Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014434

Physical Location & Seq

Genomic Coordinates Reverse (-)

19226100 .. 19227032

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGGCATTGGGTATCTCACCCTTTATGTAATCGAAACATGATTTCTGCTCGTCTAGATGCTGTTTTTGAGATTGCAGAATCTATGGGGTCTTCCAAAGCTCCTCGGAATATTGAACAGCAAGATGCGGAAGATTCTTTTGGAAGCACAGAAAATTTGCAAGGAGATATAGTACGCTCTGAGCTGTTGAGGAAGTTGATATTGTCTGCTTCGTCATCCATTGTAGTTGGAAAAGCTGCAAAATTGTTATCTGCGCTCAACAAGGAAGCAGCTGACAGACAGGATCTATTAAACTTATCATCTCTGGTGGCCAATTTCCCGAGGAAGGAGGTTCAATTGGCAAATGAGAAATTGGACTCTCTCGTCAGTTTGTACCGGAAACAGCTTGTAACGCGCAAGTGGAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

137

Amino Acids

15.18

Weight (kDa)

9.2

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_III	PF05192	1 - 118	3.2e-06	MutS domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25540
fragaria_vesca	FvH4_7g29360
malus_domestica	MD07G1267600.v1.1
prunus_persica	Prupe.2G293300_v2.0.a1 Prupe.6G163500_v2.0.a1
pyrus_communis	pycom01g20970 pycom07g24520
rosa_chinensis	RchiOBHm_Chr1g0377121
rosa_laevigata	RLG00000026541
rosa_multiflora	Rmu_ssc0000155.1_g000018
rosa_roxburghii	Rroxscaffold_4G00281430
rosa_rugosa	Rorug01G0401600
rosa_samantha	Rh1AG419000 Rh1BG378100 Rh1CG392100 Rh1DG408800
rosa_wichuraiana	Rw1G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccII	CGCG	1 cut(s)	394
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	154, 403
AfaI	GTAC	2 cut(s)	174, 374
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	116, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	5 cut(s)	101, 184, 236, 272, 385
AluI	AGCT	5 cut(s)	101, 184, 236, 272, 385
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	236, 269
ApoI	RAATTY	2 cut(s)	154, 403
AspLEI	GCGC	2 cut(s)	256, 396
AsuHPI	GGTGA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	223, 281
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	237, 270
BlsI	GCNGC	2 cut(s)	238, 271
BmeT110I	CYCGRG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	49, 115
BpiI	GAAGAC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	104, 320
BsaWI	WCCGGW	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	104, 320
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	223, 281
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	325
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	394
BspPI	GGATC	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	104, 320
BssMI	GATC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	394
BstHHI	GCGC	2 cut(s)	256, 396
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	223, 281
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	256, 396
Csp6I	GTAC	2 cut(s)	173, 373
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	6 cut(s)	101, 184, 236, 272, 311, 385
CviKI_1	RGCY	6 cut(s)	101, 184, 236, 272, 311, 385
CviQI	GTAC	2 cut(s)	173, 373
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	403
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	28, 41, 86, 170
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	237, 270
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	237, 270
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	2 cut(s)	255, 395
GluI	GCNGC	2 cut(s)	237, 270
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	376
HhaI	GCGC	2 cut(s)	256, 396
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	2 cut(s)	254, 394
HinP1I	GCGC	2 cut(s)	254, 394
HinfI	GANTC	3 cut(s)	80, 134, 356
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	108, 181
Hpy188III	TCNNGA	3 cut(s)	56, 319, 408
HpyAV	CCTTC	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	77, 160, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	2 cut(s)	254, 394
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	266, 290, 389
Lsp1109I	GCAGC	2 cut(s)	223, 281
LweI	GCATC	2 cut(s)	49, 115
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	84, 143
MfeI	CAATTG	1 cut(s)	335
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	6 cut(s)	154, 242, 313, 335, 350, 403
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	4 cut(s)	114, 183, 315, 322
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	80, 134
PkrI	GCNGC	2 cut(s)	238, 271
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	174, 374
RsaNI	GTAC	2 cut(s)	173, 373
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	237, 270
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	350
SetI	ASST	6 cut(s)	103, 186, 238, 274, 333, 387
SfaNI	GCATC	2 cut(s)	49, 115
Sse9I	AATT	6 cut(s)	154, 242, 313, 335, 350, 403
SsiI	CCGC	1 cut(s)	128
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	56
TaqI	TCGA	1 cut(s)	34
TasI	AATT	6 cut(s)	154, 242, 313, 335, 350, 403
TfiI	GAWTC	2 cut(s)	80, 134
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TseI	GCWGC	2 cut(s)	236, 269
XapI	RAATTY	2 cut(s)	154, 403
XbaI	TCTAGA	1 cut(s)	55
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.