pycom02g05410

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012044
Physical Location & Seq
Forward (+)
3614159 .. 3616836
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 774 bp
ATGGCATCAGTCCACCACCGCCTCCTCCTCCTCATCACCCTCCTCGCAATTCCCGCCTCCTTATCATCCCAATCCGTCATCCAGATGCCGAGGAAACGACACCGCTTTGCCGCCTCCGACGACAGCCTCTACTGCGACAGCTGGAGATTCTCCATCGAGACCAACGACGCCGGAACCTGGTCCAACATTCCGTCCAGGTGCGTCCGATTCGTCCAGGACTACATGACCGGCGACCGGTACCCGTCCGACTTGGCGTCCGTCGCGGATTACTCGCTGAGCTTCGCGAAGGGGGTGACGATGGGCGGCGATGGGAAGGACGCGTGGGTGTTCGACATCGACGAGACTCTGCTTTCCAATTTGGCCTACTATCAGGCCCATGGATTCGGATCGGAGACGTTCAATGAAGCATTTTTCGATGAGTGGGTGGATTTGGCTGAGGCACCTGCTCTCCCAGCAAGTTTAAATCTATACAAAGAGCTTGAGCAGTTGGGTTTCAAGATGTTTCTGTTAACTGGGCGGAGCGAACATCAGAGAAACGCCACCGCGAGAAACCTTCTATATGCAGGTTACAACAATTGGGAGAGGCTGCTACTGAGAGGACCTTCTGATCAAGGAACACCGGCCACGGTCTACAAATCCCAGAAGAGATCGGACTTGATAAATGAAGGTTATCGAATTCACGGGAGCTCAGGAGATCAATGGAGTGATCTGATAGGTTTTGCTATTGCTCAACGATCGTTTAAACTTCCAAACCCAATGTATTACATTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

258

Amino Acids

28.98

Weight (kDa)

