pycom01g20750

Dihydrodipicolinate reductase, C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012204
Physical Location & Seq
Forward (+)
19087873 .. 19089704
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGGCAGCACTGAGCTGCAAATTTCATCACCGTATGGTCTGCAAAAATTATAGACATGCCAAAGCGAAACCTTCCATCTGTTGCTCAATGCAGCCGTCACAAAACAGCATCAAGGTAATTATAAACGGAGCAGCGAAGGAAGTTGGAAGGGCGGCTGTAACTGCAGTGACCAGAGCTAGAGGAATGGAGGTGGCTGGTGCAGTGGACTCTTATCTCGTAGGAGAAGATTTTGGGAAGGATTTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTGTCTAACCTTGGCCAAATCTACAACAGAGAAGATATTTCAACCGATGTTCTAGTAAGCACAAGTACAAATTGTTGTTTATTGGTTCAAGTTTTATTCCTTGGATTGGAACTAATTACTATACTTTTATCGTATGTGCATAAGGTAAGGGGCCAAGTTCTGGGAGATGGAGTTCGAGTGCATAGCTTAGTCCTTCCAGGGCTTCCGGCTAGTACAACAGTTCATTTTTCTCGTCTCGGAGAGGTTTACTCTCTGAAACATGACATCACAGATGTGCAATGTCTCATGCCAGGCCTTCTCTTAGCAATCAGAAAGATTGTGCGCATAAAGAACCTGGTGTATGGCTTGGAGAAATTTTTATGA

Protein Analysis

213

Amino Acids

23.1

Weight (kDa)

9.11

Isoelectric Point (pI)

