pycom02g01140

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008708
Physical Location & Seq
Reverse (-)
635115 .. 636681
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGAAATTTCATTGCTTTTGGTGTTTACAGGTGAAAGAAAAACCGGAAGAAATGCCGCTGTACGATTGTATGCTGCTGCTGAAGCCCCATGTGAGGAAGGAGTCTCTGATGGACTTGGTTGCTCGAGTAAGCAAACACGTTTGCAGAAGAAATGGAGTTATTACTGACATGAAGTCGTTCGGCACTGTTCAGCTAGGTTATGGTATTAAGAAGCTTGATGGAAGGTACTATCAGGGCCAACTAATGCAAATGACAATGATGACTACACCCAACATCAACAAGGAGCTGCACTACTTGAACAAGGAAGATCGATTGCTGCGCTGGCTGTTGGTTAAACACCGAGAAACAAAGTATGGACAGGAATTTCTAAGTGAAGAGGATTCGAAAAGTGAATTCAGTAAGCTTCAGCGGAGCAGCATATATAATATGGAGGAGTCTGAGACTGAGGATGATGACGACGATGACGAGGAATATGATGTGGAACAAGAAGGAAAACGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

168

Amino Acids

19.98

Weight (kDa)

5.46

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 21 - 112 2.1e-15 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 409
AcsI RAATTY 3 cut(s) 5, 362, 392
AcuI CTGAAG 2 cut(s) 101, 389
AfaI GTAC 3 cut(s) 62, 227, 499
AfiI CCNNNNNNNGG 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 1 cut(s) 298
AhdI GACNNNNNGTC 1 cut(s) 172
AluBI AGCT 4 cut(s) 193, 214, 286, 403
AluI AGCT 4 cut(s) 193, 214, 286, 403
Alw26I GTCTC 2 cut(s) 108, 434
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 5 cut(s) 73, 76, 286, 316, 414
ApoI RAATTY 3 cut(s) 5, 362, 392
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 123
BbvI GCAGC 5 cut(s) 60, 63, 273, 303, 426
BccI CCATC 2 cut(s) 103, 212
BcoDI GTCTC 2 cut(s) 108, 434
BfaI CTAG 1 cut(s) 194
BisI GCNGC 6 cut(s) 56, 74, 77, 287, 317, 415
BlsI GCNGC 6 cut(s) 57, 75, 78, 288, 318, 416
BmeRI GACNNNNNGTC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 235
Bpu14I TTCGAA 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 10
BseCI ATCGAT 1 cut(s) 310
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 10
BseMII CTCAG 2 cut(s) 429, 435
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 5 cut(s) 60, 63, 273, 303, 426
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 2 cut(s) 108, 434
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 383
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 2 cut(s) 56, 409
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 2 cut(s) 430, 436
BspDI ATCGAT 1 cut(s) 310
BspT104I TTCGAA 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 10
BssMI GATC 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 369
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 3 cut(s) 368, 438, 444
BstF5I GGATG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 108, 434
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 82, 322
BstV1I GCAGC 5 cut(s) 60, 63, 273, 303, 426
Bsu15I ATCGAT 1 cut(s) 310
BsuRI GGCC 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 310
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 323
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 310
Csp6I GTAC 3 cut(s) 61, 226, 498
CviAII CATG 2 cut(s) 89, 169
CviJI RGCY 7 cut(s) 85, 193, 214, 237, 286, 325, 403
CviKI_1 RGCY 7 cut(s) 85, 193, 214, 237, 286, 325, 403
CviQI GTAC 3 cut(s) 61, 226, 498
DdeI CTNAG 3 cut(s) 368, 438, 444
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 101, 389
Eco88I CYCGRG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 392
FaeI CATG 2 cut(s) 92, 172
FatI CATG 2 cut(s) 88, 168
Fnu4HI GCNGC 6 cut(s) 56, 74, 77, 287, 317, 415
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 6 cut(s) 56, 74, 77, 287, 317, 415
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 320
GluI GCNGC 6 cut(s) 56, 74, 77, 287, 317, 415
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 92, 172
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 212, 401
HinfI GANTC 3 cut(s) 101, 380, 434
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 108, 439
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 3 cut(s) 91, 216, 482
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 138, 496
HpyCH4V TGCA 3 cut(s) 144, 247, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 322
HpyF3I CTNAG 3 cut(s) 368, 438, 444
HpySE526I ACGT 2 cut(s) 138, 496
Hsp92II CATG 2 cut(s) 92, 172
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 283, 411
LpnPI CCDG 5 cut(s) 14, 57, 218, 307, 344
Lsp1109I GCAGC 5 cut(s) 60, 63, 273, 303, 426
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 138, 496
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 4 cut(s) 59, 159, 317, 386
MluCI AATT 3 cut(s) 5, 362, 392
MlyI GAGTC 2 cut(s) 110, 443
MnlI CCTC 5 cut(s) 87, 370, 424, 439, 460
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 2 cut(s) 207, 333
MspA1I CMGCKG 2 cut(s) 58, 409
MspI CCGG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 82, 322
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 92, 172
NspV TTCGAA 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 6 cut(s) 57, 75, 78, 288, 318, 416
PleI GAGTC 2 cut(s) 109, 442
PpsI GAGTC 2 cut(s) 109, 442
PspPI GGNCC 1 cut(s) 235
PspXI VCTCGAGB 1 cut(s) 123
RsaI GTAC 3 cut(s) 62, 227, 499
RsaNI GTAC 3 cut(s) 61, 226, 498
SaqAI TTAA 2 cut(s) 207, 333
SatI GCNGC 6 cut(s) 56, 74, 77, 287, 317, 415
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 110, 443
Sfr274I CTCGAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 5, 362, 392
SsiI CCGC 2 cut(s) 56, 409
SspMI CTAG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 2 cut(s) 141, 499
TaqI TCGA 3 cut(s) 124, 310, 383
TasI AATT 3 cut(s) 5, 362, 392
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 207, 333
Tru9I TTAA 2 cut(s) 207, 333
TscAI CASTG 1 cut(s) 190
TseI GCWGC 5 cut(s) 73, 76, 286, 316, 414
TspDTI ATGAA 2 cut(s) 17, 185
TspRI CASTG 1 cut(s) 190
XapI RAATTY 3 cut(s) 5, 362, 392
XhoI CTCGAG 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.