5.68

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 38 - 256 8e-78 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29260 AT4G29270
fragaria_vesca FvH4_1g06500
malus_domestica MD02G1068300.v1.1
prunus_persica Prupe.7G217300_v2.0.a1
pyrus_communis pycom02g05410 pycom08g17150 pycom15g17740
rosa_chinensis RchiOBHm_Chr2g0092251
rosa_laevigata RLG00000016290
rosa_multiflora Rmu_sc0000524.1_g000032 Rmu_sc0030540.1_g000001
rosa_roxburghii Rroxscaffold_2G00149330
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG069900 Rh2BG069400 Rh2CG070600 Rh2DG068400
rosa_wichuraiana Rw2G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
Acc36I ACCTGC 2 cut(s) 451, 554
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 2 cut(s) 237, 439
AccI GTMKAC 1 cut(s) 630
AccII CGCG 4 cut(s) 263, 284, 320, 545
AciI CCGC 8 cut(s) 19, 54, 103, 111, 263, 303, 517, 543
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 1 cut(s) 675
AcyI GRCGYC 2 cut(s) 168, 254
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 177, 234
AflIII ACRYGT 1 cut(s) 318
AgeI ACCGGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 400, 496
AhdI GACNNNNNGTC 1 cut(s) 253
AjnI CCWGG 3 cut(s) 176, 194, 213
AluBI AGCT 4 cut(s) 141, 279, 478, 687
AluI AGCT 4 cut(s) 141, 279, 478, 687
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 3 cut(s) 152, 335, 386
AlwI GGATC 1 cut(s) 394
AoxI GGCC 3 cut(s) 360, 372, 621
ApeKI GCWGC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 675
AsiGI ACCGGT 1 cut(s) 234
Asp718I GGTACC 1 cut(s) 237
AspS9I GGNCC 3 cut(s) 180, 373, 599
AsuHPI GGTGA 2 cut(s) 28, 304
AvaII GGWCC 2 cut(s) 180, 599
BanI GGYRCC 2 cut(s) 237, 439
BanII GRGCYC 1 cut(s) 689
Bbv12I GWGCWC 1 cut(s) 689
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 573
BccI CCATC 3 cut(s) 161, 292, 302
BciT130I CCWGG 3 cut(s) 178, 196, 215
BclI TGATCA 1 cut(s) 607
BcoDI GTCTC 3 cut(s) 152, 335, 386
BfaI CTAG 1 cut(s) 772
BfuAI ACCTGC 2 cut(s) 451, 554
BisI GCNGC 3 cut(s) 111, 304, 587
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 3 cut(s) 112, 305, 588
Bme1390I CCNGG 3 cut(s) 178, 196, 215
Bme18I GGWCC 2 cut(s) 180, 599
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 180, 373, 599
BmiI GGNNCC 3 cut(s) 175, 239, 441
BmrFI CCNGG 3 cut(s) 178, 196, 215
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 14, 75
BmuI ACTGGG 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 163
Bpu10I CCTNAGC 2 cut(s) 435, 688
Bpu1102I GCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 385
BsaHI GRCGYC 2 cut(s) 168, 254
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 89, 376, 624
BsaWI WCCGGW 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 234
Bse118I RCCGGY 3 cut(s) 227, 234, 619
Bse1I ACTGG 1 cut(s) 517
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 1 cut(s) 385
BseBI CCWGG 3 cut(s) 178, 196, 215
BseDI CCNNGG 3 cut(s) 89, 376, 624
BseGI GGATG 2 cut(s) 65, 78
BseJI GATNNNNATC 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 177, 234
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 4 cut(s) 266, 426, 584, 702
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 4 cut(s) 14, 17, 20, 32
BseXI GCAGC 1 cut(s) 573
BseYI CCCAGC 1 cut(s) 451
Bsh1236I CGCG 4 cut(s) 263, 284, 320, 545
Bsh1285I CGRYCG 2 cut(s) 235, 737
BshFI GGCC 3 cut(s) 362, 374, 623
BshNI GGYRCC 2 cut(s) 237, 439
BshTI ACCGGT 1 cut(s) 234
BsiEI CGRYCG 2 cut(s) 235, 737
BsiHKAI GWGCWC 1 cut(s) 689
BsiSI CCGG 4 cut(s) 171, 228, 235, 620
BslI CCNNNNNNNGG 2 cut(s) 177, 234
