DNA mismatch repair
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25540 |
| fragaria_vesca | FvH4_7g29360 |
| malus_domestica | MD07G1267600.v1.1 |
| prunus_persica | Prupe.2G293300_v2.0.a1 Prupe.6G163500_v2.0.a1 |
| pyrus_communis | pycom01g20970 pycom07g24520 |
| rosa_chinensis | RchiOBHm_Chr1g0377121 |
| rosa_laevigata | RLG00000026541 |
| rosa_multiflora | Rmu_ssc0000155.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00281430 |
| rosa_rugosa | Rorug01G0401600 |
| rosa_samantha | Rh1AG419000 Rh1BG378100 Rh1CG392100 Rh1DG408800 |
| rosa_wichuraiana | Rw1G036750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 589, 1159 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2044 |
| Acc36I | ACCTGC | 2 cut(s) | 589, 1159 |
| AccB1I | GGYRCC | 1 cut(s) | 2308 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1426 |
| AccBSI | CCGCTC | 1 cut(s) | 1029 |
| AccII | CGCG | 3 cut(s) | 120, 387, 1236 |
| AccIII | TCCGGA | 1 cut(s) | 625 |
| AclWI | GGATC | 6 cut(s) | 64, 732, 1465, 1478, 1585, 2124 |
| AcoI | YGGCCR | 2 cut(s) | 1530, 2143 |
| AcsI | RAATTY | 6 cut(s) | 506, 1383, 1789, 2252, 3080, 3347 |
| AcuI | CTGAAG | 4 cut(s) | 1305, 1526, 1806, 2184 |
| AcyI | GRCGYC | 1 cut(s) | 1730 |
| AfaI | GTAC | 6 cut(s) | 662, 2007, 2222, 2338, 2920, 3104 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1426, 2095, 2319, 2717, 3308, 3309 |
| AgeI | ACCGGT | 2 cut(s) | 663, 2587 |
| AjiI | CACGTC | 1 cut(s) | 775 |
| AjnI | CCWGG | 2 cut(s) | 3085, 3196 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1029, 1061, 2475, 2507 |
| Alw21I | GWGCWC | 1 cut(s) | 2969 |
| Alw26I | GTCTC | 3 cut(s) | 418, 1252, 2624 |
| AlwI | GGATC | 6 cut(s) | 64, 732, 1465, 1478, 1585, 2124 |
| Aor13HI | TCCGGA | 1 cut(s) | 625 |
| AoxI | GGCC | 5 cut(s) | 29, 1428, 1496, 1530, 2143 |
| ApeKI | GCWGC | 8 cut(s) | 595, 692, 1509, 1597, 2069, 2102, 2432, 2486 |
| ApoI | RAATTY | 6 cut(s) | 506, 1383, 1789, 2252, 3080, 3347 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2066, 2098, 2334, 2366 |
| AseI | ATTAAT | 1 cut(s) | 2331 |
| AsiGI | ACCGGT | 2 cut(s) | 663, 2587 |
| AspA2I | CCTAGG | 1 cut(s) | 1480 |
| AspLEI | GCGC | 5 cut(s) | 120, 122, 389, 621, 1540 |
| AspS9I | GGNCC | 7 cut(s) | 866, 1217, 1429, 1497, 2590, 2708, 3034 |
| AsuC2I | CCSGG | 2 cut(s) | 796, 860 |
| AsuHPI | GGTGA | 9 cut(s) | 799, 826, 1088, 1140, 1331, 1652, 1839, 2335, 2351 |
| AvaII | GGWCC | 5 cut(s) | 866, 1217, 2590, 2708, 3034 |
| AvrII | CCTAGG | 1 cut(s) | 1480 |
| AxyI | CCTNAGG | 1 cut(s) | 2154 |
| BaeGI | GKGCMC | 1 cut(s) | 2313 |
