Rh1CG392100

DNA mismatch repair

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
65982439 .. 65988677
6239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG392100.1

Sequence Viewer

Length: 3495 bp
ATGCATTTTGAATTTCATAGTTGGTACACACACGACATGTCGCTTGTCCCATCCAATACGACATTACGACCTGAACCGAGCGCGCCAAATCAACAAAACCGTCCTCCTCCTTCATCACTCTCTTCACTCCCCAAAACCCCAAAAACCATCGCTGCAAATTCCCCAATGGGAAAGCAAAAGCAGCAAGTATTATCGCGCTTCTTCGCGCCCAAATCCAAACCCCAAAACCCTCCATCCTCTTCTTCTTCTATTCCCCCACCCTTAAACCCTAACAACCCACCAACGCCACCGCCCAAAATCACAGCCACCGTCACCTACTCACCCTCCAAGCGCCTCCTCTCCTCCCAACTCACCTCTTCCCCAAAACCCACCAAACTCCCCAAGCTCTCTCCCCACACCCACAACCCTATACCCCCCACACCCAATCCCTCCCTCCACCAGAAGCTCCTAGAACCCTCCACCAACATCCCCCAACCTTCTTCCACCCCCAATCCCTCAAACCCTAATCTCACACCTTTGGAGCGGCAGGTCGTCGACCTGAAAAAGAGGTACTCTGACGTGCTTCTAATGGTGGAAGTCGGTTACAGGTACCGGTTTTTCGGAGAAGATGCGGAAATCGCGGCGATAATTTTGGGGATTTATGCACACATGGATCATAGTTTCTTGACGGCGAGTGTGCCCACTTTCCGGCTGAATGTCCACGTCAGGAGGCTGGTGAGTGCTGGGTATAAGGTGGGGGTGGTGAAGCAGACCGAGACCGCGGCGATCAAGGCCCACGGGGCGAACCGGGGCGGCCCGTTTGGGAGGGGGTTGTCGGCATTGTACACGAAGGCGACGCTGGAGGCGGCGGAGGATGTGGGGGGAGGGGAGGAGGGGTGTGGTGGGGAGAGTAGTTACTTGGCTTGTGTGGTGGATGAGAGTGGGAATGTGGGTTGTGGAGGTGATGGGGGGATGGAAATTAGGATTGGGATTGTTGCGGTGGAGATTTCGACTGGGGATGTTGTGTATGGAGAGTTTAGTGATAATTTTTTGAGGAGTGGGCTTGAGGCTTTTGTGGTGAGCTTGTCTCCTGCTGAGTTGCTTCTGGGGGATCCACTTTCGAAACAAACCGAGAAGATGTTACTTGCTTTTGCTGGACCTGCTTCAAATGTCCGCGTGGAGCGTGTCTCGCGGGATTGCTTCAAAGACGGTGGTGCTCTGGCTGAAGTAATGTCTTTATATGAAAACATGGATGAAGATAATTTAGGCGATCAAACAAAGATAAATTCAGAGGTTATAGAAAAGGGTAATCATGACATGGGAATTGAGGGAATCATGAAATTGCCAAATTTGGCAGTCCAAGCACTGGCCCTAACTATTCGTCATCTGAAACAATTTGGTTTAGAAAGGATCCTTCACCTAGGAGCTTCTTTCAGGCCATTCTCAAGCAACATGGAAATGACTCTCTCAGCCAATGCACTTCAACAACTAGAGGTATTGAAGAACAGCAATGATGGGTCTGAGTCTGGCTCCTTGCTGCAGTGTATGAATCATACTCTTACCATATATGGTTCAAGGCTTCTTAGACACTGGGTAACTCACCCTTTATGTGATAGAAACATGATTTCTGCTCGTCTTGATGCTGTTTCTGAGATTGCAGAATCCATGGGGTCATCTAAAGCTTGTCAGATTATTAAAGGGGGAGATGCAGATGATTGTCACGTAACAATCTTGAAACCAGAGTTCAATTATATACTTTCTTCAGTTCTTACAACTCTGGGAAGGTCACCTGATATTCAGCGTGGGATAACAAGAATCTTTCATCGGACTGCCACTCCATCTGAGTTCATTGCAGTTATTCAAGCTATTTTGCATGCCGGAAAACAACTTCAGCAACTTCAAATTGAAGAGGAGGGAAGTGAAAAATTTTTGGGAGGAAAGACAGTGTGCTCTGAGCTGTTGAGGAAGTTGATATTGACTGCTTCATCATCCAGTATAATTGGAAATGCTGCAAAACTTTTGTCTACACTTAACAAAGAAGCAGCTGACCAACAGGATCTACAGAACCTAATCGCCATTTCTGATGGCCAATTTCCTGAGGTTGCTAAAGCAAGAAAGGAGGTTCAATTGGCAAATGAGAAATTGAATTCTCTCATTGGGTTATACCGCAAACAGCTTGGAATGCGTAAGTTGGAATTCATGAGTGTGTCCGGAACAACACACTTGATAGAGTTGGCTGTAGATGTAAAGGTGCCTTCAACTTGGGTTAAGATTAATAGCACCAAAAAAACAGTCCGGTATCACCCACCTGATGTCTTGACTGCTTTAGATCATCTAGCCCTTGCAAAAGAGGAACTCACTGTTGCCTGTCGTGCTGCTTGGGATAGCTTTCTAAGTGGATTCAGTAAATATTATGCCGAGTTTCAAGCTGCTATTCAGGCACTAGCCAGTTTAGATTGTCTACATTCACTTGCTGTGCTTTCAAGAAATAAGAACTATGTTCGTCCAGTGTTCGTATATGATGATGAACCTGTTCAGATACATATCTGTTCTGGACGTCACCCGGTTTTAGAGACGACATTACAGGACAACTTTGTTCCAAATGACACAGATTTACATACTGACAGAGAGTATTGTCAGATAATTACTGGGCCCAACATGGGTGGAAAGAGTTGTTACATTCGTCAAGTTGCTCTCATTGCTATTATGGCACAGGTTGGCTCGTTTGTACCAGCATCATTGGCAAAACTGCATGTGTTGGATGGCATCTACACTCGAATGGGTGCTTCTGACAGTATCCAACAAGGGAGAAGCACCTTTCTTGAAGAACTAAGCGAGGCATCACACATACTCCACAATTGCACAGCACGCTCACTGGTTATCATTGATGAGCTTGGGAGAGGCACCAGCACACACGATGGTGTGGCTATTGCTTACGCTACATTACATCATTTGCTACAGCAGAAAAGATGCATGGTCCTCTTTGTCACGCACTATCCAAAAATTGCTTCTATCAGAACTGAATTCCCAGGCTCAGTGGGGGCTTACCATGTTTCTTACCTGACTTCAGAACGGGATAGAGGTATAGTGGACATGACATCTGAAAATGAAGATGTCACATACTTGTATAAACTTGTGCCTGGTGTTTCAGAGAGGAGTTTTGGATTCAAGGTTGCAGAGCTTGCTCAGCTACCTTCCTCTTGCATCAGACGAGCCACTTTCATGGCTGATAGGTTGGAGGCAGTAGTAAGAAGCCGAGAAAGAAATAGATATGGCAACAAGAGGTTGCTAAAATCACTGACAATAGATAAAAAAGAAGAAGTGCAAGAGGAAATGCTGGGATCTCCCACCAACGTTTGTGGACGGGAGAATCAGGTTAAAGAAGATAAAATTAGCGGTGAATACAAGGAATTCTTTCTAAATCTGAAAACTGCAATATCTAGTGATGACCTTACAAAAAGCATTCAGTATTTGAACCATGCAAGAAGCATTGCACAAGAATTAGTAAGCAGGTAG

Protein Analysis

1164

Amino Acids

127.79

Weight (kDa)

7.22

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MutS_I PF01624 171 - 281 7.8e-24 MutS domain I
MutS_II PF05188 320 - 463 2.3e-07 MutS domain II
MutS_III PF05192 485 - 818 3.7e-35 MutS domain III
MutS_V PF00488 873 - 1073 4.3e-69 MutS domain V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25540
fragaria_vesca FvH4_7g29360
malus_domestica MD07G1267600.v1.1
prunus_persica Prupe.2G293300_v2.0.a1 Prupe.6G163500_v2.0.a1
pyrus_communis pycom01g20970 pycom07g24520
rosa_chinensis RchiOBHm_Chr1g0377121
rosa_laevigata RLG00000026541
rosa_multiflora Rmu_ssc0000155.1_g000018
rosa_roxburghii Rroxscaffold_4G00281430
rosa_rugosa Rorug01G0401600
rosa_samantha Rh1AG419000 Rh1BG378100 Rh1CG392100 Rh1DG408800
rosa_wichuraiana Rw1G036750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2539
Acc36I ACCTGC 3 cut(s) 517, 1147, 3480
Acc65I GGTACC 1 cut(s) 588
AccB1I GGYRCC 3 cut(s) 588, 2230, 2882
AccB7I CCANNNNNTGG 1 cut(s) 1345
AccBSI CCGCTC 1 cut(s) 523
AccI GTMKAC 3 cut(s) 534, 2003, 2440
AccII CGCG 7 cut(s) 83, 196, 206, 620, 761, 1155, 1171