BsmAI GTCTC 3 cut(s) 152, 335, 386
BsmBI CGTCTC 1 cut(s) 386
BsnI GGCC 3 cut(s) 362, 374, 623
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 689
Bsp143I GATC 6 cut(s) 386, 607, 647, 694, 706, 734
Bsp1720I GCTNAGC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 376
Bsp68I TCGCGA 1 cut(s) 284
BspACI CCGC 8 cut(s) 19, 54, 103, 111, 263, 303, 517, 543
BspANI GGCC 3 cut(s) 362, 374, 623
BspCNI CTCAG 4 cut(s) 267, 427, 585, 701
BspFNI CGCG 4 cut(s) 263, 284, 320, 545
BspLI GGNNCC 3 cut(s) 175, 239, 441
BspMI ACCTGC 2 cut(s) 451, 554
BspPI GGATC 1 cut(s) 394
BspT107I GGYRCC 2 cut(s) 237, 439
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 765
BsrFI RCCGGY 3 cut(s) 227, 234, 619
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 3 cut(s) 227, 234, 619
BssECI CCNNGG 3 cut(s) 89, 376, 624
BssMI GATC 6 cut(s) 386, 607, 647, 694, 706, 734
BssNI GRCGYC 2 cut(s) 168, 254
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 3 cut(s) 178, 196, 215
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 638
BstACI GRCGYC 2 cut(s) 168, 254
BstDEI CTNAG 4 cut(s) 275, 435, 593, 688
BstDSI CCRYGG 2 cut(s) 376, 624
BstF5I GGATG 2 cut(s) 65, 78
BstFNI CGCG 4 cut(s) 263, 284, 320, 545
BstKTI GATC 6 cut(s) 389, 610, 650, 697, 709, 737
BstMAI GTCTC 3 cut(s) 152, 335, 386
BstMBI GATC 6 cut(s) 386, 607, 647, 694, 706, 734
BstMCI CGRYCG 2 cut(s) 235, 737
BstMWI GCNNNNNNNGC 4 cut(s) 53, 132, 260, 452
BstNI CCWGG 3 cut(s) 178, 196, 215
BstSCI CCNGG 3 cut(s) 176, 194, 213
BstUI CGCG 4 cut(s) 263, 284, 320, 545
BstV1I GCAGC 1 cut(s) 573
BsuRI GGCC 3 cut(s) 362, 374, 623
BtgI CCRYGG 2 cut(s) 376, 624
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 65, 78
BtuMI TCGCGA 1 cut(s) 284
BveI ACCTGC 2 cut(s) 451, 554
Cfr10I RCCGGY 3 cut(s) 227, 234, 619
Cfr13I GGNCC 3 cut(s) 180, 373, 599
CseI GACGC 4 cut(s) 176, 190, 243, 326
CsiI ACCWGGT 1 cut(s) 176
Csp6I GTAC 1 cut(s) 238
CspAI ACCGGT 1 cut(s) 234
CviAII CATG 2 cut(s) 223, 377
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 4 cut(s) 275, 435, 593, 688
DpnI GATC 6 cut(s) 388, 609, 649, 696, 708, 736
DpnII GATC 6 cut(s) 386, 607, 647, 694, 706, 734
DraI TTTAAA 2 cut(s) 462, 742
DriI GACNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 638
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 638
EciI GGCGGA 1 cut(s) 532
Ecl136II GAGCTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 689
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 180, 599
Eco53kI GAGCTC 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 599
EcoRI GAATTC 1 cut(s) 675
EcoRII CCWGG 3 cut(s) 176, 194, 213
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 689
ErhI CCWWGG 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 2 cut(s) 226, 380
FaiI YATR 5 cut(s) 224, 378, 469, 559, 561
FatI CATG 2 cut(s) 222, 376
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 111, 304, 587
FokI GGATG 2 cut(s) 52, 65
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 3 cut(s) 111, 304, 587
FspBI CTAG 1 cut(s) 772
GluI GCNGC 3 cut(s) 111, 304, 587
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 3 cut(s) 362, 374, 623
HapII CCGG 4 cut(s) 171, 228, 235, 620
HgaI GACGC 4 cut(s) 176, 190, 243, 326
Hin1I GRCGYC 2 cut(s) 168, 254
Hin1II CATG 2 cut(s) 226, 380
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 4 cut(s) 147, 207, 343, 381
HpaI GTTAAC 1 cut(s) 510
HpaII CCGG 4 cut(s) 171, 228, 235, 620
HphI GGTGA 2 cut(s) 28, 304
Hpy166II GTNNAC 3 cut(s) 13, 510, 631