| BalI | TGGCCA | 1 cut(s) | 2145 |
| BamHI | GGATCC | 1 cut(s) | 1470 |
| BanI | GGYRCC | 1 cut(s) | 2308 |
| BauI | CACGAG | 2 cut(s) | 1251, 2962 |
| BbsI | GAAGAC | 3 cut(s) | 684, 1725, 2510 |
| Bbv12I | GWGCWC | 1 cut(s) | 2969 |
| BbvCI | CCTCAGC | 1 cut(s) | 2258 |
| BbvI | GCAGC | 8 cut(s) | 607, 679, 1521, 1584, 2056, 2114, 2419, 2473 |
| BccI | CCATC | 9 cut(s) | 340, 630, 634, 1007, 1568, 2135, 2397, 2969, 3302 |
| BceAI | ACGGC | 2 cut(s) | 298, 395 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 834, 868 |
| BciT130I | CCWGG | 2 cut(s) | 3087, 3198 |
| BciVI | GTATCC | 1 cut(s) | 2864 |
| BclI | TGATCA | 1 cut(s) | 2211 |
| BcnI | CCSGG | 2 cut(s) | 796, 860 |
| BcoDI | GTCTC | 3 cut(s) | 418, 1252, 2624 |
| BfaI | CTAG | 6 cut(s) | 524, 1481, 1697, 1763, 2393, 2501 |
| BfmI | CTRYAG | 1 cut(s) | 3014 |
| BfoI | RGCGCY | 1 cut(s) | 622 |
| BfuAI | ACCTGC | 2 cut(s) | 589, 1159 |
| BfuI | GTATCC | 1 cut(s) | 2864 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 842 |
| BlnI | CCTAGG | 1 cut(s) | 1480 |
| Bme1390I | CCNGG | 4 cut(s) | 796, 860, 3087, 3198 |
| Bme18I | GGWCC | 5 cut(s) | 866, 1217, 2590, 2708, 3034 |
| BmgBI | CACGTC | 1 cut(s) | 775 |
| BmgT120I | GGNCC | 7 cut(s) | 866, 1217, 1429, 1497, 2590, 2708, 3034 |
| BmiI | GGNNCC | 7 cut(s) | 1173, 1472, 1499, 1591, 2310, 2710, 2779 |
| BmrFI | CCNGG | 4 cut(s) | 796, 860, 3087, 3198 |
| BmrI | ACTGGG | 1 cut(s) | 1660 |
| BmsI | GCATC | 3 cut(s) | 1690, 2801, 3017 |
| BmuI | ACTGGG | 1 cut(s) | 1660 |
| BpiI | GAAGAC | 3 cut(s) | 684, 1725, 2510 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1163, 1195, 1232, 1264, 1574, 1606 |
| BpmI | CTGGAG | 2 cut(s) | 497, 932 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2258, 2769 |
| BpuEI | CTTGAG | 2 cut(s) | 1145, 1489 |
| BpuMI | CCSGG | 2 cut(s) | 796, 860 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2600 |
| BsaHI | GRCGYC | 1 cut(s) | 1730 |
| BsaJI | CCNNGG | 6 cut(s) | 101, 207, 877, 1480, 2860, 3085 |
| BsaWI | WCCGGW | 6 cut(s) | 625, 663, 2223, 2352, 2587, 2620 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 86, 116, 328, 358, 375, 405, 1879, 1909 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1426, 2095, 2319, 2717, 3308, 3309 |
| Bse118I | RCCGGY | 3 cut(s) | 663, 1219, 2587 |
| Bse1I | ACTGG | 4 cut(s) | 1655, 2505, 2564, 2710 |
| Bse21I | CCTNAGG | 1 cut(s) | 2154 |
| Bse3DI | GCAATG | 3 cut(s) | 1908, 2754, 3324 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2600 |
| BseAI | TCCGGA | 1 cut(s) | 625 |
| BseBI | CCWGG | 2 cut(s) | 3087, 3198 |
