 992
MvnI	CGCG	8 cut(s)	492, 895, 940, 1028, 1047, 1118, 1139, 1257
NaeI	GCCGGC	1 cut(s)	592
NciI	CCSGG	3 cut(s)	356, 372, 835
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	4 cut(s)	321, 414, 687, 1304
NgoMIV	GCCGGC	1 cut(s)	590
NlaIII	CATG	7 cut(s)	125, 295, 304, 436, 742, 788, 1439
NlaIV	GGNNCC	5 cut(s)	161, 998, 1020, 1279, 1306
NmuCI	GTSAC	6 cut(s)	331, 508, 844, 1036, 1189, 1232
NsiI	ATGCAT	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	867
PagI	TCATGA	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	832
PceI	AGGCCT	2 cut(s)	318, 1166
PcsI	WCGNNNNNNNCGW	2 cut(s)	726, 1329
PctI	GAATGC	1 cut(s)	21
PdiI	GCCGGC	1 cut(s)	592
PfeI	GAWTC	2 cut(s)	347, 753
PfoI	TCCNGGA	1 cut(s)	833
PinAI	ACCGGT	2 cut(s)	512, 999
PkrI	GCNGC	8 cut(s)	20, 236, 278, 491, 494, 885, 894, 1295
PleI	GAGTC	4 cut(s)	332, 649, 824, 1186
PmaCI	CACGTG	1 cut(s)	919
PmlI	CACGTG	1 cut(s)	919
PpsI	GAGTC	4 cut(s)	332, 649, 824, 1186
Ppu21I	YACGTR	1 cut(s)	919
PpuMI	RGGWCCY	1 cut(s)	1018
PshBI	ATTAAT	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	1018
Psp6I	CCWGG	2 cut(s)	155, 990
PspCI	CACGTG	1 cut(s)	919
PspEI	GGTNACC	1 cut(s)	1232
PspGI	CCWGG	2 cut(s)	155, 990
PspN4I	GGNNCC	5 cut(s)	161, 998, 1020, 1279, 1306
PspPI	GGNCC	5 cut(s)	187, 805, 1018, 1071, 1278
PspPPI	RGGWCCY	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	1304
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	7 cut(s)	539, 821, 911, 1004, 1128, 1157, 1421
RsaNI	GTAC	7 cut(s)	538, 820, 910, 1003, 1127, 1156, 1420
RseI	CAYNNNNRTG	3 cut(s)	867, 917, 1440
SacI	GAGCTC	1 cut(s)	459
SacII	CCGCGG	2 cut(s)	493, 896
SalI	GTCGAC	1 cut(s)	745
SaqAI	TTAA	3 cut(s)	29, 725, 858
SatI	GCNGC	8 cut(s)	19, 235, 277, 490, 493, 884, 893, 1294
Sau3AI	GATC	4 cut(s)	321, 414, 687, 1304
Sau96I	GGNCC	5 cut(s)	187, 805, 1018, 1071, 1278
ScaI	AGTACT	1 cut(s)	821
SchI	GAGTC	4 cut(s)	332, 650, 824, 1186
ScrFI	CCNGG	5 cut(s)	157, 356, 372, 835, 992
SduI	GDGCHC	7 cut(s)	99, 377, 408, 459, 1182, 1268, 1369
SfaNI	GCATC	8 cut(s)	100, 288, 512, 666, 786, 828, 1182, 1432
SfcI	CTRYAG	1 cut(s)	496
Sfr303I	CCGCGG	2 cut(s)	493, 896
SgrAI	CRCCGGYG	2 cut(s)	512, 1220
SgrBI	CCGCGG	2 cut(s)	493, 896
SinI	GGWCC	4 cut(s)	187, 1018, 1071, 1278
SmiMI	CAYNNNNRTG	3 cut(s)	867, 917, 1440
SmlI	CTYRAG	1 cut(s)	1168
SmoI	CTYRAG	1 cut(s)	1168
Sse9I	AATT	2 cut(s)	30, 1404
SseBI	AGGCCT	2 cut(s)	318, 1166
SspI	AATATT	1 cut(s)	1389
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	459
StuI	AGGCCT	2 cut(s)	318, 1166
StyD4I	CCNGG	5 cut(s)	155, 354, 370, 833, 990
StyI	CCWWGG	3 cut(s)	300, 1161, 1238
TaaI	ACNGT	3 cut(s)	1131, 1364, 1461
TaiI	ACGT	9 cut(s)	183, 510, 543, 573, 606, 627, 907, 921, 1104
TaqI	TCGA	8 cut(s)	219, 413, 483, 690, 729, 746, 1176, 1369
TasI	AATT	2 cut(s)	30, 1404
TatI	WGTACW	2 cut(s)	819, 1419
TauI	GCSGC	5 cut(s)	279, 492, 495, 895, 1296
TfiI	GAWTC	2 cut(s)	347, 753
Tru1I	TTAA	3 cut(s)	29, 725, 858
Tru9I	TTAA	3 cut(s)	29, 725, 858
TscAI	CASTG	4 cut(s)	203, 701, 1303, 1369
TseFI	GTSAC	6 cut(s)	331, 508, 844, 1036, 1189, 1232
TseI	GCWGC	3 cut(s)	18, 234, 883
Tsp45I	GTSAC	6 cut(s)	331, 508, 844, 1036, 1189, 1232
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	3 cut(s)	735, 1106, 1177
TspRI	CASTG	4 cut(s)	203, 701, 1303, 1369
VpaK11BI	GGWCC	4 cut(s)	187, 1018, 1071, 1278
VspI	ATTAAT	1 cut(s)	725
XbaI	TCTAGA	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XmiI	GTMKAC	1 cut(s)	746
XspI	CTAG	1 cut(s)	57
ZraI	GACGTC	1 cut(s)	181
ZrmI	AGTACT	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.