DNA mismatch repair
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25540 |
| fragaria_vesca | FvH4_7g29360 |
| malus_domestica | MD07G1267600.v1.1 |
| prunus_persica | Prupe.2G293300_v2.0.a1 Prupe.6G163500_v2.0.a1 |
| pyrus_communis | pycom01g20970 pycom07g24520 |
| rosa_chinensis | RchiOBHm_Chr1g0377121 |
| rosa_laevigata | RLG00000026541 |
| rosa_multiflora | Rmu_ssc0000155.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00281430 |
| rosa_rugosa | Rorug01G0401600 |
| rosa_samantha | Rh1AG419000 Rh1BG378100 Rh1CG392100 Rh1DG408800 |
| rosa_wichuraiana | Rw1G036750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2842 |
| Acc36I | ACCTGC | 3 cut(s) | 820, 1450, 3783 |
| Acc65I | GGTACC | 1 cut(s) | 891 |
| AccB1I | GGYRCC | 4 cut(s) | 164, 891, 2533, 3185 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1648 |
| AccBSI | CCGCTC | 1 cut(s) | 826 |
| AccI | GTMKAC | 3 cut(s) | 837, 2306, 2743 |
| AccII | CGCG | 5 cut(s) | 60, 353, 494, 923, 1474 |
| AccIII | TCCGGA | 1 cut(s) | 2492 |
| AclI | AACGTT | 1 cut(s) | 3636 |
| AclWI | GGATC | 9 cut(s) | 440, 947, 963, 1388, 1401, 1687, 1700, 2346, 3631 |
| AcoI | YGGCCR | 1 cut(s) | 2368 |
| AcuI | CTGAAG | 4 cut(s) | 1527, 2028, 2156, 3333 |
| AcyI | GRCGYC | 1 cut(s) | 2839 |
| AdeI | CACNNNGTG | 1 cut(s) | 182 |
| AfaI | GTAC | 7 cut(s) | 63, 854, 893, 1002, 1127, 3012, 3367 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 161, 419, 614, 990, 1648, 2942 |
| AflIII | ACRYGT | 2 cut(s) | 20, 1003 |
| AgeI | ACCGGT | 2 cut(s) | 629, 894 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 14, 1662 |
| AjiI | CACGTC | 1 cut(s) | 1006 |
| AjnI | CCWGG | 3 cut(s) | 2718, 3310, 3421 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1251, 1283, 3274, 3306, 3657, 3689 |
| Alw21I | GWGCWC | 2 cut(s) | 1501, 2234 |
| Alw26I | GTCTC | 4 cut(s) | 474, 1052, 1474, 2849 |
| AlwI | GGATC | 9 cut(s) | 440, 947, 963, 1388, 1401, 1687, 1700, 2346, 3631 |
| Aor13HI | TCCGGA | 1 cut(s) | 2492 |
| AoxI | GGCC | 9 cut(s) | 198, 725, 1074, 1083, 1096, 1650, 1718, 2368, 2933 |
| ApaI | GGGCCC | 1 cut(s) | 2937 |
| ApeKI | GCWGC | 5 cut(s) | 1819, 2291, 2324, 2657, 2711 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2288, 2320, 2559, 2591 |
| AseI | ATTAAT | 1 cut(s) | 2556 |
| AsiGI | ACCGGT | 2 cut(s) | 629, 894 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 279, 2814, 3696 |
| Asp718I | GGTACC | 1 cut(s) | 891 |
| AspA2I | CCTAGG | 1 cut(s) | 1702 |
| AspLEI | GCGC | 1 cut(s) | 397 |
| AspS9I | GGNCC | 9 cut(s) | 725, 1075, 1083, 1097, 1439, 1651, 2933, 2934, 3259 |