Hpy188I TCNGA 9 cut(s) 118, 206, 247, 386, 391, 531, 607, 652, 711
Hpy188III TCNNGA 5 cut(s) 82, 157, 283, 496, 690
Hpy8I GTNNAC 3 cut(s) 13, 510, 631
Hpy99I CGWCG 4 cut(s) 122, 170, 263, 341
HpyAV CCTTC 5 cut(s) 280, 307, 563, 612, 659
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 1 cut(s) 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 132, 260, 452
HpyF3I CTNAG 4 cut(s) 275, 435, 593, 688
HpySE526I ACGT 1 cut(s) 395
Hsp92I GRCGYC 2 cut(s) 168, 254
Hsp92II CATG 2 cut(s) 226, 380
KpnI GGTACC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 607
KspAI GTTAAC 1 cut(s) 510
Kzo9I GATC 6 cut(s) 386, 607, 647, 694, 706, 734
LmnI GCTCC 2 cut(s) 519, 684
Lsp1109I GCAGC 1 cut(s) 573
LweI GCATC 2 cut(s) 14, 75
MabI ACCWGGT 1 cut(s) 176
MaeI CTAG 1 cut(s) 772
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 2 cut(s) 292, 566
MalI GATC 6 cut(s) 388, 609, 649, 696, 708, 736
MboI GATC 6 cut(s) 386, 607, 647, 694, 706, 734
MboII GAAGA 1 cut(s) 655
MfeI CAATTG 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 689
MluCI AATT 4 cut(s) 48, 355, 574, 675
MluI ACGCGT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 3 cut(s) 141, 207, 270
MseI TTAA 3 cut(s) 461, 509, 741
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 171, 228, 235, 620
MspR9I CCNGG 3 cut(s) 178, 196, 215
MssI GTTTAAAC 1 cut(s) 742
MunI CAATTG 1 cut(s) 574
MvaI CCWGG 3 cut(s) 178, 196, 215
MvnI CGCG 4 cut(s) 263, 284, 320, 545
MwoI GCNNNNNNNGC 4 cut(s) 53, 132, 260, 452
NcoI CCATGG 1 cut(s) 376
NdeII GATC 6 cut(s) 386, 607, 647, 694, 706, 734
NlaIII CATG 2 cut(s) 226, 380
NlaIV GGNNCC 3 cut(s) 175, 239, 441
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 292
NruI TCGCGA 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 451
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 336
PfeI GAWTC 3 cut(s) 147, 207, 381
PfoI TCCNGGA 1 cut(s) 213
PinAI ACCGGT 1 cut(s) 234
PkrI GCNGC 3 cut(s) 112, 305, 588
Ple19I CGATCG 1 cut(s) 737
PleI GAGTC 1 cut(s) 337
PmeI GTTTAAAC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 599
Psp124BI GAGCTC 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 176, 194, 213
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 3 cut(s) 176, 194, 213
PspN4I GGNNCC 3 cut(s) 175, 239, 441
PspPI GGNCC 3 cut(s) 180, 373, 599
PspPPI RGGWCCY 1 cut(s) 599
PvuI CGATCG 1 cut(s) 737
PvuII CAGCTG 1 cut(s) 141
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 1 cut(s) 689
SaqAI TTAA 3 cut(s) 461, 509, 741
SatI GCNGC 3 cut(s) 111, 304, 587
Sau3AI GATC 6 cut(s) 386, 607, 647, 694, 706, 734
Sau96I GGNCC 3 cut(s) 180, 373, 599
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 3 cut(s) 178, 196, 215
SduI GDGCHC 1 cut(s) 689
SexAI ACCWGGT 1 cut(s) 176
SfaNI GCATC 2 cut(s) 14, 75
SinI GGWCC 2 cut(s) 180, 599
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 48, 355, 574, 675
SsiI CCGC 8 cut(s) 19, 54, 103, 111, 263, 303, 517, 543
SspMI CTAG 1 cut(s) 772
SstI GAGCTC 1 cut(s) 689
StyD4I CCNGG 3 cut(s) 176, 194, 213
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 398
TaqI TCGA 5 cut(s) 156, 330, 336, 414, 673
TasI AATT 4 cut(s) 48, 355, 574, 675
TauI GCSGC 2 cut(s) 113, 306
TfiI GAWTC 3 cut(s) 147, 207, 381
Tru1I TTAA 3 cut(s) 461, 509, 741
Tru9I TTAA 3 cut(s) 461, 509, 741
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 586
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 417, 678
TspGWI ACGGA 3 cut(s) 64, 180, 247
VpaK11BI GGWCC 2 cut(s) 180, 599
XapI RAATTY 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.