Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009958

Physical Location & Seq

Genomic Coordinates Reverse (-)

3427500 .. 3429876

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTTGGATTTAGACAAGAAATATACCCGTAATGCAGCATATGACACTACATGCTTCTTTCACATTCATTATATAATGCCTGGTTTACAGTCAAAACATACTTTTTCAGTGATTCTGCTTTGTTTTGGTTTTACAATGTTCGGAGAGGCAAGAGTTAGGCGCTTGGGGATGATCGCAAAAACAATTTGCAGAAGAAAATGCAGAGAAGAAGTAGGAGAAGAAGAAGAAATGGAGGCAGTTGATGATCCAAGGTGGGATCGTATTCAAAACAAGTTCAGGGGAATGGAAAATGTAAAACCTGGACGTGAGAGACCTGAGTTTCGAAGGTGGAATAGGCAGGAAGATTGGGGTAAGAAGACATGGAAAGAGGCTACTGAATCGTCCGTGCCTAGGATGATTGGCCGAAGTGTTTATGGTGTTGGTCCAGTTTTGGCTTCTTTGTCAGCTGGAAGAAGAGAATTTTATGCATTGTATATTCAAGAAGGGATGGATTTGAGCAAAAATAATAGGAAGAAGAAGGACAAGGGCTTTGAGAGAATTTTAATGATGGCTGACAAGATTGGGTTAAACGTAAAGGATGGTCTGGTTCTAGATGCCTCTCCGTTGGAGATGGTGAAAATTAACGAATTAGAACCTGTTTCAGTTGAGGAAGATAAGAGTTCTCTCTGGATTGCTTTGGATGAGGTTACAGATCCTCAGAATGTGGGGTCAATCATCAGGTCGTCTTACTTCTTTGGAGCTTCTGGGGTGGTATTATGTGCCAAGAATTCAGCCCCACTGAGTGGCGTTGTGAGCAAAGCAAGTGCAGGCTCACTTGAGTTGATGGAGTTGAGATACTGCAAGAATATGATGCAGTTCCTAACATCCTCGGCTCTACCCTTGAAAGAGGTTGCACCTAGTGTGCCAACAATTCTTGTTCTGGGAAGTGAGGGTACTGGGTTGAGACCTTTGGTGGAAAGATCTTTTGATGATACTGAAACCGTGGAAGAGAATCATGCATGCTCAGCTGAAGAGTTCCGATCATTTTTGGCCGTGGAGAGCTTAAATGTCAGTGTTGCAGCTGGTGTGCTGCTTCATCGCTTAACAGGAAACAATAACGATGAGAATGTCCATGTAGTTAATCAACAGACTGACGAACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070039 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase SpoU_sub_bind

Protein Analysis

382

Amino Acids

42.91

Weight (kDa)