| AsuC2I | CCSGG | 2 cut(s) | 1091, 2846 |
| AsuII | TTCGAA | 1 cut(s) | 1403 |
| AsuNHI | GCTAGC | 1 cut(s) | 404 |
| AvaII | GGWCC | 2 cut(s) | 1439, 3259 |
| AvrII | CCTAGG | 1 cut(s) | 1702 |
| AxyI | CCTNAGG | 1 cut(s) | 2379 |
| BaeGI | GKGCMC | 2 cut(s) | 984, 2937 |
| BalI | TGGCCA | 1 cut(s) | 2370 |
| BamHI | GGATCC | 2 cut(s) | 1393, 1692 |
| BanI | GGYRCC | 4 cut(s) | 164, 891, 2533, 3185 |
| BanII | GRGCYC | 2 cut(s) | 89, 2937 |
| BauI | CACGAG | 2 cut(s) | 371, 689 |
| Bbv12I | GWGCWC | 2 cut(s) | 1501, 2234 |
| BbvI | GCAGC | 5 cut(s) | 1806, 2278, 2336, 2644, 2698 |
| BccI | CCATC | 9 cut(s) | 355, 520, 1241, 1249, 1790, 2128, 2360, 3038, 3194 |
| BceAI | ACGGC | 5 cut(s) | 185, 672, 712, 987, 1077 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 110, 144 |
| BciT130I | CCWGG | 3 cut(s) | 2720, 3312, 3423 |
| BciVI | GTATCC | 1 cut(s) | 3089 |
| BclI | TGATCA | 1 cut(s) | 1552 |
| BcnI | CCSGG | 2 cut(s) | 1091, 2846 |
| BcoDI | GTCTC | 4 cut(s) | 474, 1052, 1474, 2849 |
| BfaI | CTAG | 7 cut(s) | 405, 752, 1703, 1772, 2618, 2726, 3723 |
| BfmI | CTRYAG | 5 cut(s) | 886, 1820, 2342, 2520, 3239 |
| BfuAI | ACCTGC | 3 cut(s) | 820, 1450, 3783 |
| BfuI | GTATCC | 1 cut(s) | 3089 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1082 |
| BlnI | CCTAGG | 1 cut(s) | 1702 |
| BlpI | GCTNAGC | 1 cut(s) | 3468 |
| Bme1390I | CCNGG | 5 cut(s) | 1091, 2720, 2846, 3312, 3423 |
| Bme18I | GGWCC | 2 cut(s) | 1439, 3259 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 14, 1662 |
| BmgBI | CACGTC | 1 cut(s) | 1006 |
| BmgT120I | GGNCC | 9 cut(s) | 725, 1075, 1083, 1097, 1439, 1651, 2933, 2934, 3259 |
| BmrFI | CCNGG | 5 cut(s) | 1091, 2720, 2846, 3312, 3423 |
| BmrI | ACTGGG | 3 cut(s) | 1305, 1882, 2940 |
| BmtI | GCTAGC | 1 cut(s) | 408 |
| BmuI | ACTGGG | 3 cut(s) | 1305, 1882, 2940 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1454, 1486, 1796, 1828 |
| BpmI | CTGGAG | 2 cut(s) | 725, 1163 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3468 |
| Bpu14I | TTCGAA | 1 cut(s) | 1403 |
| BpuEI | CTTGAG | 3 cut(s) | 1367, 1711, 3762 |
| BpuMI | CCSGG | 2 cut(s) | 1091, 2846 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2825 |
| BsaHI | GRCGYC | 1 cut(s) | 2839 |
| BsaJI | CCNNGG | 7 cut(s) | 201, 211, 1078, 1090, 1702, 1947, 3310 |
| BsaWI | WCCGGW | 6 cut(s) | 253, 629, 894, 2273, 2492, 2577 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 177, 207, 1163, 1193, 2101, 2131, 3117, 3147 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 161, 419, 614, 990, 1648, 2942 |
| Bse118I | RCCGGY | 2 cut(s) | 629, 894 |