AccIII TCCGGA 1 cut(s) 2189
AclI AACGTT 1 cut(s) 3333
AclWI GGATC 7 cut(s) 660, 1085, 1098, 1384, 1397, 2043, 3328
AcoI YGGCCR 1 cut(s) 2065
AcsI RAATTY 9 cut(s) 11, 157, 1264, 1327, 1904, 2125, 2174, 3002, 3389
AcuI CTGAAG 4 cut(s) 1224, 1725, 1853, 3030
AcyI GRCGYC 1 cut(s) 2536
AfaI GTAC 5 cut(s) 26, 551, 590, 824, 2709
AfiI CCNNNNNNNGG 3 cut(s) 687, 1345, 2639
AflIII ACRYGT 1 cut(s) 36
AgeI ACCGGT 1 cut(s) 591
AjiI CACGTC 2 cut(s) 559, 703
AjnI CCWGG 2 cut(s) 3007, 3118
AjuI GAANNNNNNNTTGG 4 cut(s) 948, 980, 2971, 3003
AleI CACNNNNGTG 1 cut(s) 2898
Alw21I GWGCWC 2 cut(s) 1198, 1931
Alw26I GTCTC 4 cut(s) 749, 1071, 1171, 2546
AlwI GGATC 7 cut(s) 660, 1085, 1098, 1384, 1397, 2043, 3328
Aor13HI TCCGGA 1 cut(s) 2189
AoxI GGCC 6 cut(s) 771, 793, 1347, 1415, 2065, 2630
ApaI GGGCCC 1 cut(s) 2634
ApeKI GCWGC 7 cut(s) 152, 181, 1516, 1988, 2021, 2354, 2408
ApoI RAATTY 9 cut(s) 11, 157, 1264, 1327, 1904, 2125, 2174, 3002, 3389
ArsI GACNNNNNNTTYG 4 cut(s) 1985, 2017, 2256, 2288
AseI ATTAAT 1 cut(s) 2253
AsiGI ACCGGT 1 cut(s) 591
Asp700I GAANNNNTTC 2 cut(s) 2511, 3393
Asp718I GGTACC 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 1399
AspLEI GCGC 5 cut(s) 83, 85, 198, 208, 333
AspS9I GGNCC 7 cut(s) 772, 794, 1136, 1348, 2630, 2631, 2956
AsuC2I CCSGG 2 cut(s) 788, 2543
AsuII TTCGAA 1 cut(s) 1100
AvaII GGWCC 2 cut(s) 1136, 2956
AvrII CCTAGG 1 cut(s) 1399
AxyI CCTNAGG 1 cut(s) 2076
BaeGI GKGCMC 2 cut(s) 681, 2634
BalI TGGCCA 1 cut(s) 2067
BamHI GGATCC 2 cut(s) 1090, 1389
BanI GGYRCC 3 cut(s) 588, 2230, 2882
BanII GRGCYC 1 cut(s) 2634
Bbv12I GWGCWC 2 cut(s) 1198, 1931
BbvI GCAGC 7 cut(s) 139, 193, 1503, 1975, 2033, 2341, 2395
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 2 cut(s) 3009, 3120
BciVI GTATCC 1 cut(s) 2786
BcnI CCSGG 2 cut(s) 788, 2543
BcoDI GTCTC 4 cut(s) 749, 1071, 1171, 2546
BfaI CTAG 6 cut(s) 449, 1400, 1469, 2315, 2423, 3420
BfmI CTRYAG 4 cut(s) 1517, 2039, 2217, 2936
BfoI RGCGCY 1 cut(s) 334
BfuAI ACCTGC 3 cut(s) 517, 1147, 3480
BfuI GTATCC 1 cut(s) 2786
BglI GCCNNNNNGGC 1 cut(s) 779
BlnI CCTAGG 1 cut(s) 1399
BlpI GCTNAGC 1 cut(s) 3165
Bme1390I CCNGG 4 cut(s) 788, 2543, 3009, 3120
Bme18I GGWCC 2 cut(s) 1136, 2956
BmgBI CACGTC 2 cut(s) 559, 703
BmgT120I GGNCC 7 cut(s) 772, 794, 1136, 1348, 2630, 2631, 2956
BmiI GGNNCC 7 cut(s) 590, 1092, 1391, 1510, 2232, 2632, 2884
BmrFI CCNGG 4 cut(s) 788, 2543, 3009, 3120
BmrI ACTGGG 3 cut(s) 1002, 1579, 2637
