Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014434

Physical Location & Seq

Genomic Coordinates Forward (+)

50954647 .. 50955102

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0401600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTCTTGTGGAAGACAAGCGCGCAGGTGCTGAGATTGTGCATGGAGCTCAAGAGTGCTACCAACAGTCCATAGATCTCTTGGAAGAGCTGGGATTTCCCAAAGGTGTTCTTCCCCTGCAAGACCTGGTGGAGTGTGGAAGGGTGAAGGAAACTGGGTTTGTGTGGATGAAGCAGAAGGCGCCATACGAGCACTTCTTCGTTGGGTCGAACACGCGTGTGAGCTACGCGACTGAGGTGACTGCGTATGTGGAGAAGGGCAGGATGAAGAAGATGACTGGGATCAAGAGCAAGCAGGTGTTTCTTTGGGTGCCTATTAGTGAGATGACCATGGAAGAGCCAGCAACCAAGAAGATCACTTTCAAGACTCCGATGGGGCTCGGAAGGACTTTTCCGGTCACGGCTTTCATGACCGAGGAGGAGAAGCAGAAGTATCTGGAGAATAGTAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

151

Amino Acids

17.19

Weight (kDa)

6.19

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	26 - 136	2.8e-31	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25540
fragaria_vesca	FvH4_7g29360
malus_domestica	MD07G1267600.v1.1
prunus_persica	Prupe.2G293300_v2.0.a1 Prupe.6G163500_v2.0.a1
pyrus_communis	pycom01g20970 pycom07g24520
rosa_chinensis	RchiOBHm_Chr1g0377121
rosa_laevigata	RLG00000026541
rosa_multiflora	Rmu_ssc0000155.1_g000018
rosa_roxburghii	Rroxscaffold_4G00281430
rosa_rugosa	Rorug01G0401600
rosa_samantha	Rh1AG419000 Rh1BG378100 Rh1CG392100 Rh1DG408800
rosa_wichuraiana	Rw1G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	17, 286
Acc36I	ACCTGC	2 cut(s)	17, 286
AccB1I	GGYRCC	2 cut(s)	181, 310
AccII	CGCG	3 cut(s)	24, 217, 230
AclWI	GGATC	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	126
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	50, 91, 225
AluI	AGCT	3 cut(s)	50, 91, 225
Alw21I	GWGCWC	2 cut(s)	52, 195
AlwI	GGATC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	24, 26, 184
AsuHPI	GGTGA	2 cut(s)	157, 250
BanI	GGYRCC	2 cut(s)	181, 310
BanII	GRGCYC	2 cut(s)	52, 381
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	52, 195
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	185
BfuAI	ACCTGC	2 cut(s)	17, 286
BglII	AGATCT	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	183, 312
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	2 cut(s)	165, 288
BmuI	ACTGGG	2 cut(s)	165, 288
BpiI	GAAGAC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	330, 414
BsaWI	WCCGGW	1 cut(s)	394
Bse1I	ACTGG	2 cut(s)	160, 283
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	330, 414
BseGI	GGATG	2 cut(s)	174, 270
BseMII	CTCAG	2 cut(s)	24, 225
BseNI	ACTGG	2 cut(s)	160, 283
BsePI	GCGCGC	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	431, 434
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	3 cut(s)	24, 217, 230
BshNI	GGYRCC	2 cut(s)	181, 310
BsiHKAI	GWGCWC	2 cut(s)	52, 195
BsiSI	CCGG	1 cut(s)	395
Bsp1286I	GDGCHC	3 cut(s)	52, 195, 381
Bsp143I	GATC	3 cut(s)	76, 282, 354
Bsp19I	CCATGG	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	25, 226
BspFNI	CGCG	3 cut(s)	24, 217, 230
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	183, 312
BspMI	ACCTGC	2 cut(s)	17, 286
BspPI	GGATC	1 cut(s)	290
BspQI	GCTCTTC	2 cut(s)	81, 330
BspT107I	GGYRCC	2 cut(s)	181, 310
BsrI	ACTGG	2 cut(s)	160, 283
BssECI	CCNNGG	2 cut(s)	330, 414
BssHII	GCGCGC	1 cut(s)	22
BssMI	GATC	3 cut(s)	76, 282, 354
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	81, 330
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	24, 293, 342
BstDEI	CTNAG	2 cut(s)	33, 234
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	174, 270
BstFNI	CGCG	3 cut(s)	24, 217, 230
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	3 cut(s)	24, 26, 184
BstKTI	GATC	3 cut(s)	79, 285, 357