| Bse1I | ACTGG | 7 cut(s) | 1300, 1653, 1877, 2730, 2789, 2935, 3162 |
| Bse21I | CCTNAGG | 1 cut(s) | 2379 |
| Bse3DI | GCAATG | 3 cut(s) | 2130, 2979, 3771 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2825 |
| BseAI | TCCGGA | 1 cut(s) | 2492 |
| BseBI | CCWGG | 3 cut(s) | 2720, 3312, 3423 |
| BseDI | CCNNGG | 7 cut(s) | 201, 211, 1078, 1090, 1702, 1947, 3310 |
| BseJI | GATNNNNATC | 1 cut(s) | 2825 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 161, 419, 614, 990, 1648, 2942 |
| BseMI | GCAATG | 3 cut(s) | 2130, 2979, 3771 |
| BseNI | ACTGG | 7 cut(s) | 1300, 1653, 1877, 2730, 2789, 2935, 3162 |
| BseRI | GAGGAG | 4 cut(s) | 1187, 1351, 2207, 3451 |
| BseSI | GKGCMC | 2 cut(s) | 984, 2937 |
| BseXI | GCAGC | 5 cut(s) | 1806, 2278, 2336, 2644, 2698 |
| BseYI | CCCAGC | 2 cut(s) | 1025, 3619 |
| Bsh1236I | CGCG | 5 cut(s) | 60, 353, 494, 923, 1474 |
| Bsh1285I | CGRYCG | 1 cut(s) | 424 |
| BshFI | GGCC | 9 cut(s) | 200, 727, 1076, 1085, 1098, 1652, 1720, 2370, 2935 |
| BshNI | GGYRCC | 4 cut(s) | 164, 891, 2533, 3185 |
| BshTI | ACCGGT | 2 cut(s) | 629, 894 |
| BsiEI | CGRYCG | 1 cut(s) | 424 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1501, 2234 |
| BslFI | GGGAC | 2 cut(s) | 503, 1354 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 161, 419, 614, 990, 1648, 2942 |
| BsmAI | GTCTC | 4 cut(s) | 474, 1052, 1474, 2849 |
| BsmBI | CGTCTC | 2 cut(s) | 1052, 2849 |
| BsmFI | GGGAC | 2 cut(s) | 503, 1354 |
| BsmI | GAATGC | 3 cut(s) | 132, 2469, 3744 |
| BsnI | GGCC | 9 cut(s) | 200, 727, 1076, 1085, 1098, 1652, 1720, 2370, 2935 |
| Bsp119I | TTCGAA | 1 cut(s) | 1403 |
| Bsp120I | GGGCCC | 1 cut(s) | 2933 |
| Bsp1286I | GDGCHC | 5 cut(s) | 89, 984, 1501, 2234, 2937 |
| Bsp13I | TCCGGA | 1 cut(s) | 2492 |
| Bsp1407I | TGTACA | 2 cut(s) | 1000, 1125 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3468 |
| Bsp19I | CCATGG | 2 cut(s) | 1078, 1947 |
| BspANI | GGCC | 9 cut(s) | 200, 727, 1076, 1085, 1098, 1652, 1720, 2370, 2935 |
| BspEI | TCCGGA | 1 cut(s) | 2492 |
| BspFNI | CGCG | 5 cut(s) | 60, 353, 494, 923, 1474 |
| BspHI | TCATGA | 2 cut(s) | 1617, 2481 |
| BspMAI | CTGCAG | 1 cut(s) | 1824 |
| BspMI | ACCTGC | 3 cut(s) | 820, 1450, 3783 |
| BspOI | GCTAGC | 1 cut(s) | 408 |
| BspPI | GGATC | 9 cut(s) | 440, 947, 963, 1388, 1401, 1687, 1700, 2346, 3631 |
| BspT104I | TTCGAA | 1 cut(s) | 1403 |
| BspT107I | GGYRCC | 4 cut(s) | 164, 891, 2533, 3185 |
| BsrBI | CCGCTC | 1 cut(s) | 826 |
| BsrDI | GCAATG | 3 cut(s) | 2130, 2979, 3771 |
| BsrFI | RCCGGY | 2 cut(s) | 629, 894 |
| BsrGI | TGTACA | 2 cut(s) | 1000, 1125 |