BmsI GCATC 8 cut(s) 598, 1609, 1675, 2723, 2754, 2828, 2939, 3192
BmuI ACTGGG 3 cut(s) 1002, 1579, 2637
BplI GAGNNNNNCTC 6 cut(s) 1051, 1083, 1151, 1183, 1493, 1525
BpmI CTGGAG 1 cut(s) 860
Bpu1102I GCTNAGC 1 cut(s) 3165
Bpu14I TTCGAA 1 cut(s) 1100
BpuEI CTTGAG 2 cut(s) 1064, 1408
BpuMI CCSGG 2 cut(s) 788, 2543
BsaAI YACGTR 1 cut(s) 1702
BsaBI GATNNNNATC 1 cut(s) 2522
BsaHI GRCGYC 1 cut(s) 2536
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 6 cut(s) 759, 775, 787, 1399, 1644, 3007
BsaWI WCCGGW 3 cut(s) 591, 2189, 2274
BsaXI ACNNNNNCTCC 8 cut(s) 308, 338, 860, 890, 1798, 1828, 2814, 2844
Bsc4I CCNNNNNNNGG 3 cut(s) 687, 1345, 2639
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 8 cut(s) 997, 1350, 1574, 1971, 2427, 2486, 2632, 2859
Bse21I CCTNAGG 1 cut(s) 2076
Bse3DI GCAATG 4 cut(s) 1495, 1827, 2676, 3468
Bse8I GATNNNNATC 1 cut(s) 2522
BseAI TCCGGA 1 cut(s) 2189
BseBI CCWGG 2 cut(s) 3009, 3120
BseDI CCNNGG 6 cut(s) 759, 775, 787, 1399, 1644, 3007
BseJI GATNNNNATC 1 cut(s) 2522
BseLI CCNNNNNNNGG 3 cut(s) 687, 1345, 2639
BseMI GCAATG 4 cut(s) 1495, 1827, 2676, 3468
BseMII CTCAG 9 cut(s) 1065, 1461, 1491, 1620, 1812, 1923, 2067, 3027, 3179
BseNI ACTGG 8 cut(s) 997, 1350, 1574, 1971, 2427, 2486, 2632, 2859
BsePI GCGCGC 1 cut(s) 81
BseRI GAGGAG 7 cut(s) 96, 326, 331, 884, 1048, 1904, 3148
BseSI GKGCMC 2 cut(s) 681, 2634
BseXI GCAGC 7 cut(s) 139, 193, 1503, 1975, 2033, 2341, 2395
BseYI CCCAGC 2 cut(s) 722, 3316
Bsh1236I CGCG 7 cut(s) 83, 196, 206, 620, 761, 1155, 1171
BshFI GGCC 6 cut(s) 773, 795, 1349, 1417, 2067, 2632
BshNI GGYRCC 3 cut(s) 588, 2230, 2882
BshTI ACCGGT 1 cut(s) 591
BsiHKAI GWGCWC 2 cut(s) 1198, 1931
BsiSI CCGG 7 cut(s) 592, 688, 787, 1857, 2190, 2275, 2543
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 687, 1345, 2639
BsmAI GTCTC 4 cut(s) 749, 1071, 1171, 2546
BsmBI CGTCTC 1 cut(s) 2546
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 2 cut(s) 2166, 3441
BsnI GGCC 6 cut(s) 773, 795, 1349, 1417, 2067, 2632
Bso31I GGTCTC 1 cut(s) 749
Bsp119I TTCGAA 1 cut(s) 1100
Bsp120I GGGCCC 1 cut(s) 2630
Bsp1286I GDGCHC 4 cut(s) 681, 1198, 1931, 2634
Bsp13I TCCGGA 1 cut(s) 2189
Bsp1407I TGTACA 1 cut(s) 822
Bsp143I GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
Bsp1720I GCTNAGC 1 cut(s) 3165
Bsp19I CCATGG 1 cut(s) 1644
BspANI GGCC 6 cut(s) 773, 795, 1349, 1417, 2067, 2632
BspCNI CTCAG 9 cut(s) 1066, 1460, 1492, 1621, 1813, 1924, 2068, 3026, 3178
BspEI TCCGGA 1 cut(s) 2189