| BseDI | CCNNGG | 6 cut(s) | 101, 207, 877, 1480, 2860, 3085 |
| BseGI | GGATG | 7 cut(s) | 332, 622, 634, 931, 1018, 1333, 2617 |
| BseJI | GATNNNNATC | 1 cut(s) | 2600 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1426, 2095, 2319, 2717, 3308, 3309 |
| BseMI | GCAATG | 3 cut(s) | 1908, 2754, 3324 |
| BseNI | ACTGG | 4 cut(s) | 1655, 2505, 2564, 2710 |
| BsePI | GCGCGC | 1 cut(s) | 118 |
| BseSI | GKGCMC | 1 cut(s) | 2313 |
| BseXI | GCAGC | 8 cut(s) | 607, 679, 1521, 1584, 2056, 2114, 2419, 2473 |
| BseYI | CCCAGC | 1 cut(s) | 402 |
| BsgI | GTGCAG | 2 cut(s) | 32, 1460 |
| Bsh1236I | CGCG | 3 cut(s) | 120, 387, 1236 |
| BshFI | GGCC | 5 cut(s) | 31, 1430, 1498, 1532, 2145 |
| BshNI | GGYRCC | 1 cut(s) | 2308 |
| BshTI | ACCGGT | 2 cut(s) | 663, 2587 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2969 |
| BslFI | GGGAC | 3 cut(s) | 157, 734, 1854 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1426, 2095, 2319, 2717, 3308, 3309 |
| BsmAI | GTCTC | 3 cut(s) | 418, 1252, 2624 |
| BsmBI | CGTCTC | 1 cut(s) | 418 |
| BsmFI | GGGAC | 3 cut(s) | 157, 734, 1854 |
| BsmI | GAATGC | 2 cut(s) | 2244, 3150 |
| BsnI | GGCC | 5 cut(s) | 31, 1430, 1498, 1532, 2145 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2313, 2969 |
| Bsp13I | TCCGGA | 1 cut(s) | 625 |
| Bsp1407I | TGTACA | 1 cut(s) | 2918 |
| Bsp143I | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspANI | GGCC | 5 cut(s) | 31, 1430, 1498, 1532, 2145 |
| BspEI | TCCGGA | 1 cut(s) | 625 |
| BspFNI | CGCG | 3 cut(s) | 120, 387, 1236 |
| BspHI | TCATGA | 1 cut(s) | 1395 |
| BspLI | GGNNCC | 7 cut(s) | 1173, 1472, 1499, 1591, 2310, 2710, 2779 |
| BspMI | ACCTGC | 2 cut(s) | 589, 1159 |
| BspPI | GGATC | 6 cut(s) | 64, 732, 1465, 1478, 1585, 2124 |
| BspT107I | GGYRCC | 1 cut(s) | 2308 |
| BsrBI | CCGCTC | 1 cut(s) | 1029 |
| BsrDI | GCAATG | 3 cut(s) | 1908, 2754, 3324 |
| BsrFI | RCCGGY | 3 cut(s) | 663, 1219, 2587 |
| BsrGI | TGTACA | 1 cut(s) | 2918 |
| BsrI | ACTGG | 4 cut(s) | 1655, 2505, 2564, 2710 |
| BssAI | RCCGGY | 3 cut(s) | 663, 1219, 2587 |
| BssECI | CCNNGG | 6 cut(s) | 101, 207, 877, 1480, 2860, 3085 |
| BssHII | GCGCGC | 1 cut(s) | 118 |
| BssMI | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| BssNI | GRCGYC | 1 cut(s) | 1730 |
| BssSI | CACGAG | 2 cut(s) | 1251, 2962 |
| BssT1I | CCWWGG | 3 cut(s) | 207, 1480, 2860 |
| Bst2BI | CACGAG | 2 cut(s) | 1251, 2962 |
| Bst2UI | CCWGG | 2 cut(s) | 3087, 3198 |
| Bst4CI | ACNGT | 9 cut(s) | 102, 184, 364, 878, 1845, 2350, 2419, 2516, 2852 |
| Bst6I | CTCTTC | 4 cut(s) | 11, 20, 421, 1965 |