| BsrI | ACTGG | 7 cut(s) | 1300, 1653, 1877, 2730, 2789, 2935, 3162 |
| BssAI | RCCGGY | 2 cut(s) | 629, 894 |
| BssECI | CCNNGG | 7 cut(s) | 201, 211, 1078, 1090, 1702, 1947, 3310 |
| BssNI | GRCGYC | 1 cut(s) | 2839 |
| BssSI | CACGAG | 2 cut(s) | 371, 689 |
| BssT1I | CCWWGG | 4 cut(s) | 211, 1078, 1702, 1947 |
| Bst2BI | CACGAG | 2 cut(s) | 371, 689 |
| Bst2UI | CCWGG | 3 cut(s) | 2720, 3312, 3423 |
| Bst4CI | ACNGT | 6 cut(s) | 962, 1493, 2227, 2575, 2644, 3077 |
| Bst6I | CTCTTC | 3 cut(s) | 211, 468, 2184 |
| BstACI | GRCGYC | 1 cut(s) | 2839 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 138, 3464 |
| BstAUI | TGTACA | 2 cut(s) | 1000, 1125 |
| BstBI | TTCGAA | 1 cut(s) | 1403 |
| BstC8I | GCNNGC | 4 cut(s) | 406, 2157, 3151, 3465 |
| BstDSI | CCRYGG | 3 cut(s) | 201, 1078, 1947 |
| BstEII | GGTNACC | 1 cut(s) | 2067 |
| BstFNI | CGCG | 5 cut(s) | 60, 353, 494, 923, 1474 |
| BstHHI | GCGC | 1 cut(s) | 397 |
| BstMAI | GTCTC | 4 cut(s) | 474, 1052, 1474, 2849 |
| BstMCI | CGRYCG | 1 cut(s) | 424 |
| BstNI | CCWGG | 3 cut(s) | 2720, 3312, 3423 |
| BstNSI | RCATGY | 3 cut(s) | 24, 2159, 3038 |
| BstPI | GGTNACC | 1 cut(s) | 2067 |
| BstSCI | CCNGG | 5 cut(s) | 1089, 2718, 2844, 3310, 3421 |
| BstSFI | CTRYAG | 5 cut(s) | 886, 1820, 2342, 2520, 3239 |
| BstSLI | GKGCMC | 2 cut(s) | 984, 2937 |
| BstUI | CGCG | 5 cut(s) | 60, 353, 494, 923, 1474 |
| BstV1I | GCAGC | 5 cut(s) | 1806, 2278, 2336, 2644, 2698 |
| BstX2I | RGATCY | 6 cut(s) | 445, 939, 1393, 1692, 2338, 3623 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3505 |
| BstYI | RGATCY | 6 cut(s) | 445, 939, 1393, 1692, 2338, 3623 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2379 |
| BsuI | GTATCC | 1 cut(s) | 3089 |
| BsuRI | GGCC | 9 cut(s) | 200, 727, 1076, 1085, 1098, 1652, 1720, 2370, 2935 |
| BtgI | CCRYGG | 3 cut(s) | 201, 1078, 1947 |
| BtrI | CACGTC | 1 cut(s) | 1006 |
| BtsI | GCAGTG | 1 cut(s) | 1829 |
| BtsIMutI | CAGTG | 9 cut(s) | 1646, 1829, 1870, 2232, 2640, 2796, 3155, 3324, 3578 |
| BveI | ACCTGC | 3 cut(s) | 820, 1450, 3783 |
| Cac8I | GCNNGC | 4 cut(s) | 406, 2157, 3151, 3465 |
| CciI | TCATGA | 2 cut(s) | 1617, 2481 |
| CfoI | GCGC | 1 cut(s) | 397 |
| Cfr10I | RCCGGY | 2 cut(s) | 629, 894 |
| Cfr13I | GGNCC | 9 cut(s) | 725, 1075, 1083, 1097, 1439, 1651, 2933, 2934, 3259 |
| CseI | GACGC | 3 cut(s) | 269, 500, 1147 |
| Csp6I | GTAC | 7 cut(s) | 62, 853, 892, 1001, 1126, 3011, 3366 |
| CspAI | ACCGGT | 2 cut(s) | 629, 894 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1474, 1509, 2926, 2961, 3622, 3657 |