BspFNI CGCG 7 cut(s) 83, 196, 206, 620, 761, 1155, 1171
BspHI TCATGA 3 cut(s) 1291, 1314, 2178
BspLI GGNNCC 7 cut(s) 590, 1092, 1391, 1510, 2232, 2632, 2884
BspMAI CTGCAG 1 cut(s) 1521
BspMI ACCTGC 3 cut(s) 517, 1147, 3480
BspPI GGATC 7 cut(s) 660, 1085, 1098, 1384, 1397, 2043, 3328
BspT104I TTCGAA 1 cut(s) 1100
BspT107I GGYRCC 3 cut(s) 588, 2230, 2882
BspTNI GGTCTC 1 cut(s) 749
BsrBI CCGCTC 1 cut(s) 523
BsrDI GCAATG 4 cut(s) 1495, 1827, 2676, 3468
BsrFI RCCGGY 1 cut(s) 591
BsrGI TGTACA 1 cut(s) 822
BsrI ACTGG 8 cut(s) 997, 1350, 1574, 1971, 2427, 2486, 2632, 2859
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 6 cut(s) 759, 775, 787, 1399, 1644, 3007
BssHII GCGCGC 1 cut(s) 81
BssMI GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
BssNI GRCGYC 1 cut(s) 2536
BssT1I CCWWGG 2 cut(s) 1399, 1644
Bst2UI CCWGG 2 cut(s) 3009, 3120
Bst4CI ACNGT 7 cut(s) 101, 310, 1190, 1924, 2272, 2341, 2774
Bst6I CTCTTC 4 cut(s) 127, 244, 361, 1881
BstACI GRCGYC 1 cut(s) 2536
BstAPI GCANNNNNTGC 1 cut(s) 3161
BstAUI TGTACA 1 cut(s) 822
BstBAI YACGTR 1 cut(s) 1702
BstBI TTCGAA 1 cut(s) 1100
BstC8I GCNNGC 4 cut(s) 83, 1854, 2848, 3162
BstDSI CCRYGG 3 cut(s) 759, 775, 1644
BstEII GGTNACC 1 cut(s) 1764
BstFNI CGCG 7 cut(s) 83, 196, 206, 620, 761, 1155, 1171
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 5 cut(s) 83, 85, 198, 208, 333
BstKTI GATC 8 cut(s) 655, 768, 1093, 1252, 1392, 2038, 2311, 3323
BstMAI GTCTC 4 cut(s) 749, 1071, 1171, 2546
BstMBI GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
BstNI CCWGG 2 cut(s) 3009, 3120
BstNSI RCATGY 3 cut(s) 40, 1856, 2735
BstPI GGTNACC 1 cut(s) 1764
BstSCI CCNGG 4 cut(s) 786, 2541, 3007, 3118
BstSFI CTRYAG 4 cut(s) 1517, 2039, 2217, 2936
BstSLI GKGCMC 2 cut(s) 681, 2634
BstUI CGCG 7 cut(s) 83, 196, 206, 620, 761, 1155, 1171
BstV1I GCAGC 7 cut(s) 139, 193, 1503, 1975, 2033, 2341, 2395
BstX2I RGATCY 4 cut(s) 1090, 1389, 2035, 3320
BstXI CCANNNNNNTGG 1 cut(s) 3202
BstYI RGATCY 4 cut(s) 1090, 1389, 2035, 3320
Bsu36I CCTNAGG 1 cut(s) 2076
BsuI GTATCC 1 cut(s) 2786
BsuRI GGCC 6 cut(s) 773, 795, 1349, 1417, 2067, 2632
BtgI CCRYGG 3 cut(s) 759, 775, 1644
BtgZI GCGATG 1 cut(s) 133
BtrI CACGTC 2 cut(s) 559, 703
BtsI GCAGTG 1 cut(s) 1526
BtsIMutI CAGTG 9 cut(s) 1343, 1526, 1567, 1929, 2337, 2493, 2852, 3021, 3275
BveI ACCTGC 3 cut(s) 517, 1147, 3480
Cac8I GCNNGC 4 cut(s) 83, 1854, 2848, 3162
CciI TCATGA 3 cut(s) 1291, 1314, 2178
CfoI GCGC 5 cut(s) 83, 85, 198, 208, 333