| BstACI | GRCGYC | 1 cut(s) | 1730 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 689, 3239 |
| BstAUI | TGTACA | 1 cut(s) | 2918 |
| BstC8I | GCNNGC | 4 cut(s) | 120, 408, 745, 3240 |
| BstDSI | CCRYGG | 3 cut(s) | 101, 207, 877 |
| BstEII | GGTNACC | 1 cut(s) | 1845 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2093 |
| BstF5I | GGATG | 7 cut(s) | 332, 622, 634, 931, 1018, 1333, 2617 |
| BstFNI | CGCG | 3 cut(s) | 120, 387, 1236 |
| BstH2I | RGCGCY | 1 cut(s) | 622 |
| BstHHI | GCGC | 5 cut(s) | 120, 122, 389, 621, 1540 |
| BstKTI | GATC | 8 cut(s) | 59, 727, 1333, 1473, 1580, 1675, 2119, 2214 |
| BstMAI | GTCTC | 3 cut(s) | 418, 1252, 2624 |
| BstMBI | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| BstNI | CCWGG | 2 cut(s) | 3087, 3198 |
| BstNSI | RCATGY | 3 cut(s) | 1247, 1405, 2813 |
| BstPI | GGTNACC | 1 cut(s) | 1845 |
| BstSCI | CCNGG | 4 cut(s) | 794, 858, 3085, 3196 |
| BstSFI | CTRYAG | 1 cut(s) | 3014 |
| BstSLI | GKGCMC | 1 cut(s) | 2313 |
| BstUI | CGCG | 3 cut(s) | 120, 387, 1236 |
| BstV1I | GCAGC | 8 cut(s) | 607, 679, 1521, 1584, 2056, 2114, 2419, 2473 |
| BstV2I | GAAGAC | 3 cut(s) | 684, 1725, 2510 |
| BstX2I | RGATCY | 3 cut(s) | 1470, 1577, 2116 |
| BstYI | RGATCY | 3 cut(s) | 1470, 1577, 2116 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2154 |
| BsuI | GTATCC | 1 cut(s) | 2864 |
| BsuRI | GGCC | 5 cut(s) | 31, 1430, 1498, 1532, 2145 |
| BtgI | CCRYGG | 3 cut(s) | 101, 207, 877 |
| BtgZI | GCGATG | 1 cut(s) | 291 |
| BtrI | CACGTC | 1 cut(s) | 775 |
| BtsCI | GGATG | 7 cut(s) | 332, 622, 634, 931, 1018, 1333, 2617 |
| BtsI | GCAGTG | 1 cut(s) | 1065 |
| BtsIMutI | CAGTG | 7 cut(s) | 1005, 1065, 1281, 1569, 1648, 2415, 2571 |
| BveI | ACCTGC | 2 cut(s) | 589, 1159 |
| Cac8I | GCNNGC | 4 cut(s) | 120, 408, 745, 3240 |
| CciI | TCATGA | 1 cut(s) | 1395 |
| CfoI | GCGC | 5 cut(s) | 120, 122, 389, 621, 1540 |
| Cfr10I | RCCGGY | 3 cut(s) | 663, 1219, 2587 |
| Cfr13I | GGNCC | 7 cut(s) | 866, 1217, 1429, 1497, 2590, 2708, 3034 |
| CseI | GACGC | 3 cut(s) | 689, 736, 1719 |
| Csp6I | GTAC | 6 cut(s) | 661, 2006, 2221, 2337, 2919, 3103 |
| CspAI | ACCGGT | 2 cut(s) | 663, 2587 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2041, 2076, 2701, 2736 |
| CviQI | GTAC | 6 cut(s) | 661, 2006, 2221, 2337, 2919, 3103 |
| DpnI | GATC | 8 cut(s) | 58, 726, 1332, 1472, 1579, 1674, 2118, 2213 |
| DpnII | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2044 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2044 |
| EaeI | YGGCCR | 2 cut(s) | 1530, 2143 |
| Eam1104I | CTCTTC | 4 cut(s) | 11, 20, 421, 1965 |