| CviQI | GTAC | 7 cut(s) | 62, 853, 892, 1001, 1126, 3011, 3366 |
| DraIII | CACNNNGTG | 1 cut(s) | 182 |
| DriI | GACNNNNNGTC | 2 cut(s) | 14, 1662 |
| EaeI | YGGCCR | 1 cut(s) | 2368 |
| Eam1104I | CTCTTC | 3 cut(s) | 211, 468, 2184 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 14, 1662 |
| EarI | CTCTTC | 3 cut(s) | 211, 468, 2184 |
| EciI | GGCGGA | 1 cut(s) | 1166 |
| Eco130I | CCWWGG | 4 cut(s) | 211, 1078, 1702, 1947 |
| Eco24I | GRGCYC | 2 cut(s) | 89, 2937 |
| Eco32I | GATATC | 3 cut(s) | 128, 159, 663 |
| Eco47I | GGWCC | 2 cut(s) | 1439, 3259 |
| Eco57I | CTGAAG | 4 cut(s) | 1527, 2028, 2156, 3333 |
| Eco81I | CCTNAGG | 1 cut(s) | 2379 |
| Eco91I | GGTNACC | 1 cut(s) | 2067 |
| EcoO65I | GGTNACC | 1 cut(s) | 2067 |
| EcoRI | GAATTC | 4 cut(s) | 2428, 2477, 3305, 3692 |
| EcoRII | CCWGG | 3 cut(s) | 2718, 3310, 3421 |
| EcoRV | GATATC | 3 cut(s) | 128, 159, 663 |
| EcoT14I | CCWWGG | 4 cut(s) | 211, 1078, 1702, 1947 |
| EcoT22I | ATGCAT | 1 cut(s) | 3257 |
| EcoT38I | GRGCYC | 2 cut(s) | 89, 2937 |
| ErhI | CCWWGG | 4 cut(s) | 211, 1078, 1702, 1947 |
| Esp3I | CGTCTC | 2 cut(s) | 1052, 2849 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 384, 416, 3680, 3712 |
| FaqI | GGGAC | 2 cut(s) | 503, 1354 |
| FauI | CCCGC | 2 cut(s) | 1467, 3639 |
| FbaI | TGATCA | 1 cut(s) | 1552 |
| FblI | GTMKAC | 3 cut(s) | 837, 2306, 2743 |
| FriOI | GRGCYC | 2 cut(s) | 89, 2937 |
| FspBI | CTAG | 7 cut(s) | 405, 752, 1703, 1772, 2618, 2726, 3723 |
| GlaI | GCGC | 1 cut(s) | 396 |
| GsaI | CCCAGC | 2 cut(s) | 1029, 3623 |
| GsuI | CTGGAG | 2 cut(s) | 725, 1163 |
| HaeIII | GGCC | 9 cut(s) | 200, 727, 1076, 1085, 1098, 1652, 1720, 2370, 2935 |
| HgaI | GACGC | 3 cut(s) | 269, 500, 1147 |
| HhaI | GCGC | 1 cut(s) | 397 |
| Hin1I | GRCGYC | 1 cut(s) | 2839 |
| Hin6I | GCGC | 1 cut(s) | 395 |
| HinP1I | GCGC | 1 cut(s) | 395 |
| HincII | GTYRAC | 1 cut(s) | 838 |
| HindII | GTYRAC | 1 cut(s) | 838 |
| HindIII | AAGCTT | 1 cut(s) | 1962 |
| Hpy166II | GTNNAC | 6 cut(s) | 152, 838, 1003, 1128, 2307, 2744 |
| Hpy8I | GTNNAC | 6 cut(s) | 152, 838, 1003, 1128, 2307, 2744 |
| Hpy99I | CGWCG | 3 cut(s) | 499, 839, 1141 |
| HpyAV | CCTTC | 7 cut(s) | 508, 789, 1126, 1706, 2058, 2547, 3486 |
| HpyCH4III | ACNGT | 6 cut(s) | 962, 1493, 2227, 2575, 2644, 3077 |
| HpyCH4IV | ACGT | 3 cut(s) | 1005, 2839, 3636 |
| HpySE526I | ACGT | 3 cut(s) | 1005, 2839, 3636 |
| Hsp92I | GRCGYC | 1 cut(s) | 2839 |
| HspAI | GCGC | 1 cut(s) | 395 |
| Kpn2I | TCCGGA | 1 cut(s) | 2492 |
| KpnI | GGTACC | 1 cut(s) | 895 |
| Ksp22I | TGATCA | 1 cut(s) | 1552 |