5.74

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	222 - 359	6.3e-18	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19870
fragaria_vesca	FvH4_1g06150 FvH4_1g06190
malus_domestica	MD02G1065700.v1.1 MD15G1196600.v1.1
prunus_persica	Prupe.7G219800_v2.0.a1 Prupe.7G219800_v2.0.a1
pyrus_communis	pycom02g05180 pycom02g05220 pycom15g17570
rosa_chinensis	RchiOBHm_Chr2g0091911
rosa_laevigata	RLG00000016260
rosa_multiflora	Rmu_sc0031557.1_g000002 Rmu_sc0031558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149620
rosa_rugosa	Rorug02G0021600
rosa_samantha	Rh2AG067200 Rh2BG066400 Rh2CG067700 Rh2DG066300
rosa_wichuraiana	Rw2G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	782
AclWI	GGATC	3 cut(s)	239, 264, 686
AcoI	YGGCCR	2 cut(s)	400, 1029
AcsI	RAATTY	3 cut(s)	458, 537, 766
AcuI	CTGAAG	1 cut(s)	1029
AdeI	CACNNNGTG	2 cut(s)	782, 899
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	2 cut(s)	390, 782
AgsI	TTSAA	3 cut(s)	266, 479, 883
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	79, 298
AluBI	AGCT	5 cut(s)	446, 740, 1007, 1041, 1061
AluI	AGCT	5 cut(s)	446, 740, 1007, 1041, 1061
Alw26I	GTCTC	2 cut(s)	304, 937
AlwI	GGATC	3 cut(s)	239, 264, 686
AoxI	GGCC	2 cut(s)	400, 1029
ApeKI	GCWGC	3 cut(s)	35, 1058, 1069
ApoI	RAATTY	3 cut(s)	458, 537, 766
ArsI	GACNNNNNNTTYG	4 cut(s)	303, 335, 512, 544
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	625
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	422
AvrII	CCTAGG	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	916, 948
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	47, 1056, 1070
BccI	CCATC	5 cut(s)	481, 541, 572, 604, 817
BceAI	ACGGC	1 cut(s)	1016
BciT130I	CCWGG	2 cut(s)	81, 300
BcoDI	GTCTC	2 cut(s)	304, 937
BfaI	CTAG	3 cut(s)	390, 590, 897
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	959
BisI	GCNGC	3 cut(s)	36, 1059, 1070
BlnI	CCTAGG	1 cut(s)	389
BlpI	GCTNAGC	1 cut(s)	1003
BlsI	GCNGC	3 cut(s)	37, 1060, 1071
Bme1390I	CCNGG	2 cut(s)	81, 300
Bme18I	GGWCC	1 cut(s)	422
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	422
BmrFI	CCNGG	2 cut(s)	81, 300
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	2 cut(s)	583, 840
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	1003
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	836
BsaI	GGTCTC	2 cut(s)	304, 937
BsaJI	CCNNGG	5 cut(s)	248, 389, 867, 981, 1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 782
Bse1I	ACTGG	2 cut(s)	425, 940
BseBI	CCWGG	2 cut(s)	81, 300
BseDI	CCNNGG	5 cut(s)	248, 389, 867, 981, 1032
BseGI	GGATG	6 cut(s)	174, 399, 492, 583, 685, 863
BseLI	CCNNNNNNNGG	2 cut(s)	390, 782
BseMII	CTCAG	4 cut(s)	306, 710, 770, 1017
BseNI	ACTGG	2 cut(s)	425, 940
BseXI	GCAGC	3 cut(s)	47, 1056, 1070
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	2 cut(s)	402, 1031
BslI	CCNNNNNNNGG	2 cut(s)	390, 782
BsmAI	GTCTC	2 cut(s)	304, 937
BsnI	GGCC	2 cut(s)	402, 1031
Bso31I	GGTCTC	2 cut(s)	304, 937
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
Bsp1720I	GCTNAGC	1 cut(s)	1003
BspANI	GGCC	2 cut(s)	402, 1031
BspCNI	CTCAG	4 cut(s)	307, 709, 771, 1016
BspPI	GGATC	3 cut(s)	239, 264, 686
BspT104I	TTCGAA	1 cut(s)	322
BspTNI	GGTCTC	2 cut(s)	304, 937
BsrI	ACTGG	2 cut(s)	425, 940
BssECI	CCNNGG	5 cut(s)	248, 389, 867, 981, 1032
BssMI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
BssT1I	CCWWGG	2 cut(s)	248, 389
Bst2UI	CCWGG	2 cut(s)	81, 300
Bst4CI	ACNGT	2 cut(s)	90, 982
Bst6I	CTCTTC	3 cut(s)	448, 981, 1005
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	808, 1000
BstDEI	CTNAG	4 cut(s)	315, 696, 779, 1003
BstDSI	CCRYGG	2 cut(s)	981, 1032
BstF5I	GGATG	6 cut(s)	174, 399, 492, 583, 685, 863
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	6 cut(s)	174, 247, 259, 694, 962, 1022
BstMAI	GTCTC	2 cut(s)	304, 937
BstMBI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
BstMWI	GCNNNNNNNGC	2 cut(s)	792, 1004
BstNI	CCWGG	2 cut(s)	81, 300
BstNSI	RCATGY	2 cut(s)	54, 1002
BstSCI	CCNGG	2 cut(s)	79, 298
BstV1I	GCAGC	3 cut(s)	47, 1056, 1070
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	691, 959
BstYI	RGATCY	2 cut(s)	691, 959
BsuRI	GGCC	2 cut(s)	402, 1031
BtgI	CCRYGG	2 cut(s)	981, 1032
BtgZI	GCGATG	1 cut(s)	1061
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	6 cut(s)	174, 399, 492, 583, 685, 863
BtsIMutI	CAGTG	3 cut(s)	114, 776, 1057