| EarI | CTCTTC | 4 cut(s) | 11, 20, 421, 1965 |
| EciI | GGCGGA | 2 cut(s) | 193, 935 |
| Eco130I | CCWWGG | 3 cut(s) | 207, 1480, 2860 |
| Eco47I | GGWCC | 5 cut(s) | 866, 1217, 2590, 2708, 3034 |
| Eco57I | CTGAAG | 4 cut(s) | 1305, 1526, 1806, 2184 |
| Eco81I | CCTNAGG | 1 cut(s) | 2154 |
| Eco91I | GGTNACC | 1 cut(s) | 1845 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2093 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1497 |
| EcoO65I | GGTNACC | 1 cut(s) | 1845 |
| EcoRI | GAATTC | 4 cut(s) | 1383, 2252, 3080, 3347 |
| EcoRII | CCWGG | 2 cut(s) | 3085, 3196 |
| EcoT14I | CCWWGG | 3 cut(s) | 207, 1480, 2860 |
| EcoT22I | ATGCAT | 1 cut(s) | 3032 |
| ErhI | CCWWGG | 3 cut(s) | 207, 1480, 2860 |
| Esp3I | CGTCTC | 1 cut(s) | 418 |
| FaqI | GGGAC | 3 cut(s) | 157, 734, 1854 |
| FauI | CCCGC | 5 cut(s) | 245, 385, 484, 538, 580 |
| FbaI | TGATCA | 1 cut(s) | 2211 |
| FokI | GGATG | 7 cut(s) | 319, 609, 641, 938, 1025, 1320, 2604 |
| FspBI | CTAG | 6 cut(s) | 524, 1481, 1697, 1763, 2393, 2501 |
| GlaI | GCGC | 5 cut(s) | 119, 121, 388, 620, 1539 |
| GsaI | CCCAGC | 1 cut(s) | 406 |
| GsuI | CTGGAG | 2 cut(s) | 497, 932 |
| HaeII | RGCGCY | 1 cut(s) | 622 |
| HaeIII | GGCC | 5 cut(s) | 31, 1430, 1498, 1532, 2145 |
| HgaI | GACGC | 3 cut(s) | 689, 736, 1719 |
| HhaI | GCGC | 5 cut(s) | 120, 122, 389, 621, 1540 |
| Hin1I | GRCGYC | 1 cut(s) | 1730 |
| Hin6I | GCGC | 5 cut(s) | 118, 120, 387, 619, 1538 |
| HinP1I | GCGC | 5 cut(s) | 118, 120, 387, 619, 1538 |
| HindIII | AAGCTT | 1 cut(s) | 518 |
| HphI | GGTGA | 9 cut(s) | 799, 826, 1088, 1140, 1331, 1652, 1839, 2335, 2351 |
| Hpy166II | GTNNAC | 6 cut(s) | 105, 582, 772, 985, 2006, 2052 |
| Hpy8I | GTNNAC | 6 cut(s) | 105, 582, 772, 985, 2006, 2052 |
| Hpy99I | CGWCG | 3 cut(s) | 542, 1075, 2050 |
| HpyAV | CCTTC | 7 cut(s) | 15, 47, 291, 379, 567, 895, 2167 |
| HpyCH4III | ACNGT | 9 cut(s) | 102, 184, 364, 878, 1845, 2350, 2419, 2516, 2852 |
| HpyCH4IV | ACGT | 4 cut(s) | 540, 774, 1080, 1861 |
| HpySE526I | ACGT | 4 cut(s) | 540, 774, 1080, 1861 |
| Hsp92I | GRCGYC | 1 cut(s) | 1730 |
| HspAI | GCGC | 5 cut(s) | 118, 120, 387, 619, 1538 |
| Kpn2I | TCCGGA | 1 cut(s) | 625 |
| Ksp22I | TGATCA | 1 cut(s) | 2211 |
| Kzo9I | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| LmnI | GCTCC | 7 cut(s) | 115, 253, 592, 1171, 1240, 1484, 1595 |
| Lsp1109I | GCAGC | 8 cut(s) | 607, 679, 1521, 1584, 2056, 2114, 2419, 2473 |
| LweI | GCATC | 3 cut(s) | 1690, 2801, 3017 |
| MaeI | CTAG | 6 cut(s) | 524, 1481, 1697, 1763, 2393, 2501 |
| MaeII | ACGT | 4 cut(s) | 540, 774, 1080, 1861 |