| LmnI | GCTCC | 7 cut(s) | 211, 268, 753, 823, 1462, 1706, 1817 |
| Lsp1109I | GCAGC | 5 cut(s) | 1806, 2278, 2336, 2644, 2698 |
| MaeI | CTAG | 7 cut(s) | 405, 752, 1703, 1772, 2618, 2726, 3723 |
| MaeII | ACGT | 3 cut(s) | 1005, 2839, 3636 |
| MbiI | CCGCTC | 1 cut(s) | 826 |
| MfeI | CAATTG | 2 cut(s) | 2408, 3139 |
| MflI | RGATCY | 6 cut(s) | 445, 939, 1393, 1692, 2338, 3623 |
| MhlI | GDGCHC | 5 cut(s) | 89, 984, 1501, 2234, 2937 |
| MlsI | TGGCCA | 1 cut(s) | 2370 |
| MluNI | TGGCCA | 1 cut(s) | 2370 |
| MlyI | GAGTC | 1 cut(s) | 1814 |
| MmeI | TCCRAC | 3 cut(s) | 2454, 3021, 3106 |
| Mox20I | TGGCCA | 1 cut(s) | 2370 |
| Mph1103I | ATGCAT | 1 cut(s) | 3257 |
| MroI | TCCGGA | 1 cut(s) | 2492 |
| MroXI | GAANNNNTTC | 3 cut(s) | 279, 2814, 3696 |
| MscI | TGGCCA | 1 cut(s) | 2370 |
| MseI | TTAA | 6 cut(s) | 381, 1977, 2313, 2550, 2556, 3660 |
| MslI | CAYNNNNRTG | 6 cut(s) | 413, 1739, 2486, 3059, 3201, 3503 |
| Msp20I | TGGCCA | 1 cut(s) | 2370 |
| MspA1I | CMGCKG | 2 cut(s) | 2327, 3371 |
| MspR9I | CCNGG | 5 cut(s) | 1091, 2720, 2846, 3312, 3423 |
| MunI | CAATTG | 2 cut(s) | 2408, 3139 |
| Mva1269I | GAATGC | 3 cut(s) | 132, 2469, 3744 |
| MvaI | CCWGG | 3 cut(s) | 2720, 3312, 3423 |
| MvnI | CGCG | 5 cut(s) | 60, 353, 494, 923, 1474 |
| NciI | CCSGG | 2 cut(s) | 1091, 2846 |
| NcoI | CCATGG | 2 cut(s) | 1078, 1947 |
| NheI | GCTAGC | 1 cut(s) | 404 |
| NmeAIII | GCCGAG | 2 cut(s) | 2725, 3563 |
| NmuCI | GTSAC | 6 cut(s) | 16, 226, 2067, 2840, 3268, 3397 |
| NsiI | ATGCAT | 1 cut(s) | 3257 |
| NspI | RCATGY | 3 cut(s) | 24, 2159, 3038 |
| NspV | TTCGAA | 1 cut(s) | 1403 |
| PaeI | GCATGC | 1 cut(s) | 2159 |
| PagI | TCATGA | 2 cut(s) | 1617, 2481 |
| PciI | ACATGT | 1 cut(s) | 20 |
| PctI | GAATGC | 3 cut(s) | 132, 2469, 3744 |
| PdmI | GAANNNNTTC | 3 cut(s) | 279, 2814, 3696 |
| PfeI | GAWTC | 9 cut(s) | 245, 280, 1614, 1831, 1943, 2097, 2682, 3447, 3652 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1648 |
| PinAI | ACCGGT | 2 cut(s) | 629, 894 |
| PleI | GAGTC | 1 cut(s) | 1813 |
| PpsI | GAGTC | 1 cut(s) | 1813 |
| PscI | ACATGT | 1 cut(s) | 20 |
| PshBI | ATTAAT | 1 cut(s) | 2556 |
| Psp1406I | AACGTT | 1 cut(s) | 3636 |
| Psp6I | CCWGG | 3 cut(s) | 2718, 3310, 3421 |
| PspEI | GGTNACC | 1 cut(s) | 2067 |
| PspFI | CCCAGC | 2 cut(s) | 1025, 3619 |
| PspGI | CCWGG | 3 cut(s) | 2718, 3310, 3421 |
| PspOMI | GGGCCC | 1 cut(s) | 2933 |
| PspPI | GGNCC | 9 cut(s) | 725, 1075, 1083, 1097, 1439, 1651, 2933, 2934, 3259 |
| PstI | CTGCAG | 1 cut(s) | 1824 |
| PsuI | RGATCY | 6 cut(s) | 445, 939, 1393, 1692, 2338, 3623 |