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 7 cut(s) 772, 794, 1136, 1348, 2630, 2631, 2956
Cfr42I CCGCGG 1 cut(s) 762
CseI GACGC 1 cut(s) 844
Csp6I GTAC 5 cut(s) 25, 550, 589, 823, 2708
CspAI ACCGGT 1 cut(s) 591
CspCI CAANNNNNGTGG 6 cut(s) 1171, 1206, 2623, 2658, 3319, 3354
CviQI GTAC 5 cut(s) 25, 550, 589, 823, 2708
DpnI GATC 8 cut(s) 654, 767, 1092, 1251, 1391, 2037, 2310, 3322
DpnII GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
EaeI YGGCCR 1 cut(s) 2065
Eam1104I CTCTTC 4 cut(s) 127, 244, 361, 1881
EarI CTCTTC 4 cut(s) 127, 244, 361, 1881
EciI GGCGGA 1 cut(s) 863
Eco130I CCWWGG 2 cut(s) 1399, 1644
Eco24I GRGCYC 1 cut(s) 2634
Eco31I GGTCTC 1 cut(s) 749
Eco47I GGWCC 2 cut(s) 1136, 2956
Eco57I CTGAAG 4 cut(s) 1224, 1725, 1853, 3030
Eco81I CCTNAGG 1 cut(s) 2076
Eco91I GGTNACC 1 cut(s) 1764
EcoO65I GGTNACC 1 cut(s) 1764
EcoRI GAATTC 4 cut(s) 2125, 2174, 3002, 3389
EcoRII CCWGG 2 cut(s) 3007, 3118
EcoT14I CCWWGG 2 cut(s) 1399, 1644
EcoT22I ATGCAT 2 cut(s) 6, 2954
EcoT38I GRGCYC 1 cut(s) 2634
ErhI CCWWGG 2 cut(s) 1399, 1644
Esp3I CGTCTC 1 cut(s) 2546
FalI AAGNNNNNCTT 2 cut(s) 3377, 3409
FaqI GGGAC 1 cut(s) 32
FauI CCCGC 1 cut(s) 1164
FblI GTMKAC 3 cut(s) 534, 2003, 2440
FriOI GRGCYC 1 cut(s) 2634
FspBI CTAG 6 cut(s) 449, 1400, 1469, 2315, 2423, 3420
GlaI GCGC 5 cut(s) 82, 84, 197, 207, 332
GsaI CCCAGC 2 cut(s) 726, 3320
GsuI CTGGAG 1 cut(s) 860
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 6 cut(s) 773, 795, 1349, 1417, 2067, 2632
HapII CCGG 7 cut(s) 592, 688, 787, 1857, 2190, 2275, 2543
HgaI GACGC 1 cut(s) 844
HhaI GCGC 5 cut(s) 83, 85, 198, 208, 333
Hin1I GRCGYC 1 cut(s) 2536
Hin6I GCGC 5 cut(s) 81, 83, 196, 206, 331
HinP1I GCGC 5 cut(s) 81, 83, 196, 206, 331
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 1659
HinfI GANTC 9 cut(s) 1311, 1441, 1502, 1528, 1640, 1794, 2379, 3144, 3349
HpaII CCGG 7 cut(s) 592, 688, 787, 1857, 2190, 2275, 2543
Hpy166II GTNNAC 8 cut(s) 27, 535, 700, 825, 2004, 2441, 3070, 3341
Hpy8I GTNNAC 8 cut(s) 27, 535, 700, 825, 2004, 2441, 3070, 3341
Hpy99I CGWCG 2 cut(s) 536, 838
HpyAV CCTTC 7 cut(s) 120, 486, 823, 1403, 1755, 2244, 3183
HpyCH4III ACNGT 7 cut(s) 101, 310, 1190, 1924, 2272, 2341, 2774
HpyCH4IV ACGT 5 cut(s) 558, 702, 1701, 2536, 3333
HpySE526I ACGT 5 cut(s) 558, 702, 1701, 2536, 3333
Hsp92I GRCGYC 1 cut(s) 2536
HspAI GCGC 5 cut(s) 81, 83, 196, 206, 331
Kpn2I TCCGGA 1 cut(s) 2189
KpnI GGTACC 1 cut(s) 592