| MaeIII | GTNAC | 7 cut(s) | 653, 1076, 1146, 1200, 1845, 3043, 3172 |
| MalI | GATC | 8 cut(s) | 58, 726, 1332, 1472, 1579, 1674, 2118, 2213 |
| MbiI | CCGCTC | 1 cut(s) | 1029 |
| MboI | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| MfeI | CAATTG | 3 cut(s) | 1547, 2183, 2914 |
| MflI | RGATCY | 3 cut(s) | 1470, 1577, 2116 |
| MhlI | GDGCHC | 2 cut(s) | 2313, 2969 |
| MlsI | TGGCCA | 1 cut(s) | 2145 |
| MluNI | TGGCCA | 1 cut(s) | 2145 |
| MlyI | GAGTC | 4 cut(s) | 145, 901, 1516, 1592 |
| MmeI | TCCRAC | 4 cut(s) | 561, 588, 2041, 2229 |
| Mox20I | TGGCCA | 1 cut(s) | 2145 |
| Mph1103I | ATGCAT | 1 cut(s) | 3032 |
| MroI | TCCGGA | 1 cut(s) | 625 |
| MscI | TGGCCA | 1 cut(s) | 2145 |
| MseI | TTAA | 6 cut(s) | 840, 1325, 1965, 2331, 3002, 3225 |
| MslI | CAYNNNNRTG | 4 cut(s) | 71, 627, 1400, 2834 |
| Msp20I | TGGCCA | 1 cut(s) | 2145 |
| MspA1I | CMGCKG | 2 cut(s) | 1272, 2105 |
| MspR9I | CCNGG | 4 cut(s) | 796, 860, 3087, 3198 |
| MunI | CAATTG | 3 cut(s) | 1547, 2183, 2914 |
| Mva1269I | GAATGC | 2 cut(s) | 2244, 3150 |
| MvaI | CCWGG | 2 cut(s) | 3087, 3198 |
| MvnI | CGCG | 3 cut(s) | 120, 387, 1236 |
| NciI | CCSGG | 2 cut(s) | 796, 860 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NdeII | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| NlaIV | GGNNCC | 7 cut(s) | 1173, 1472, 1499, 1591, 2310, 2710, 2779 |
| NmeAIII | GCCGAG | 2 cut(s) | 1508, 2500 |
| NmuCI | GTSAC | 5 cut(s) | 1076, 1146, 1845, 3043, 3172 |
| NsiI | ATGCAT | 1 cut(s) | 3032 |
| NspI | RCATGY | 3 cut(s) | 1247, 1405, 2813 |
| PagI | TCATGA | 1 cut(s) | 1395 |
| PaqCI | CACCTGC | 2 cut(s) | 589, 1159 |
| PauI | GCGCGC | 1 cut(s) | 118 |
| PctI | GAATGC | 2 cut(s) | 2244, 3150 |
| PfeI | GAWTC | 7 cut(s) | 191, 1392, 1609, 1721, 1775, 1875, 2204 |
| PflFI | GACNNNGTC | 1 cut(s) | 1082 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1426 |
| PinAI | ACCGGT | 2 cut(s) | 663, 2587 |
| PleI | GAGTC | 4 cut(s) | 145, 901, 1516, 1591 |
| PpsI | GAGTC | 4 cut(s) | 145, 901, 1516, 1591 |
| PshBI | ATTAAT | 1 cut(s) | 2331 |
| Psp6I | CCWGG | 2 cut(s) | 3085, 3196 |
| PspEI | GGTNACC | 1 cut(s) | 1845 |
| PspFI | CCCAGC | 1 cut(s) | 402 |
| PspGI | CCWGG | 2 cut(s) | 3085, 3196 |
| PspN4I | GGNNCC | 7 cut(s) | 1173, 1472, 1499, 1591, 2310, 2710, 2779 |
| PspPI | GGNCC | 7 cut(s) | 866, 1217, 1429, 1497, 2590, 2708, 3034 |
| PsuI | RGATCY | 3 cut(s) | 1470, 1577, 2116 |
| PsyI | GACNNNGTC | 1 cut(s) | 1082 |
| PteI | GCGCGC | 1 cut(s) | 118 |
| PvuII | CAGCTG | 1 cut(s) | 2105 |
| RsaI | GTAC | 6 cut(s) | 662, 2007, 2222, 2338, 2920, 3104 |