| PvuII | CAGCTG | 1 cut(s) | 2327 |
| RsaI | GTAC | 7 cut(s) | 63, 854, 893, 1002, 1127, 3012, 3367 |
| RsaNI | GTAC | 7 cut(s) | 62, 853, 892, 1001, 1126, 3011, 3366 |
| RseI | CAYNNNNRTG | 6 cut(s) | 413, 1739, 2486, 3059, 3201, 3503 |
| SalI | GTCGAC | 1 cut(s) | 836 |
| SaqAI | TTAA | 6 cut(s) | 381, 1977, 2313, 2550, 2556, 3660 |
| Sau96I | GGNCC | 9 cut(s) | 725, 1075, 1083, 1097, 1439, 1651, 2933, 2934, 3259 |
| SchI | GAGTC | 1 cut(s) | 1814 |
| ScrFI | CCNGG | 5 cut(s) | 1091, 2720, 2846, 3312, 3423 |
| SduI | GDGCHC | 5 cut(s) | 89, 984, 1501, 2234, 2937 |
| SfcI | CTRYAG | 5 cut(s) | 886, 1820, 2342, 2520, 3239 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1082 |
| SfuI | TTCGAA | 1 cut(s) | 1403 |
| SinI | GGWCC | 2 cut(s) | 1439, 3259 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 413, 1739, 2486, 3059, 3201, 3503 |
| SmlI | CTYRAG | 3 cut(s) | 1346, 1726, 3777 |
| SmoI | CTYRAG | 3 cut(s) | 1346, 1726, 3777 |
| SphI | GCATGC | 1 cut(s) | 2159 |
| SspI | AATATT | 1 cut(s) | 2693 |
| SspMI | CTAG | 7 cut(s) | 405, 752, 1703, 1772, 2618, 2726, 3723 |
| StyD4I | CCNGG | 5 cut(s) | 1089, 2718, 2844, 3310, 3421 |
| StyI | CCWWGG | 4 cut(s) | 211, 1078, 1702, 1947 |
| TaaI | ACNGT | 6 cut(s) | 962, 1493, 2227, 2575, 2644, 3077 |
| TaiI | ACGT | 3 cut(s) | 1008, 2842, 3639 |
| TaqI | TCGA | 9 cut(s) | 7, 136, 424, 584, 603, 837, 1292, 1403, 3058 |
| TaqII | GACCGA | 2 cut(s) | 410, 1070 |
| TatI | WGTACW | 2 cut(s) | 1000, 1125 |
| TauI | GCSGC | 5 cut(s) | 829, 926, 1067, 1098, 1151 |
| TfiI | GAWTC | 9 cut(s) | 245, 280, 1614, 1831, 1943, 2097, 2682, 3447, 3652 |
| Tru1I | TTAA | 6 cut(s) | 381, 1977, 2313, 2550, 2556, 3660 |
| Tru9I | TTAA | 6 cut(s) | 381, 1977, 2313, 2550, 2556, 3660 |
| TscAI | CASTG | 9 cut(s) | 1653, 1829, 1877, 2232, 2647, 2796, 3162, 3324, 3585 |
| TseFI | GTSAC | 6 cut(s) | 16, 226, 2067, 2840, 3268, 3397 |
| TseI | GCWGC | 5 cut(s) | 1819, 2291, 2324, 2657, 2711 |
| Tsp45I | GTSAC | 6 cut(s) | 16, 226, 2067, 2840, 3268, 3397 |
| TspGWI | ACGGA | 2 cut(s) | 512, 1445 |
| TspRI | CASTG | 9 cut(s) | 1653, 1829, 1877, 2232, 2647, 2796, 3162, 3324, 3585 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1648 |
| VpaK11BI | GGWCC | 2 cut(s) | 1439, 3259 |
| VspI | ATTAAT | 1 cut(s) | 2556 |
| XceI | RCATGY | 3 cut(s) | 24, 2159, 3038 |
| XmaJI | CCTAGG | 1 cut(s) | 1702 |
| XmiI | GTMKAC | 3 cut(s) | 837, 2306, 2743 |
| XmnI | GAANNNNTTC | 3 cut(s) | 279, 2814, 3696 |
| XspI | CTAG | 7 cut(s) | 405, 752, 1703, 1772, 2618, 2726, 3723 |
| ZraI | GACGTC | 1 cut(s) | 2840 |
| Zsp2I | ATGCAT | 1 cut(s) | 3257 |