BstMBI	GATC	3 cut(s)	76, 282, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 190
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	3 cut(s)	24, 217, 230
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	174, 270
BveI	ACCTGC	2 cut(s)	17, 286
Cac8I	GCNNGC	3 cut(s)	24, 293, 342
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	3 cut(s)	24, 26, 184
CsiI	ACCWGGT	1 cut(s)	126
CviAII	CATG	3 cut(s)	44, 331, 409
CviJI	RGCY	7 cut(s)	5, 50, 91, 225, 340, 379, 404
CviKI_1	RGCY	7 cut(s)	5, 50, 91, 225, 340, 379, 404
DdeI	CTNAG	2 cut(s)	33, 234
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	3 cut(s)	78, 284, 356
DpnII	GATC	3 cut(s)	76, 282, 354
Eam1104I	CTCTTC	2 cut(s)	81, 330
EarI	CTCTTC	2 cut(s)	81, 330
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	2 cut(s)	52, 381
Eco53kI	GAGCTC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	2 cut(s)	52, 381
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	47, 334, 412
FaiI	YATR	6 cut(s)	45, 74, 187, 249, 332, 410
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	3 cut(s)	43, 330, 408
FokI	GGATG	2 cut(s)	181, 277
FriOI	GRGCYC	2 cut(s)	52, 381
GlaI	GCGC	3 cut(s)	23, 25, 183
GsaI	CCCAGC	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	185
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	3 cut(s)	24, 26, 184
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	47, 334, 412
Hin6I	GCGC	3 cut(s)	22, 24, 182
HinP1I	GCGC	3 cut(s)	22, 24, 182
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	2 cut(s)	157, 250
Hpy188I	TCNGA	2 cut(s)	372, 383
Hpy188III	TCNNGA	5 cut(s)	53, 286, 364, 409, 437
HpyAV	CCTTC	5 cut(s)	135, 142, 172, 250, 378
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	43, 121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 190
HpyF3I	CTNAG	2 cut(s)	33, 234
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	47, 334, 412
HspAI	GCGC	3 cut(s)	22, 24, 182
KasI	GGCGCC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	76, 282, 354
LguI	GCTCTTC	2 cut(s)	81, 330
LmnI	GCTCC	1 cut(s)	47
MabI	ACCWGGT	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	238, 397
MalI	GATC	3 cut(s)	78, 284, 356
MboI	GATC	3 cut(s)	76, 282, 354
MboII	GAAGA	8 cut(s)	26, 98, 104, 190, 280, 283, 347, 364
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	3 cut(s)	52, 195, 381
MluI	ACGCGT	1 cut(s)	215
Mly113I	GGCGCC	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	3 cut(s)	229, 409, 412
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	3 cut(s)	24, 217, 230
MwoI	GCNNNNNNNGC	2 cut(s)	181, 190
NarI	GGCGCC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	76, 282, 354
NlaIII	CATG	3 cut(s)	47, 334, 412
NlaIV	GGNNCC	2 cut(s)	183, 312
NmuCI	GTSAC	2 cut(s)	238, 397
OliI	CACNNNNGTG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	408
PaqCI	CACCTGC	2 cut(s)	17, 286
PauI	GCGCGC	1 cut(s)	22
PciSI	GCTCTTC	2 cut(s)	81, 330
PleI	GAGTC	1 cut(s)	361
PluTI	GGCGCC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	183, 312
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	76
PteI	GCGCGC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	52
SapI	GCTCTTC	2 cut(s)	81, 330
Sau3AI	GATC	3 cut(s)	76, 282, 354
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	3 cut(s)	52, 195, 381
SetI	ASST	8 cut(s)	31, 52, 93, 109, 129, 227, 240, 300
SexAI	ACCWGGT	1 cut(s)	126
SfoI	GGCGCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SspDI	GGCGCC	1 cut(s)	181
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	209
TaqII	GACCGA	1 cut(s)	428
TseFI	GTSAC	2 cut(s)	238, 397
Tsp45I	GTSAC	2 cut(s)	238, 397
TspDTI	ATGAA	3 cut(s)	185, 281, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.