16.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DapB_C PF05173 79 - 212 3.4e-14 Dihydrodipicolinate reductase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52100
fragaria_vesca FvH4_7g29020 FvH4_7g29020
malus_domestica MD01G1197000.v1.1 MD01G1197100.v1.1 MD07G1264500.v1.1
prunus_persica Prupe.2G290400_v2.0.a1
pyrus_communis pycom01g20750 pycom07g24300
rosa_chinensis RchiOBHm_Chr1g0376731
rosa_laevigata RLG00000026575
rosa_multiflora Rmu_sc0003609.1_g000003
rosa_roxburghii Rroxscaffold_4G00281840
rosa_rugosa Rorug01G0397900
rosa_samantha Rh1AG415200 Rh1BG374800 Rh1CG388600
rosa_wichuraiana Rw0G004560 Rw1G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
Acc16I TGCGCA 1 cut(s) 599
AccB7I CCANNNNNTGG 1 cut(s) 436
AciI CCGC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 20, 629
AfaI GTAC 2 cut(s) 343, 490
AfiI CCNNNNNNNGG 2 cut(s) 382, 436
AgsI TTSAA 2 cut(s) 318, 365
AjnI CCWGG 3 cut(s) 472, 565, 609
AleI CACNNNNGTG 1 cut(s) 548
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
AluBI AGCT 3 cut(s) 15, 176, 462
AluI AGCT 3 cut(s) 15, 176, 462
Alw26I GTCTC 2 cut(s) 515, 563
AoxI GGCC 3 cut(s) 289, 427, 568
ApeKI GCWGC 4 cut(s) 5, 15, 91, 131
ApoI RAATTY 2 cut(s) 20, 629
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 20
BalI TGGCCA 1 cut(s) 291
BbvI GCAGC 4 cut(s) 2, 17, 103, 143
BccI CCATC 3 cut(s) 83, 253, 437
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 3 cut(s) 474, 567, 611
BcoDI GTCTC 2 cut(s) 515, 563
BfaI CTAG 3 cut(s) 177, 329, 486
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 5 cut(s) 6, 16, 92, 132, 153
BlsI GCNGC 5 cut(s) 7, 17, 93, 133, 154
Bme1390I CCNGG 3 cut(s) 474, 567, 611
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 3 cut(s) 474, 567, 611
BmsI GCATC 2 cut(s) 117, 244
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BsaJI CCNNGG 3 cut(s) 286, 376, 473
BsaXI ACNNNNNCTCC 4 cut(s) 432, 438, 462, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 436
Bse3DI GCAATG 1 cut(s) 560
BseBI CCWGG 3 cut(s) 474, 567, 611
BseDI CCNNGG 3 cut(s) 286, 376, 473
BseLI CCNNNNNNNGG 2 cut(s) 382, 436
BseMI GCAATG 1 cut(s) 560
BseXI GCAGC 4 cut(s) 2, 17, 103, 143
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 3 cut(s) 291, 429, 570
BsiSI CCGG 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 382, 436
BsmAI GTCTC 2 cut(s) 515, 563
BsmBI CGTCTC 1 cut(s) 515
BsnI GGCC 3 cut(s) 291, 429, 570
BspACI CCGC 1 cut(s) 152
BspANI GGCC 3 cut(s) 291, 429, 570
BspLI GGNNCC 1 cut(s) 428
BspMAI CTGCAG 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 286, 376, 473
BssT1I CCWWGG 2 cut(s) 286, 376
Bst2UI CCWGG 3 cut(s) 474, 567, 611
Bst4CI ACNGT 2 cut(s) 32, 496
BstDEI CTNAG 3 cut(s) 11, 463, 577
BstHHI GCGC 1 cut(s) 600
BstMAI GTCTC 2 cut(s) 515, 563
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 3 cut(s) 474, 567, 611
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 3 cut(s) 472, 565, 609
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 2, 17, 103, 143
BsuRI GGCC 3 cut(s) 291, 429, 570
BtsI GCAGTG 2 cut(s) 171, 207
BtsIMutI CAGTG 3 cut(s) 8, 171, 207
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 427
CsiI ACCWGGT 1 cut(s) 609
Csp6I GTAC 2 cut(s) 342, 489
CviAII CATG 3 cut(s) 56, 536, 562
CviQI GTAC 2 cut(s) 342, 489
DdeI CTNAG 3 cut(s) 11, 463, 577
EaeI YGGCCR 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 286, 376
Eco147I AGGCCT 1 cut(s) 570
EcoRII CCWGG 3 cut(s) 472, 565, 609
EcoT14I CCWWGG 2 cut(s) 286, 376
ErhI CCWWGG 2 cut(s) 286, 376
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 3 cut(s) 59, 539, 565
FatI CATG 3 cut(s) 55, 535, 561
Fnu4HI GCNGC 5 cut(s) 6, 16, 92, 132, 153
Fsp4HI GCNGC 5 cut(s) 6, 16, 92, 132, 153
FspAI RTGCGCAY 1 cut(s) 599
FspBI CTAG 3 cut(s) 177, 329, 486
FspI TGCGCA 1 cut(s) 599
GlaI GCGC 1 cut(s) 599
GluI GCNGC 5 cut(s) 6, 16, 92, 132, 153
HaeIII GGCC 3 cut(s) 291, 429, 570
HapII CCGG 1 cut(s) 482
HhaI GCGC 1 cut(s) 600
Hin1II CATG 3 cut(s) 59, 539, 565
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 482
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 205, 523
Hpy188I TCNGA 4 cut(s) 253, 515, 531, 587
Hpy8I GTNNAC 2 cut(s) 205, 523
HpyAV CCTTC 6 cut(s) 81, 130, 141, 229, 479, 581
HpyCH4III ACNGT 2 cut(s) 32, 496
HpyCH4V TGCA 9 cut(s) 18, 42, 91, 164, 200, 257, 415, 457, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 3 cut(s) 11, 463, 577
Hsp92II CATG 3 cut(s) 59, 539, 565
HspAI GCGC 1 cut(s) 598
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 4 cut(s) 2, 17, 103, 143
LweI GCATC 2 cut(s) 117, 244
MabI ACCWGGT 1 cut(s) 609
MaeI CTAG 3 cut(s) 177, 329, 486
MaeIII GTNAC 3 cut(s) 96, 157, 166
MboII GAAGA 2 cut(s) 236, 320
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 7 cut(s) 20, 46, 117, 264, 346, 390, 629
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 173, 181, 511
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 291
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 3 cut(s) 474, 567, 611
MvaI CCWGG 3 cut(s) 474, 567, 611
MwoI GCNNNNNNNGC 1 cut(s) 161
NlaIII CATG 3 cut(s) 59, 539, 565
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 2 cut(s) 96, 166
NsbI TGCGCA 1 cut(s) 599
NspI RCATGY 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 548
PceI AGGCCT 1 cut(s) 570
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 5 cut(s) 7, 17, 93, 133, 154
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PsiI TTATAA 1 cut(s) 122
Psp6I CCWGG 3 cut(s) 472, 565, 609
PspGI CCWGG 3 cut(s) 472, 565, 609
PspN4I GGNNCC 1 cut(s) 428
PspPI GGNCC 1 cut(s) 427
PstI CTGCAG 1 cut(s) 166
RsaI GTAC 2 cut(s) 343, 490
RsaNI GTAC 2 cut(s) 342, 489
RseI CAYNNNNRTG 1 cut(s) 548
SatI GCNGC 5 cut(s) 6, 16, 92, 132, 153
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 3 cut(s) 474, 567, 611
SexAI ACCWGGT 1 cut(s) 609
SfaNI GCATC 2 cut(s) 117, 244
SfcI CTRYAG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 548
Sse9I AATT 7 cut(s) 20, 46, 117, 264, 346, 390, 629
SseBI AGGCCT 1 cut(s) 570
SsiI CCGC 1 cut(s) 152
SspMI CTAG 3 cut(s) 177, 329, 486
StuI AGGCCT 1 cut(s) 570
StyD4I CCNGG 3 cut(s) 472, 565, 609
StyI CCWWGG 2 cut(s) 286, 376
TaaI ACNGT 2 cut(s) 32, 496
TaqI TCGA 1 cut(s) 451
TasI AATT 7 cut(s) 20, 46, 117, 264, 346, 390, 629
TatI WGTACW 2 cut(s) 341, 488
TauI GCSGC 1 cut(s) 155
TscAI CASTG 3 cut(s) 15, 171, 207
TseFI GTSAC 2 cut(s) 96, 166
TseI GCWGC 4 cut(s) 5, 15, 91, 131
Tsp45I GTSAC 2 cut(s) 96, 166
TspDTI ATGAA 2 cut(s) 14, 488
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 3 cut(s) 15, 171, 207
Van91I CCANNNNNTGG 1 cut(s) 436
XapI RAATTY 2 cut(s) 20, 629
XceI RCATGY 1 cut(s) 59
XspI CTAG 3 cut(s) 177, 329, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.