Cac8I	GCNNGC	2 cut(s)	808, 1000
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	933
CviAII	CATG	5 cut(s)	51, 360, 995, 999, 1112
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	4 cut(s)	315, 696, 779, 1003
DpnI	GATC	6 cut(s)	173, 246, 258, 693, 961, 1021
DpnII	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
DraIII	CACNNNGTG	2 cut(s)	782, 899
EaeI	YGGCCR	2 cut(s)	400, 1029
Eam1104I	CTCTTC	3 cut(s)	448, 981, 1005
EarI	CTCTTC	3 cut(s)	448, 981, 1005
Eco130I	CCWWGG	2 cut(s)	248, 389
Eco31I	GGTCTC	2 cut(s)	304, 937
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	1029
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	2 cut(s)	79, 298
EcoT14I	CCWWGG	2 cut(s)	248, 389
EcoT22I	ATGCAT	2 cut(s)	469, 1000
ErhI	CCWWGG	2 cut(s)	248, 389
FaeI	CATG	5 cut(s)	54, 363, 998, 1002, 1115
FatI	CATG	5 cut(s)	50, 359, 994, 998, 1111
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	36, 1059, 1070
FokI	GGATG	6 cut(s)	181, 406, 499, 590, 692, 850
Fsp4HI	GCNGC	3 cut(s)	36, 1059, 1070
FspBI	CTAG	3 cut(s)	390, 590, 897
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	3 cut(s)	36, 1059, 1070
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	402, 1031
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	5 cut(s)	54, 363, 998, 1002, 1115
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	112, 377, 991
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	3 cut(s)	143, 699, 1019
Hpy188III	TCNNGA	3 cut(s)	479, 590, 667
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	318, 476, 511
HpyCH4III	ACNGT	2 cut(s)	90, 982
HpyCH4IV	ACGT	2 cut(s)	304, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	792, 1004
HpyF3I	CTNAG	4 cut(s)	315, 696, 779, 1003
HpySE526I	ACGT	2 cut(s)	304, 570
Hsp92II	CATG	5 cut(s)	54, 363, 998, 1002, 1115
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	3 cut(s)	47, 1056, 1070
LweI	GCATC	2 cut(s)	583, 840
MaeI	CTAG	3 cut(s)	390, 590, 897
MaeII	ACGT	2 cut(s)	304, 570
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	6 cut(s)	173, 246, 258, 693, 961, 1021
MboI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
MflI	RGATCY	2 cut(s)	691, 959
MluCI	AATT	7 cut(s)	183, 458, 537, 618, 626, 766, 909
MmeI	TCCRAC	1 cut(s)	585
Mph1103I	ATGCAT	2 cut(s)	469, 1000
MseI	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
MspA1I	CMGCKG	3 cut(s)	446, 1007, 1061
MspR9I	CCNGG	2 cut(s)	81, 300
MvaI	CCWGG	2 cut(s)	81, 300
MwoI	GCNNNNNNNGC	2 cut(s)	792, 1004
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
NlaIII	CATG	5 cut(s)	54, 363, 998, 1002, 1115
NmeAIII	GCCGAG	1 cut(s)	848
NsiI	ATGCAT	2 cut(s)	469, 1000
NspI	RCATGY	2 cut(s)	54, 1002
NspV	TTCGAA	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	1002
PfeI	GAWTC	3 cut(s)	112, 377, 991
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	3 cut(s)	37, 1060, 1071
Psp6I	CCWGG	2 cut(s)	79, 298
PspGI	CCWGG	2 cut(s)	79, 298
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	691, 959
PvuII	CAGCTG	3 cut(s)	446, 1007, 1061
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
SaqAI	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
SatI	GCNGC	3 cut(s)	36, 1059, 1070
Sau3AI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
Sau96I	GGNCC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	81, 300
SfaNI	GCATC	2 cut(s)	583, 840
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SphI	GCATGC	1 cut(s)	1002
Sse9I	AATT	7 cut(s)	183, 458, 537, 618, 626, 766, 909
SspMI	CTAG	3 cut(s)	390, 590, 897
StyD4I	CCNGG	2 cut(s)	79, 298
StyI	CCWWGG	2 cut(s)	248, 389
TaaI	ACNGT	2 cut(s)	90, 982
TaiI	ACGT	2 cut(s)	307, 573
TaqI	TCGA	1 cut(s)	322
TasI	AATT	7 cut(s)	183, 458, 537, 618, 626, 766, 909
TfiI	GAWTC	3 cut(s)	112, 377, 991
Tru1I	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
Tru9I	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
TscAI	CASTG	3 cut(s)	114, 783, 1057
TseI	GCWGC	3 cut(s)	35, 1058, 1069
TspDTI	ATGAA	2 cut(s)	56, 1064
TspGWI	ACGGA	2 cut(s)	373, 591
TspRI	CASTG	3 cut(s)	114, 783, 1057
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	3 cut(s)	458, 537, 766
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	2 cut(s)	54, 1002
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	3 cut(s)	390, 590, 897
Zsp2I	ATGCAT	2 cut(s)	469, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.