KspI CCGCGG 1 cut(s) 762
Kzo9I GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
LmnI GCTCC 5 cut(s) 450, 520, 1159, 1403, 1514
Lsp1109I GCAGC 7 cut(s) 139, 193, 1503, 1975, 2033, 2341, 2395
LweI GCATC 8 cut(s) 598, 1609, 1675, 2723, 2754, 2828, 2939, 3192
MaeI CTAG 6 cut(s) 449, 1400, 1469, 2315, 2423, 3420
MaeII ACGT 5 cut(s) 558, 702, 1701, 2536, 3333
MalI GATC 8 cut(s) 654, 767, 1092, 1251, 1391, 2037, 2310, 3322
MbiI CCGCTC 1 cut(s) 523
MboI GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
MfeI CAATTG 2 cut(s) 2105, 2836
MflI RGATCY 4 cut(s) 1090, 1389, 2035, 3320
MhlI GDGCHC 4 cut(s) 681, 1198, 1931, 2634
MlsI TGGCCA 1 cut(s) 2067
MluNI TGGCCA 1 cut(s) 2067
MlyI GAGTC 2 cut(s) 1435, 1511
MmeI TCCRAC 4 cut(s) 2151, 2718, 2803, 3195
Mox20I TGGCCA 1 cut(s) 2067
Mph1103I ATGCAT 2 cut(s) 6, 2954
MroI TCCGGA 1 cut(s) 2189
MroXI GAANNNNTTC 2 cut(s) 2511, 3393
MscI TGGCCA 1 cut(s) 2067
MseI TTAA 6 cut(s) 263, 1674, 2010, 2247, 2253, 3357
MslI CAYNNNNRTG 5 cut(s) 1436, 2183, 2756, 2898, 3200
Msp20I TGGCCA 1 cut(s) 2067
MspA1I CMGCKG 2 cut(s) 761, 2024
MspI CCGG 7 cut(s) 592, 688, 787, 1857, 2190, 2275, 2543
MspR9I CCNGG 4 cut(s) 788, 2543, 3009, 3120
MunI CAATTG 2 cut(s) 2105, 2836
Mva1269I GAATGC 2 cut(s) 2166, 3441
MvaI CCWGG 2 cut(s) 3009, 3120
MvnI CGCG 7 cut(s) 83, 196, 206, 620, 761, 1155, 1171
NciI CCSGG 2 cut(s) 788, 2543
NcoI CCATGG 1 cut(s) 1644
NdeII GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
NlaIV GGNNCC 7 cut(s) 590, 1092, 1391, 1510, 2232, 2632, 2884
NmeAIII GCCGAG 2 cut(s) 2422, 3260
NmuCI GTSAC 6 cut(s) 310, 1697, 1764, 2537, 2965, 3094
NsiI ATGCAT 2 cut(s) 6, 2954
NspI RCATGY 3 cut(s) 40, 1856, 2735
NspV TTCGAA 1 cut(s) 1100
OliI CACNNNNGTG 1 cut(s) 2898
PaeI GCATGC 1 cut(s) 1856
PagI TCATGA 3 cut(s) 1291, 1314, 2178
PauI GCGCGC 1 cut(s) 81
PciI ACATGT 1 cut(s) 36
PctI GAATGC 2 cut(s) 2166, 3441
PdmI GAANNNNTTC 2 cut(s) 2511, 3393
PfeI GAWTC 7 cut(s) 1311, 1528, 1640, 1794, 2379, 3144, 3349
PflMI CCANNNNNTGG 1 cut(s) 1345
PinAI ACCGGT 1 cut(s) 591
PleI GAGTC 2 cut(s) 1435, 1510
PpsI GAGTC 2 cut(s) 1435, 1510
Ppu21I YACGTR 1 cut(s) 1702
PscI ACATGT 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 2253
Psp1406I AACGTT 1 cut(s) 3333
Psp6I CCWGG 2 cut(s) 3007, 3118
PspEI GGTNACC 1 cut(s) 1764
PspFI CCCAGC 2 cut(s) 722, 3316
PspGI CCWGG 2 cut(s) 3007, 3118
PspN4I GGNNCC 7 cut(s) 590, 1092, 1391, 1510, 2232, 2632, 2884