| RsaNI | GTAC | 6 cut(s) | 661, 2006, 2221, 2337, 2919, 3103 |
| RseI | CAYNNNNRTG | 4 cut(s) | 71, 627, 1400, 2834 |
| SaqAI | TTAA | 6 cut(s) | 840, 1325, 1965, 2331, 3002, 3225 |
| Sau3AI | GATC | 8 cut(s) | 56, 724, 1330, 1470, 1577, 1672, 2116, 2211 |
| Sau96I | GGNCC | 7 cut(s) | 866, 1217, 1429, 1497, 2590, 2708, 3034 |
| SchI | GAGTC | 4 cut(s) | 145, 901, 1516, 1592 |
| ScrFI | CCNGG | 4 cut(s) | 796, 860, 3087, 3198 |
| SduI | GDGCHC | 2 cut(s) | 2313, 2969 |
| SfaNI | GCATC | 3 cut(s) | 1690, 2801, 3017 |
| SfcI | CTRYAG | 1 cut(s) | 3014 |
| SinI | GGWCC | 5 cut(s) | 866, 1217, 2590, 2708, 3034 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 71, 627, 1400, 2834 |
| SmlI | CTYRAG | 2 cut(s) | 1124, 1504 |
| SmoI | CTYRAG | 2 cut(s) | 1124, 1504 |
| SspI | AATATT | 2 cut(s) | 1753, 2468 |
| SspMI | CTAG | 6 cut(s) | 524, 1481, 1697, 1763, 2393, 2501 |
| StyD4I | CCNGG | 4 cut(s) | 794, 858, 3085, 3196 |
| StyI | CCWWGG | 3 cut(s) | 207, 1480, 2860 |
| TaaI | ACNGT | 9 cut(s) | 102, 184, 364, 878, 1845, 2350, 2419, 2516, 2852 |
| TaiI | ACGT | 4 cut(s) | 543, 777, 1083, 1864 |
| TaqI | TCGA | 5 cut(s) | 854, 1070, 1675, 2833, 3143 |
| TaqII | GACCGA | 1 cut(s) | 839 |
| TatI | WGTACW | 1 cut(s) | 2918 |
| TauI | GCSGC | 4 cut(s) | 313, 482, 836, 920 |
| TfiI | GAWTC | 7 cut(s) | 191, 1392, 1609, 1721, 1775, 1875, 2204 |
| Tru1I | TTAA | 6 cut(s) | 840, 1325, 1965, 2331, 3002, 3225 |
| Tru9I | TTAA | 6 cut(s) | 840, 1325, 1965, 2331, 3002, 3225 |
| TscAI | CASTG | 7 cut(s) | 1005, 1065, 1288, 1576, 1655, 2422, 2571 |
| TseFI | GTSAC | 5 cut(s) | 1076, 1146, 1845, 3043, 3172 |
| TseI | GCWGC | 8 cut(s) | 595, 692, 1509, 1597, 2069, 2102, 2432, 2486 |
| Tsp45I | GTSAC | 5 cut(s) | 1076, 1146, 1845, 3043, 3172 |
| TspDTI | ATGAA | 8 cut(s) | 1317, 1412, 1430, 1622, 1871, 1897, 2510, 2598 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| TspRI | CASTG | 7 cut(s) | 1005, 1065, 1288, 1576, 1655, 2422, 2571 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1082 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1426 |
| VpaK11BI | GGWCC | 5 cut(s) | 866, 1217, 2590, 2708, 3034 |
| VspI | ATTAAT | 1 cut(s) | 2331 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2093 |
| XapI | RAATTY | 6 cut(s) | 506, 1383, 1789, 2252, 3080, 3347 |
| XbaI | TCTAGA | 2 cut(s) | 523, 1696 |
| XceI | RCATGY | 3 cut(s) | 1247, 1405, 2813 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 39 |
| XmaJI | CCTAGG | 1 cut(s) | 1480 |
| XspI | CTAG | 6 cut(s) | 524, 1481, 1697, 1763, 2393, 2501 |
| Zsp2I | ATGCAT | 1 cut(s) | 3032 |