PspOMI GGGCCC 1 cut(s) 2630
PspPI GGNCC 7 cut(s) 772, 794, 1136, 1348, 2630, 2631, 2956
PstI CTGCAG 1 cut(s) 1521
PsuI RGATCY 4 cut(s) 1090, 1389, 2035, 3320
PteI GCGCGC 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 2024
RsaI GTAC 5 cut(s) 26, 551, 590, 824, 2709
RsaNI GTAC 5 cut(s) 25, 550, 589, 823, 2708
RseI CAYNNNNRTG 5 cut(s) 1436, 2183, 2756, 2898, 3200
SacII CCGCGG 1 cut(s) 762
SalI GTCGAC 1 cut(s) 533
SaqAI TTAA 6 cut(s) 263, 1674, 2010, 2247, 2253, 3357
Sau3AI GATC 8 cut(s) 652, 765, 1090, 1249, 1389, 2035, 2308, 3320
Sau96I GGNCC 7 cut(s) 772, 794, 1136, 1348, 2630, 2631, 2956
SchI GAGTC 2 cut(s) 1435, 1511
ScrFI CCNGG 4 cut(s) 788, 2543, 3009, 3120
SduI GDGCHC 4 cut(s) 681, 1198, 1931, 2634
SfaNI GCATC 8 cut(s) 598, 1609, 1675, 2723, 2754, 2828, 2939, 3192
SfcI CTRYAG 4 cut(s) 1517, 2039, 2217, 2936
Sfr303I CCGCGG 1 cut(s) 762
SfuI TTCGAA 1 cut(s) 1100
SgrBI CCGCGG 1 cut(s) 762
SinI GGWCC 2 cut(s) 1136, 2956
SmiMI CAYNNNNRTG 5 cut(s) 1436, 2183, 2756, 2898, 3200
SmlI CTYRAG 2 cut(s) 1043, 1423
SmoI CTYRAG 2 cut(s) 1043, 1423
SphI GCATGC 1 cut(s) 1856
SspI AATATT 1 cut(s) 2390
SspMI CTAG 6 cut(s) 449, 1400, 1469, 2315, 2423, 3420
StyD4I CCNGG 4 cut(s) 786, 2541, 3007, 3118
StyI CCWWGG 2 cut(s) 1399, 1644
TaaI ACNGT 7 cut(s) 101, 310, 1190, 1924, 2272, 2341, 2774
TaiI ACGT 5 cut(s) 561, 705, 1704, 2539, 3336
TaqI TCGA 4 cut(s) 534, 989, 1100, 2755
TaqII GACCGA 1 cut(s) 767
TatI WGTACW 1 cut(s) 822
TauI GCSGC 5 cut(s) 526, 623, 764, 795, 848
TfiI GAWTC 7 cut(s) 1311, 1528, 1640, 1794, 2379, 3144, 3349
Tru1I TTAA 6 cut(s) 263, 1674, 2010, 2247, 2253, 3357
Tru9I TTAA 6 cut(s) 263, 1674, 2010, 2247, 2253, 3357
TscAI CASTG 9 cut(s) 1350, 1526, 1574, 1929, 2344, 2493, 2859, 3021, 3282
TseFI GTSAC 6 cut(s) 310, 1697, 1764, 2537, 2965, 3094
TseI GCWGC 7 cut(s) 152, 181, 1516, 1988, 2021, 2354, 2408
Tsp45I GTSAC 6 cut(s) 310, 1697, 1764, 2537, 2965, 3094
TspRI CASTG 9 cut(s) 1350, 1526, 1574, 1929, 2344, 2493, 2859, 3021, 3282
Van91I CCANNNNNTGG 1 cut(s) 1345
VpaK11BI GGWCC 2 cut(s) 1136, 2956
VspI ATTAAT 1 cut(s) 2253
XapI RAATTY 9 cut(s) 11, 157, 1264, 1327, 1904, 2125, 2174, 3002, 3389
XceI RCATGY 3 cut(s) 40, 1856, 2735
XmaJI CCTAGG 1 cut(s) 1399
XmiI GTMKAC 3 cut(s) 534, 2003, 2440
XmnI GAANNNNTTC 2 cut(s) 2511, 3393
XspI CTAG 6 cut(s) 449, 1400, 1469, 2315, 2423, 3420
ZraI GACGTC 1 cut(s) 2537
Zsp2I ATGCAT 2 cut(s) 6, 2954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.